Wall clock time and date at job start Mon Mar 30 2020 00:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42907 * 109.46570 * 2 1 4 4 C 1.35902 * 116.99720 * 180.02562 * 3 2 1 5 5 C 1.38839 * 119.99904 * 0.02562 * 4 3 2 6 6 C 1.38193 * 120.18812 * 179.97438 * 5 4 3 7 7 C 1.38074 * 120.18110 * 359.78029 * 6 5 4 8 8 C 1.39333 * 119.98771 * 0.47734 * 7 6 5 9 9 C 1.48415 * 120.09339 * 179.78785 * 8 7 6 10 10 C 1.39706 * 120.41282 * 179.74468 * 9 8 7 11 11 N 1.31912 * 121.15471 * 179.97438 * 10 9 8 12 12 C 1.31521 * 122.11607 * 0.02562 * 11 10 9 13 13 C 1.40769 * 120.67083 * 359.72468 * 12 11 10 14 14 C 1.41434 * 120.60774 * 180.31148 * 13 12 11 15 15 H 1.07999 * 120.00438 * 23.70385 * 14 13 12 16 16 C 1.39936 * 119.99700 * 203.70864 * 14 13 12 17 17 N 1.30832 * 119.99995 * 17.56426 * 16 14 13 18 18 Si 1.86804 * 119.99900 * 197.55780 * 16 14 13 19 19 H 1.48498 * 109.46915 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.46886 * 120.00147 * 18 16 14 21 21 H 1.48501 * 109.47028 * 240.00377 * 18 16 14 22 22 C 1.39134 * 120.40902 * 359.71523 * 9 8 7 23 23 C 1.38500 * 119.99716 * 180.02562 * 4 3 2 24 24 H 1.08995 * 109.47285 * 60.00082 * 1 2 3 25 25 H 1.09007 * 109.46726 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47217 * 299.99434 * 1 2 3 27 27 H 1.08997 * 109.47217 * 240.00566 * 2 1 3 28 28 H 1.08995 * 109.47285 * 119.99918 * 2 1 3 29 29 H 1.07999 * 119.90150 * 359.97438 * 5 4 3 30 30 H 1.08006 * 119.91005 * 180.02562 * 6 5 4 31 31 H 1.07999 * 120.00731 * 180.23563 * 7 6 5 32 32 H 1.07999 * 119.42143 * 359.97165 * 10 9 8 33 33 H 1.08010 * 119.66307 * 180.02562 * 12 11 10 34 34 H 0.97003 * 119.99715 * 179.97438 * 17 16 14 35 35 H 1.08001 * 120.95603 * 0.02626 * 22 9 8 36 36 H 1.08001 * 120.08928 * 359.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3536 1.5255 -0.0005 5 6 4.1993 0.4245 -0.0016 6 6 5.5699 0.6011 -0.0027 7 6 6.1059 1.8736 -0.0073 8 6 5.2640 2.9838 -0.0008 9 6 5.8376 4.3527 -0.0010 10 6 4.9997 5.4705 0.0001 11 7 5.4936 6.6937 0.0004 12 6 6.7884 6.9249 -0.0007 13 6 7.7081 5.8592 0.0034 14 6 9.1001 6.1093 0.0088 15 1 9.4787 7.0479 0.3858 16 6 9.9869 5.1407 -0.4746 17 7 9.5459 4.1708 -1.2338 18 14 11.8003 5.2326 -0.0358 19 1 12.0411 6.4161 0.8282 20 1 12.1969 3.9997 0.6908 21 1 12.6046 5.3555 -1.2781 22 6 7.2164 4.5385 -0.0017 23 6 3.8828 2.8054 0.0000 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.7849 -0.5728 -0.0016 30 1 6.2237 -0.2586 -0.0039 31 1 7.1774 2.0083 -0.0120 32 1 3.9287 5.3309 0.0006 33 1 7.1496 7.9428 0.0000 34 1 10.1607 3.4996 -1.5692 35 1 7.8907 3.6948 -0.0025 36 1 3.2262 3.6629 0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241117329.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:46 Heat of formation + Delta-G solvation = 0.179054 kcal Electronic energy + Delta-G solvation = -19165.002489 eV Core-core repulsion = 16192.470920 eV Total energy + Delta-G solvation = -2972.531569 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.90422 -38.50346 -36.99434 -34.15126 -32.25352 -31.95350 -30.49688 -29.37897 -28.13558 -25.69473 -24.05214 -22.70111 -22.22697 -20.96410 -20.11926 -17.96406 -17.01293 -16.22549 -16.06265 -15.66320 -15.32875 -14.87571 -14.54875 -13.91961 -13.35828 -13.20122 -13.17502 -12.92039 -12.63032 -12.54659 -11.96871 -11.83576 -11.73069 -11.55439 -11.36130 -11.23193 -10.80062 -10.72349 -10.64593 -10.46229 -9.90934 -9.44292 -9.20113 -8.17168 -8.00944 -7.87490 -7.27255 -6.90154 -4.55143 1.39632 1.84052 2.64854 2.96039 2.99809 3.04752 3.13968 3.30451 3.80971 4.22713 4.59657 4.81071 4.85582 5.07855 5.15764 5.20301 5.38194 5.52011 5.61704 5.64654 5.74770 5.77400 5.89156 5.95440 6.05764 6.28192 6.48077 6.61735 6.66214 6.74497 6.84475 6.98363 7.05396 7.14378 7.26099 7.62593 7.68707 7.78651 7.86624 8.34935 8.60567 8.63636 9.56409 9.99519 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.027892 B = 0.004397 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.644485 B = 6366.612978 C = 7281.625188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.319 6.319 4 C 0.124 3.876 5 C -0.226 4.226 6 C -0.082 4.082 7 C -0.148 4.148 8 C 0.030 3.970 9 C -0.097 4.097 10 C -0.020 4.020 11 N -0.470 5.470 12 C -0.015 4.015 13 C 0.059 3.941 14 C -0.449 4.449 15 H 0.085 0.915 16 C 0.074 3.926 17 N -0.790 5.790 18 Si 0.912 3.088 19 H -0.258 1.258 20 H -0.271 1.271 21 H -0.273 1.273 22 C -0.112 4.112 23 C -0.152 4.152 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.131 0.869 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.284 0.716 35 H 0.135 0.865 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.531 -10.369 1.655 12.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.234 6.234 4 C 0.080 3.920 5 C -0.245 4.245 6 C -0.100 4.100 7 C -0.166 4.166 8 C 0.029 3.971 9 C -0.099 4.099 10 C -0.178 4.178 11 N -0.177 5.177 12 C -0.176 4.176 13 C 0.055 3.945 14 C -0.478 4.478 15 H 0.103 0.897 16 C -0.144 4.144 17 N -0.414 5.414 18 Si 0.736 3.264 19 H -0.182 1.182 20 H -0.196 1.196 21 H -0.198 1.198 22 C -0.137 4.137 23 C -0.171 4.171 24 H 0.084 0.916 25 H 0.093 0.907 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.137 0.863 30 H 0.138 0.862 31 H 0.148 0.852 32 H 0.141 0.859 33 H 0.145 0.855 34 H 0.095 0.905 35 H 0.152 0.848 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.184 -9.729 1.511 12.803 hybrid contribution 1.560 -1.116 0.017 1.918 sum -6.624 -10.844 1.528 12.799 Atomic orbital electron populations 1.21769 0.93078 1.02518 1.03501 1.22696 0.95542 0.82586 1.01154 1.86052 1.19532 1.28625 1.89143 1.18811 0.81735 0.94055 0.97402 1.21079 0.94443 0.97338 1.11602 1.20795 0.94042 0.97065 0.98105 1.21304 1.00620 0.91533 1.03161 1.18746 0.91409 0.93187 0.93711 1.19420 0.94815 0.91242 1.04469 1.21831 0.97770 0.87396 1.10806 1.66961 1.16383 1.23901 1.10468 1.22578 0.87972 0.98057 1.08982 1.18483 0.94433 0.91745 0.89820 1.19592 0.90452 1.02156 1.35630 0.89712 1.25980 1.01993 0.94126 0.92346 1.69797 1.37981 1.11298 1.22350 0.86192 0.81177 0.79658 0.79395 1.18193 1.19554 1.19827 1.21868 0.92234 0.98217 1.01422 1.20469 0.94715 0.94609 1.07272 0.91566 0.90664 0.91573 0.92303 0.92318 0.86291 0.86239 0.85164 0.85890 0.85497 0.90539 0.84791 0.85084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.28 37.16 0.38 -0.87 16 2 C 0.06 0.59 5.46 37.16 0.20 0.79 16 3 O -0.32 -4.77 10.13 -19.43 -0.20 -4.97 16 4 C 0.12 2.06 6.68 -39.26 -0.26 1.80 16 5 C -0.23 -3.38 9.03 -39.38 -0.36 -3.74 16 6 C -0.08 -1.29 10.03 -39.66 -0.40 -1.69 16 7 C -0.15 -2.78 9.43 -39.23 -0.37 -3.15 16 8 C 0.03 0.62 5.87 -104.92 -0.62 0.01 16 9 C -0.10 -2.28 5.88 -104.82 -0.62 -2.90 16 10 C -0.02 -0.47 10.60 -16.97 -0.18 -0.65 16 11 N -0.47 -11.74 10.32 -12.28 -0.13 -11.87 16 12 C -0.02 -0.38 10.96 -16.73 -0.18 -0.56 16 13 C 0.06 1.55 5.59 -106.71 -0.60 0.95 16 14 C -0.45 -11.32 9.08 -37.73 -0.34 -11.66 16 15 H 0.08 2.04 7.90 -52.49 -0.41 1.62 16 16 C 0.07 1.76 5.18 -17.34 -0.09 1.67 16 17 N -0.79 -19.24 10.92 55.55 0.61 -18.64 16 18 Si 0.91 17.68 29.59 -169.99 -5.03 12.65 16 19 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 20 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 21 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 22 C -0.11 -2.82 8.17 -38.23 -0.31 -3.13 16 23 C -0.15 -2.83 9.37 -39.10 -0.37 -3.20 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.57 7.66 -51.93 -0.40 0.18 16 28 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 29 H 0.12 1.42 6.28 -52.49 -0.33 1.09 16 30 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 31 H 0.13 2.52 6.26 -52.49 -0.33 2.19 16 32 H 0.12 2.59 6.20 -52.49 -0.33 2.26 16 33 H 0.13 2.93 8.06 -52.48 -0.42 2.51 16 34 H 0.28 6.24 8.30 -40.82 -0.34 5.90 16 35 H 0.13 3.36 4.43 -52.49 -0.23 3.12 16 36 H 0.13 2.35 6.22 -52.49 -0.33 2.03 16 LS Contribution 305.36 15.07 4.60 4.60 Total: -1.00 -27.97 305.36 -8.25 -36.22 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -4.00 Total: 8.31 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: -4.11 Total: -26.32 kcal Atomic # 7 Polarization: -30.98 SS G_CDS: 0.48 Total: -30.50 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -0.20 Total: -4.97 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.03 Total: 12.65 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.97 -8.25 -36.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241117329.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.402 kcal (2) G-P(sol) polarization free energy of solvation -27.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds