Wall clock time and date at job start Mon Mar 30 2020 00:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35684 * 117.00372 * 2 1 4 4 C 1.37910 * 120.18732 * 0.25895 * 3 2 1 5 5 C 1.39707 * 119.92756 * 180.23143 * 4 3 2 6 6 C 1.47892 * 119.84344 * 179.78220 * 5 4 3 7 7 C 1.39712 * 120.06428 * 179.72372 * 6 5 4 8 8 C 1.37710 * 119.93338 * 180.02562 * 7 6 5 9 9 C 1.39164 * 120.06526 * 359.97438 * 8 7 6 10 10 N 1.39355 * 119.93280 * 179.97438 * 9 8 7 11 11 C 1.39152 * 120.13247 * 0.27791 * 9 8 7 12 12 C 1.37720 * 120.06772 * 359.44672 * 11 9 8 13 13 C 1.40142 * 120.31058 * 359.50822 * 5 4 3 14 14 C 1.36078 * 120.38285 * 0.25695 * 13 5 4 15 15 C 1.40925 * 120.06439 * 359.97438 * 14 13 5 16 16 C 1.40815 * 120.15218 * 180.02562 * 15 14 13 17 17 H 1.08006 * 119.99626 * 204.95157 * 16 15 14 18 18 C 1.39943 * 120.00192 * 24.95200 * 16 15 14 19 19 N 1.30864 * 119.99890 * 17.85035 * 18 16 15 20 20 Si 1.86809 * 120.00008 * 197.84793 * 18 16 15 21 21 H 1.48491 * 109.46868 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46669 * 120.00170 * 20 18 16 23 23 H 1.48500 * 109.46910 * 240.00121 * 20 18 16 24 24 H 1.08997 * 109.47184 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46858 * 300.00145 * 1 2 3 26 26 H 1.08996 * 109.47031 * 60.00059 * 1 2 3 27 27 H 1.08000 * 120.03621 * 359.97438 * 4 3 2 28 28 H 1.07996 * 120.03451 * 0.02562 * 7 6 5 29 29 H 1.08000 * 119.96701 * 179.97438 * 8 7 6 30 30 H 0.96997 * 120.00159 * 359.97438 * 10 9 8 31 31 H 0.97002 * 119.99950 * 179.73174 * 10 9 8 32 32 H 1.08000 * 119.97073 * 179.70714 * 11 9 8 33 33 H 1.07992 * 120.03625 * 180.29934 * 12 11 9 34 34 H 1.08002 * 119.80867 * 180.27762 * 13 5 4 35 35 H 1.08002 * 119.96745 * 180.02562 * 14 13 5 36 36 H 0.97008 * 120.00126 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2089 0.0000 4 6 1.2979 2.3680 0.0054 5 6 1.9378 3.6099 0.0005 6 6 1.1346 4.8517 0.0014 7 6 1.7698 6.0961 0.0023 8 6 1.0193 7.2507 0.0037 9 6 -0.3705 7.1788 0.0036 10 7 -1.1273 8.3490 0.0056 11 6 -1.0060 5.9409 0.0080 12 6 -0.2608 4.7828 0.0009 13 6 3.3372 3.6844 0.0005 14 6 4.0869 2.5488 0.0000 15 6 3.4580 1.2876 0.0000 16 6 4.2320 0.1113 0.0001 17 1 3.8203 -0.8060 -0.3945 18 6 5.5346 0.1307 0.5113 19 7 5.9162 1.1085 1.2928 20 14 6.7285 -1.2392 0.0782 21 1 6.0569 -2.2170 -0.8151 22 1 7.9095 -0.6655 -0.6156 23 1 7.1683 -1.9237 1.3205 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.2191 2.3158 0.0092 28 1 2.8483 6.1525 0.0019 29 1 1.5097 8.2129 0.0048 30 1 -0.6853 9.2124 0.0073 31 1 -2.0960 8.3001 0.0016 32 1 -2.0847 5.8882 0.0127 33 1 -0.7545 3.8223 -0.0006 34 1 3.8235 4.6488 0.0012 35 1 5.1650 2.6140 0.0004 36 1 6.8190 1.1218 1.6476 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241542722.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:06 Heat of formation + Delta-G solvation = 2.427237 kcal Electronic energy + Delta-G solvation = -19347.732622 eV Core-core repulsion = 16375.298542 eV Total energy + Delta-G solvation = -2972.434080 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.14534 -38.33235 -36.16902 -34.55773 -33.26416 -30.63448 -30.34910 -28.74012 -27.69730 -26.52459 -24.58714 -22.53899 -21.90868 -20.24989 -19.95017 -17.62864 -16.85770 -16.53852 -16.36548 -15.31534 -14.89692 -14.62177 -14.28962 -14.25263 -13.49934 -13.19656 -13.09029 -12.89037 -12.64907 -12.26289 -11.97424 -11.63134 -11.27351 -11.22930 -11.04011 -10.79766 -10.59880 -10.44404 -10.40695 -9.68815 -9.60632 -9.51080 -9.18311 -8.49513 -7.79850 -7.13692 -6.85031 -6.56778 -4.21125 1.77506 1.92222 2.84303 3.05532 3.07433 3.13666 3.24249 3.91332 4.10323 4.33760 4.52372 4.77493 5.29417 5.36790 5.62665 5.71151 5.79287 5.85470 5.88696 5.95109 6.01156 6.16309 6.25476 6.39495 6.59805 6.65331 6.78927 6.95449 7.03102 7.14231 7.31619 7.35389 7.38602 7.70722 7.75447 7.87909 7.93938 8.10140 8.17369 8.40530 8.64977 8.78009 9.05410 10.11103 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.027626 B = 0.004648 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.309331 B = 6022.775073 C = 6953.058592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.313 6.313 3 C 0.007 3.993 4 C -0.156 4.156 5 C -0.160 4.160 6 C -0.035 4.035 7 C -0.092 4.092 8 C -0.187 4.187 9 C 0.176 3.824 10 N -0.887 5.887 11 C -0.188 4.188 12 C -0.095 4.095 13 C -0.101 4.101 14 C -0.154 4.154 15 C 0.105 3.895 16 C -0.433 4.433 17 H 0.085 0.915 18 C 0.071 3.929 19 N -0.785 5.785 20 Si 0.911 3.089 21 H -0.259 1.259 22 H -0.271 1.271 23 H -0.274 1.274 24 H 0.081 0.919 25 H 0.040 0.960 26 H 0.039 0.961 27 H 0.100 0.900 28 H 0.121 0.879 29 H 0.111 0.889 30 H 0.392 0.608 31 H 0.391 0.609 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.093 0.907 35 H 0.124 0.876 36 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.996 7.121 -1.713 10.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.228 6.228 3 C -0.037 4.037 4 C -0.175 4.175 5 C -0.161 4.161 6 C -0.036 4.036 7 C -0.111 4.111 8 C -0.210 4.210 9 C 0.074 3.926 10 N -0.427 5.427 11 C -0.211 4.211 12 C -0.114 4.114 13 C -0.119 4.119 14 C -0.173 4.173 15 C 0.102 3.898 16 C -0.461 4.461 17 H 0.104 0.896 18 C -0.147 4.147 19 N -0.410 5.410 20 Si 0.735 3.265 21 H -0.182 1.182 22 H -0.196 1.196 23 H -0.199 1.199 24 H 0.100 0.900 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.118 0.882 28 H 0.139 0.861 29 H 0.129 0.871 30 H 0.219 0.781 31 H 0.219 0.781 32 H 0.128 0.872 33 H 0.133 0.867 34 H 0.111 0.889 35 H 0.142 0.858 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.656 6.939 -1.560 10.450 hybrid contribution 0.035 0.000 -0.014 0.037 sum -7.622 6.940 -1.574 10.427 Atomic orbital electron populations 1.22729 0.81794 1.01721 0.99925 1.85964 1.18174 1.28197 1.90448 1.19051 0.92287 0.82635 1.09722 1.20659 0.97295 0.92057 1.07528 1.17796 0.92307 0.90124 1.15882 1.18777 0.92303 0.92792 0.99765 1.20991 0.99474 0.91267 0.99335 1.20411 0.91654 0.98311 1.10583 1.17687 0.90869 0.86613 0.97398 1.42244 1.08026 1.05359 1.87120 1.20379 0.98665 0.91231 1.10781 1.20923 0.93415 0.97127 0.99920 1.20460 0.92527 0.97278 1.01658 1.20749 0.99636 0.90545 1.06382 1.17137 0.87405 0.94091 0.91215 1.19546 0.96533 0.96889 1.33137 0.89646 1.25982 0.98954 0.97028 0.92740 1.69856 1.19247 1.30481 1.21399 0.86210 0.79826 0.81099 0.79377 1.18216 1.19634 1.19923 0.90046 0.94167 0.94236 0.88224 0.86148 0.87125 0.78110 0.78145 0.87230 0.86659 0.88878 0.85798 0.90711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 9.81 101.05 0.99 1.59 16 2 O -0.31 -7.28 9.77 -18.76 -0.18 -7.47 16 3 C 0.01 0.18 6.71 -38.45 -0.26 -0.08 16 4 C -0.16 -3.56 8.40 -39.15 -0.33 -3.89 16 5 C -0.16 -3.61 5.89 -104.68 -0.62 -4.23 16 6 C -0.03 -0.68 5.88 -104.84 -0.62 -1.30 16 7 C -0.09 -1.64 9.42 -39.22 -0.37 -2.01 16 8 C -0.19 -2.89 9.87 -39.43 -0.39 -3.28 16 9 C 0.18 2.56 6.76 -83.76 -0.57 2.00 16 10 N -0.89 -9.30 9.07 32.44 0.29 -9.01 16 11 C -0.19 -2.88 9.87 -39.43 -0.39 -3.27 16 12 C -0.10 -1.68 9.41 -39.22 -0.37 -2.05 16 13 C -0.10 -2.36 9.34 -39.64 -0.37 -2.73 16 14 C -0.15 -3.94 8.61 -39.34 -0.34 -4.28 16 15 C 0.10 2.80 5.58 -106.66 -0.60 2.21 16 16 C -0.43 -11.54 8.69 -37.97 -0.33 -11.87 16 17 H 0.09 2.27 7.64 -52.48 -0.40 1.86 16 18 C 0.07 1.77 5.13 -17.33 -0.09 1.68 16 19 N -0.79 -19.92 10.97 55.55 0.61 -19.31 16 20 Si 0.91 18.51 29.60 -169.99 -5.03 13.48 16 21 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 22 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 23 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 24 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.04 0.65 7.65 -51.93 -0.40 0.26 16 26 H 0.04 0.63 7.67 -51.93 -0.40 0.23 16 27 H 0.10 2.00 4.40 -52.49 -0.23 1.77 16 28 H 0.12 2.06 6.16 -52.49 -0.32 1.73 16 29 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 30 H 0.39 3.35 8.83 -40.82 -0.36 2.99 16 31 H 0.39 3.33 8.84 -40.82 -0.36 2.97 16 32 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.12 1.93 6.17 -52.49 -0.32 1.60 16 34 H 0.09 1.95 6.16 -52.49 -0.32 1.63 16 35 H 0.12 3.23 6.17 -52.49 -0.32 2.91 16 36 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 LS Contribution 302.37 15.07 4.56 4.56 Total: -1.00 -29.15 302.37 -8.24 -37.38 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -3.85 Total: 11.89 kcal Atomic # 6 Polarization: -26.89 SS G_CDS: -4.64 Total: -31.52 kcal Atomic # 7 Polarization: -29.22 SS G_CDS: 0.90 Total: -28.31 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: -0.18 Total: -7.47 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.48 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.15 -8.24 -37.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241542722.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.810 kcal (2) G-P(sol) polarization free energy of solvation -29.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds