Wall clock time and date at job start Mon Mar 30 2020 00:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42907 * 109.46570 * 2 1 4 4 C 1.35902 * 116.99720 * 180.02562 * 3 2 1 5 5 C 1.38839 * 119.99904 * 0.02562 * 4 3 2 6 6 C 1.38193 * 120.18812 * 179.97438 * 5 4 3 7 7 C 1.38074 * 120.18110 * 359.78029 * 6 5 4 8 8 C 1.39333 * 119.98771 * 0.47734 * 7 6 5 9 9 C 1.48415 * 120.09339 * 179.78785 * 8 7 6 10 10 C 1.39706 * 120.41282 * 179.74468 * 9 8 7 11 11 N 1.31912 * 121.15471 * 179.97438 * 10 9 8 12 12 C 1.31521 * 122.11607 * 0.02562 * 11 10 9 13 13 C 1.40769 * 120.67083 * 359.72468 * 12 11 10 14 14 C 1.41434 * 120.60774 * 180.31148 * 13 12 11 15 15 H 1.07999 * 120.00438 * 23.70385 * 14 13 12 16 16 C 1.39936 * 119.99700 * 203.70864 * 14 13 12 17 17 N 1.30832 * 119.99995 * 17.56426 * 16 14 13 18 18 Si 1.86804 * 119.99900 * 197.55780 * 16 14 13 19 19 H 1.48498 * 109.46915 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.46886 * 120.00147 * 18 16 14 21 21 H 1.48501 * 109.47028 * 240.00377 * 18 16 14 22 22 C 1.39134 * 120.40902 * 359.71523 * 9 8 7 23 23 C 1.38500 * 119.99716 * 180.02562 * 4 3 2 24 24 H 1.08995 * 109.47285 * 60.00082 * 1 2 3 25 25 H 1.09007 * 109.46726 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47217 * 299.99434 * 1 2 3 27 27 H 1.08997 * 109.47217 * 240.00566 * 2 1 3 28 28 H 1.08995 * 109.47285 * 119.99918 * 2 1 3 29 29 H 1.07999 * 119.90150 * 359.97438 * 5 4 3 30 30 H 1.08006 * 119.91005 * 180.02562 * 6 5 4 31 31 H 1.07999 * 120.00731 * 180.23563 * 7 6 5 32 32 H 1.07999 * 119.42143 * 359.97165 * 10 9 8 33 33 H 1.08010 * 119.66307 * 180.02562 * 12 11 10 34 34 H 0.97003 * 119.99715 * 179.97438 * 17 16 14 35 35 H 1.08001 * 120.95603 * 0.02626 * 22 9 8 36 36 H 1.08001 * 120.08928 * 359.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3536 1.5255 -0.0005 5 6 4.1993 0.4245 -0.0016 6 6 5.5699 0.6011 -0.0027 7 6 6.1059 1.8736 -0.0073 8 6 5.2640 2.9838 -0.0008 9 6 5.8376 4.3527 -0.0010 10 6 4.9997 5.4705 0.0001 11 7 5.4936 6.6937 0.0004 12 6 6.7884 6.9249 -0.0007 13 6 7.7081 5.8592 0.0034 14 6 9.1001 6.1093 0.0088 15 1 9.4787 7.0479 0.3858 16 6 9.9869 5.1407 -0.4746 17 7 9.5459 4.1708 -1.2338 18 14 11.8003 5.2326 -0.0358 19 1 12.0411 6.4161 0.8282 20 1 12.1969 3.9997 0.6908 21 1 12.6046 5.3555 -1.2781 22 6 7.2164 4.5385 -0.0017 23 6 3.8828 2.8054 0.0000 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.7849 -0.5728 -0.0016 30 1 6.2237 -0.2586 -0.0039 31 1 7.1774 2.0083 -0.0120 32 1 3.9287 5.3309 0.0006 33 1 7.1496 7.9428 0.0000 34 1 10.1607 3.4996 -1.5692 35 1 7.8907 3.6948 -0.0025 36 1 3.2262 3.6629 0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241117329.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:46 Heat of formation + Delta-G solvation = -14.181536 kcal Electronic energy + Delta-G solvation = -19165.625211 eV Core-core repulsion = 16192.470920 eV Total energy + Delta-G solvation = -2973.154291 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.20136 -40.18858 -38.34873 -36.00234 -33.78768 -32.91972 -32.32037 -30.69453 -29.66771 -27.56123 -25.21744 -24.29727 -23.56295 -22.58232 -21.56509 -19.47578 -18.62749 -17.80879 -17.24587 -16.99968 -16.81938 -16.46047 -16.12223 -15.48408 -14.63762 -14.58766 -14.50485 -14.33116 -14.12590 -13.69270 -13.41094 -13.31807 -13.15929 -12.95205 -12.83701 -12.69936 -12.35235 -12.14569 -11.77625 -11.66884 -11.66195 -11.22294 -10.75002 -10.06961 -9.82088 -9.32042 -8.91064 -8.69306 -6.47865 -0.12914 0.49640 0.89420 1.22032 1.40036 1.51213 1.55844 2.18280 2.25787 2.62795 2.94075 3.70998 3.79263 3.85888 4.02225 4.09818 4.20163 4.23173 4.36327 4.41658 4.43035 4.53739 4.60043 4.79070 4.86518 4.94946 4.97233 5.10775 5.18178 5.21535 5.24064 5.34891 5.46089 5.55766 5.79963 5.85028 5.89197 6.02205 6.45208 6.50516 6.71895 6.73762 7.64193 8.22022 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.027892 B = 0.004397 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.644485 B = 6366.612978 C = 7281.625188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.042 3.958 3 O -0.333 6.333 4 C 0.126 3.874 5 C -0.209 4.209 6 C -0.073 4.073 7 C -0.163 4.163 8 C -0.001 4.001 9 C -0.092 4.092 10 C -0.036 4.036 11 N -0.480 5.480 12 C -0.040 4.040 13 C 0.037 3.963 14 C -0.477 4.477 15 H 0.088 0.912 16 C 0.037 3.963 17 N -0.814 5.814 18 Si 0.988 3.012 19 H -0.257 1.257 20 H -0.262 1.262 21 H -0.265 1.265 22 C -0.136 4.136 23 C -0.164 4.164 24 H 0.060 0.940 25 H 0.103 0.897 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.159 0.841 30 H 0.155 0.845 31 H 0.115 0.885 32 H 0.145 0.855 33 H 0.137 0.863 34 H 0.294 0.706 35 H 0.130 0.870 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.752 -13.164 1.797 15.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.032 4.032 3 O -0.248 6.248 4 C 0.081 3.919 5 C -0.227 4.227 6 C -0.091 4.091 7 C -0.182 4.182 8 C -0.002 4.002 9 C -0.095 4.095 10 C -0.194 4.194 11 N -0.187 5.187 12 C -0.200 4.200 13 C 0.032 3.968 14 C -0.506 4.506 15 H 0.106 0.894 16 C -0.180 4.180 17 N -0.439 5.439 18 Si 0.808 3.192 19 H -0.180 1.180 20 H -0.186 1.186 21 H -0.190 1.190 22 C -0.162 4.162 23 C -0.182 4.182 24 H 0.079 0.921 25 H 0.122 0.878 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.177 0.823 30 H 0.173 0.827 31 H 0.133 0.867 32 H 0.162 0.838 33 H 0.155 0.845 34 H 0.105 0.895 35 H 0.147 0.853 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.437 -12.525 1.649 15.191 hybrid contribution 1.456 -0.418 -0.057 1.516 sum -6.981 -12.943 1.592 14.792 Atomic orbital electron populations 1.21813 0.91472 1.04245 1.03066 1.23120 0.96920 0.80658 1.02500 1.86059 1.18373 1.31651 1.88726 1.18847 0.82956 0.93648 0.96479 1.21506 0.93819 0.98654 1.08724 1.21143 0.95051 0.96645 0.96280 1.21313 0.99825 0.92682 1.04335 1.18664 0.92562 0.92072 0.96874 1.19713 0.94302 0.93136 1.02302 1.22228 0.98919 0.87216 1.10995 1.66954 1.16351 1.24725 1.10650 1.22762 0.88209 0.98547 1.10501 1.18824 0.95301 0.92412 0.90232 1.19875 0.90756 1.03225 1.36779 0.89434 1.26855 1.06453 0.93205 0.91494 1.69837 1.39978 1.11734 1.22368 0.85059 0.75041 0.79832 0.79252 1.17992 1.18628 1.18969 1.21905 0.93106 0.97845 1.03314 1.20463 0.93911 0.95952 1.07900 0.92073 0.87818 0.91998 0.90912 0.90802 0.82312 0.82742 0.86672 0.83807 0.84511 0.89517 0.85276 0.85440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 10.28 71.98 0.74 -1.26 16 2 C 0.04 0.74 5.46 71.98 0.39 1.14 16 3 O -0.33 -9.19 10.13 -92.45 -0.94 -10.13 16 4 C 0.13 3.92 6.68 22.48 0.15 4.07 16 5 C -0.21 -5.49 9.03 22.40 0.20 -5.29 16 6 C -0.07 -2.11 10.03 22.22 0.22 -1.89 16 7 C -0.16 -6.12 9.43 22.49 0.21 -5.91 16 8 C 0.00 -0.03 5.87 -20.05 -0.12 -0.15 16 9 C -0.09 -4.51 5.88 -20.00 -0.12 -4.63 16 10 C -0.04 -1.74 10.60 85.04 0.90 -0.84 16 11 N -0.48 -24.86 10.32 -192.77 -1.99 -26.85 16 12 C -0.04 -2.10 10.96 85.36 0.94 -1.16 16 13 C 0.04 1.99 5.59 -21.22 -0.12 1.87 16 14 C -0.48 -24.87 9.08 23.47 0.21 -24.65 16 15 H 0.09 4.34 7.90 -2.91 -0.02 4.32 16 16 C 0.04 1.75 5.18 85.25 0.44 2.20 16 17 N -0.81 -40.36 10.92 21.82 0.24 -40.13 16 18 Si 0.99 36.05 29.59 68.60 2.03 38.08 16 19 H -0.26 -9.20 7.11 99.48 0.71 -8.50 16 20 H -0.26 -9.13 7.11 99.48 0.71 -8.43 16 21 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 22 C -0.14 -7.18 8.17 23.14 0.19 -6.99 16 23 C -0.16 -6.07 9.37 22.58 0.21 -5.86 16 24 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 26 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.07 1.10 7.66 -2.39 -0.02 1.08 16 28 H 0.07 1.10 7.66 -2.39 -0.02 1.08 16 29 H 0.16 2.91 6.28 -2.91 -0.02 2.89 16 30 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 31 H 0.12 4.59 6.26 -2.91 -0.02 4.58 16 32 H 0.14 6.22 6.20 -2.91 -0.02 6.21 16 33 H 0.14 6.65 8.06 -2.91 -0.02 6.63 16 34 H 0.29 12.97 8.30 -92.71 -0.77 12.20 16 35 H 0.13 6.80 4.43 -2.91 -0.01 6.79 16 36 H 0.13 4.66 6.22 -2.91 -0.02 4.64 16 Total: -1.00 -62.54 305.36 4.90 -57.64 By element: Atomic # 1 Polarization: 29.63 SS G_CDS: 1.10 Total: 30.74 kcal Atomic # 6 Polarization: -53.81 SS G_CDS: 4.46 Total: -49.35 kcal Atomic # 7 Polarization: -65.23 SS G_CDS: -1.75 Total: -66.98 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: -0.94 Total: -10.13 kcal Atomic # 14 Polarization: 36.05 SS G_CDS: 2.03 Total: 38.08 kcal Total: -62.54 4.90 -57.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241117329.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.456 kcal (2) G-P(sol) polarization free energy of solvation -62.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds