Wall clock time and date at job start Mon Mar 30 2020 00:54:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42902 * 1
3 3 C 1.35684 * 117.00372 * 2 1
4 4 C 1.37910 * 120.18732 * 0.25895 * 3 2 1
5 5 C 1.39707 * 119.92756 * 180.23143 * 4 3 2
6 6 C 1.47892 * 119.84344 * 179.78220 * 5 4 3
7 7 C 1.39712 * 120.06428 * 179.72372 * 6 5 4
8 8 C 1.37710 * 119.93338 * 180.02562 * 7 6 5
9 9 C 1.39164 * 120.06526 * 359.97438 * 8 7 6
10 10 N 1.39355 * 119.93280 * 179.97438 * 9 8 7
11 11 C 1.39152 * 120.13247 * 0.27791 * 9 8 7
12 12 C 1.37720 * 120.06772 * 359.44672 * 11 9 8
13 13 C 1.40142 * 120.31058 * 359.50822 * 5 4 3
14 14 C 1.36078 * 120.38285 * 0.25695 * 13 5 4
15 15 C 1.40925 * 120.06439 * 359.97438 * 14 13 5
16 16 C 1.40815 * 120.15218 * 180.02562 * 15 14 13
17 17 H 1.08006 * 119.99626 * 204.95157 * 16 15 14
18 18 C 1.39943 * 120.00192 * 24.95200 * 16 15 14
19 19 N 1.30864 * 119.99890 * 17.85035 * 18 16 15
20 20 Si 1.86809 * 120.00008 * 197.84793 * 18 16 15
21 21 H 1.48491 * 109.46868 * 0.02562 * 20 18 16
22 22 H 1.48500 * 109.46669 * 120.00170 * 20 18 16
23 23 H 1.48500 * 109.46910 * 240.00121 * 20 18 16
24 24 H 1.08997 * 109.47184 * 180.02562 * 1 2 3
25 25 H 1.09000 * 109.46858 * 300.00145 * 1 2 3
26 26 H 1.08996 * 109.47031 * 60.00059 * 1 2 3
27 27 H 1.08000 * 120.03621 * 359.97438 * 4 3 2
28 28 H 1.07996 * 120.03451 * 0.02562 * 7 6 5
29 29 H 1.08000 * 119.96701 * 179.97438 * 8 7 6
30 30 H 0.96997 * 120.00159 * 359.97438 * 10 9 8
31 31 H 0.97002 * 119.99950 * 179.73174 * 10 9 8
32 32 H 1.08000 * 119.97073 * 179.70714 * 11 9 8
33 33 H 1.07992 * 120.03625 * 180.29934 * 12 11 9
34 34 H 1.08002 * 119.80867 * 180.27762 * 13 5 4
35 35 H 1.08002 * 119.96745 * 180.02562 * 14 13 5
36 36 H 0.97008 * 120.00126 * 179.97438 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0451 1.2089 0.0000
4 6 1.2979 2.3680 0.0054
5 6 1.9378 3.6099 0.0005
6 6 1.1346 4.8517 0.0014
7 6 1.7698 6.0961 0.0023
8 6 1.0193 7.2507 0.0037
9 6 -0.3705 7.1788 0.0036
10 7 -1.1273 8.3490 0.0056
11 6 -1.0060 5.9409 0.0080
12 6 -0.2608 4.7828 0.0009
13 6 3.3372 3.6844 0.0005
14 6 4.0869 2.5488 0.0000
15 6 3.4580 1.2876 0.0000
16 6 4.2320 0.1113 0.0001
17 1 3.8203 -0.8060 -0.3945
18 6 5.5346 0.1307 0.5113
19 7 5.9162 1.1085 1.2928
20 14 6.7285 -1.2392 0.0782
21 1 6.0569 -2.2170 -0.8151
22 1 7.9095 -0.6655 -0.6156
23 1 7.1683 -1.9237 1.3205
24 1 -0.3633 -1.0276 0.0005
25 1 -0.3633 0.5139 0.8900
26 1 -0.3633 0.5138 -0.8900
27 1 0.2191 2.3158 0.0092
28 1 2.8483 6.1525 0.0019
29 1 1.5097 8.2129 0.0048
30 1 -0.6853 9.2124 0.0073
31 1 -2.0960 8.3001 0.0016
32 1 -2.0847 5.8882 0.0127
33 1 -0.7545 3.8223 -0.0006
34 1 3.8235 4.6488 0.0012
35 1 5.1650 2.6140 0.0004
36 1 6.8190 1.1218 1.6476
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001241542722.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:54:06
Heat of formation + Delta-G solvation = -14.768118 kcal
Electronic energy + Delta-G solvation = -19348.478269 eV
Core-core repulsion = 16375.298542 eV
Total energy + Delta-G solvation = -2973.179727 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 269.116 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-40.70322 -39.82190 -37.86173 -36.07859 -34.78175 -32.04250 -31.92081 -30.48657
-29.18110 -28.04427 -26.24960 -23.92578 -23.46130 -21.90809 -21.53666 -19.40999
-18.38809 -17.83365 -17.57808 -16.98788 -16.44047 -16.21852 -15.94759 -15.77780
-14.80124 -14.70038 -14.61658 -14.16244 -14.12199 -13.88158 -13.63337 -13.27650
-12.86352 -12.82821 -12.64375 -12.36171 -12.10224 -11.96496 -11.91556 -11.33233
-11.26380 -11.21246 -10.91629 -9.77145 -9.46006 -8.92721 -8.61019 -8.02872
-6.11970 0.28620 0.64805 1.16368 1.23792 1.39469 1.54854 1.61951
2.23453 2.69461 2.92593 3.14407 3.20488 3.77942 4.02448 4.18057
4.23838 4.34955 4.48614 4.49428 4.56785 4.69799 4.71113 4.75418
4.98526 5.10004 5.18180 5.27057 5.37503 5.41749 5.50787 5.58303
5.77798 5.88230 5.98101 6.13185 6.30186 6.32372 6.54514 6.72625
6.79247 6.90357 7.12588 7.24883 8.34076
Molecular weight = 269.12amu
Principal moments of inertia in cm(-1)
A = 0.027626 B = 0.004648 C = 0.004026
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1013.309331 B = 6022.775073 C = 6953.058592
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.340 6.340
3 C -0.003 4.003
4 C -0.167 4.167
5 C -0.142 4.142
6 C -0.083 4.083
7 C -0.093 4.093
8 C -0.196 4.196
9 C 0.197 3.803
10 N -0.867 5.867
11 C -0.195 4.195
12 C -0.093 4.093
13 C -0.118 4.118
14 C -0.167 4.167
15 C 0.062 3.938
16 C -0.476 4.476
17 H 0.071 0.929
18 C 0.033 3.967
19 N -0.822 5.822
20 Si 0.983 3.017
21 H -0.262 1.262
22 H -0.261 1.261
23 H -0.265 1.265
24 H 0.112 0.888
25 H 0.049 0.951
26 H 0.052 0.948
27 H 0.127 0.873
28 H 0.119 0.881
29 H 0.138 0.862
30 H 0.405 0.595
31 H 0.406 0.594
32 H 0.140 0.860
33 H 0.120 0.880
34 H 0.112 0.888
35 H 0.109 0.891
36 H 0.289 0.711
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.321 9.289 -1.898 14.015
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.069 4.069
2 O -0.255 6.255
3 C -0.047 4.047
4 C -0.186 4.186
5 C -0.144 4.144
6 C -0.085 4.085
7 C -0.112 4.112
8 C -0.219 4.219
9 C 0.092 3.908
10 N -0.408 5.408
11 C -0.218 4.218
12 C -0.111 4.111
13 C -0.137 4.137
14 C -0.187 4.187
15 C 0.059 3.941
16 C -0.505 4.505
17 H 0.089 0.911
18 C -0.181 4.181
19 N -0.448 5.448
20 Si 0.803 3.197
21 H -0.185 1.185
22 H -0.185 1.185
23 H -0.190 1.190
24 H 0.131 0.869
25 H 0.067 0.933
26 H 0.070 0.930
27 H 0.145 0.855
28 H 0.137 0.863
29 H 0.156 0.844
30 H 0.235 0.765
31 H 0.235 0.765
32 H 0.158 0.842
33 H 0.138 0.862
34 H 0.130 0.870
35 H 0.127 0.873
36 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -10.035 9.163 -1.745 13.700
hybrid contribution 0.374 -0.298 0.036 0.480
sum -9.661 8.865 -1.709 13.222
Atomic orbital electron populations
1.23082 0.78740 1.04227 1.00872 1.85911 1.21418 1.27790 1.90391
1.19249 0.92225 0.83930 1.09341 1.20945 0.98645 0.91445 1.07519
1.18252 0.92335 0.91702 1.12073 1.18741 0.93239 0.92073 1.04433
1.21104 0.99795 0.91579 0.98735 1.20666 0.92233 0.98599 1.10384
1.17854 0.90918 0.87734 0.94333 1.42249 1.08816 1.04771 1.84948
1.20666 1.00153 0.90625 1.10348 1.21064 0.92625 0.98486 0.98939
1.20686 0.93309 0.97387 1.02293 1.20722 0.99208 0.91310 1.07422
1.17498 0.88884 0.94626 0.93083 1.19583 0.98357 0.96576 1.36003
0.91106 1.26750 0.99895 0.99521 0.91960 1.69893 1.20019 1.32407
1.22488 0.85153 0.77428 0.77884 0.79202 1.18523 1.18512 1.18951
0.86927 0.93288 0.92958 0.85515 0.86337 0.84422 0.76521 0.76474
0.84205 0.86189 0.87030 0.87284 0.90011
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.86 9.81 113.37 1.11 1.98 16
2 O -0.34 -16.28 9.77 -90.03 -0.88 -17.16 16
3 C 0.00 -0.16 6.71 23.00 0.15 -0.01 16
4 C -0.17 -7.69 8.40 22.55 0.19 -7.50 16
5 C -0.14 -6.51 5.89 -19.90 -0.12 -6.63 16
6 C -0.08 -3.18 5.88 -20.01 -0.12 -3.30 16
7 C -0.09 -3.18 9.42 22.50 0.21 -2.97 16
8 C -0.20 -5.37 9.87 22.37 0.22 -5.15 16
9 C 0.20 4.84 6.76 38.39 0.26 5.10 16
10 N -0.87 -13.58 9.07 -51.26 -0.47 -14.04 16
11 C -0.20 -5.18 9.87 22.37 0.22 -4.96 16
12 C -0.09 -3.04 9.41 22.50 0.21 -2.83 16
13 C -0.12 -5.75 9.34 22.23 0.21 -5.55 16
14 C -0.17 -9.11 8.61 22.43 0.19 -8.92 16
15 C 0.06 3.52 5.58 -21.18 -0.12 3.40 16
16 C -0.48 -27.13 8.69 23.31 0.20 -26.93 16
17 H 0.07 4.05 7.64 -2.91 -0.02 4.03 16
18 C 0.03 1.74 5.13 85.25 0.44 2.18 16
19 N -0.82 -43.98 10.97 21.83 0.24 -43.74 16
20 Si 0.98 39.62 29.60 68.60 2.03 41.65 16
21 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16
22 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16
23 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16
24 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16
25 H 0.05 1.54 7.65 -2.39 -0.02 1.52 16
26 H 0.05 1.60 7.67 -2.39 -0.02 1.58 16
27 H 0.13 4.97 4.40 -2.91 -0.01 4.96 16
28 H 0.12 3.96 6.16 -2.91 -0.02 3.95 16
29 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16
30 H 0.41 4.75 8.83 -92.71 -0.82 3.93 16
31 H 0.41 4.64 8.84 -92.71 -0.82 3.82 16
32 H 0.14 2.85 8.06 -2.91 -0.02 2.82 16
33 H 0.12 3.72 6.17 -2.91 -0.02 3.70 16
34 H 0.11 4.82 6.16 -2.91 -0.02 4.80 16
35 H 0.11 6.13 6.17 -2.91 -0.02 6.11 16
36 H 0.29 13.85 8.30 -92.70 -0.77 13.08 16
Total: -1.00 -67.30 302.37 3.70 -63.60
By element:
Atomic # 1 Polarization: 32.28 SS G_CDS: -0.50 Total: 31.78 kcal
Atomic # 6 Polarization: -65.35 SS G_CDS: 3.27 Total: -62.09 kcal
Atomic # 7 Polarization: -57.56 SS G_CDS: -0.23 Total: -57.79 kcal
Atomic # 8 Polarization: -16.28 SS G_CDS: -0.88 Total: -17.16 kcal
Atomic # 14 Polarization: 39.62 SS G_CDS: 2.03 Total: 41.65 kcal
Total: -67.30 3.70 -63.60 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001241542722.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 48.833 kcal
(2) G-P(sol) polarization free energy of solvation -67.298 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.465 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.697 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.601 kcal
(6) G-S(sol) free energy of system = (1) + (5) -14.768 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds