Wall clock time and date at job start Mon Mar 30 2020 00:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35684 * 117.00372 * 2 1 4 4 C 1.37910 * 120.18732 * 0.25895 * 3 2 1 5 5 C 1.39707 * 119.92756 * 180.23143 * 4 3 2 6 6 C 1.47892 * 119.84344 * 179.78220 * 5 4 3 7 7 C 1.39712 * 120.06428 * 179.72372 * 6 5 4 8 8 C 1.37710 * 119.93338 * 180.02562 * 7 6 5 9 9 C 1.39164 * 120.06526 * 359.97438 * 8 7 6 10 10 N 1.39355 * 119.93280 * 179.97438 * 9 8 7 11 11 C 1.39152 * 120.13247 * 0.27791 * 9 8 7 12 12 C 1.37720 * 120.06772 * 359.44672 * 11 9 8 13 13 C 1.40142 * 120.31058 * 359.50822 * 5 4 3 14 14 C 1.36078 * 120.38285 * 0.25695 * 13 5 4 15 15 C 1.40925 * 120.06439 * 359.97438 * 14 13 5 16 16 C 1.40815 * 120.15218 * 180.02562 * 15 14 13 17 17 H 1.08006 * 119.99626 * 204.95157 * 16 15 14 18 18 C 1.39943 * 120.00192 * 24.95200 * 16 15 14 19 19 N 1.30864 * 119.99890 * 17.85035 * 18 16 15 20 20 Si 1.86809 * 120.00008 * 197.84793 * 18 16 15 21 21 H 1.48491 * 109.46868 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46669 * 120.00170 * 20 18 16 23 23 H 1.48500 * 109.46910 * 240.00121 * 20 18 16 24 24 H 1.08997 * 109.47184 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46858 * 300.00145 * 1 2 3 26 26 H 1.08996 * 109.47031 * 60.00059 * 1 2 3 27 27 H 1.08000 * 120.03621 * 359.97438 * 4 3 2 28 28 H 1.07996 * 120.03451 * 0.02562 * 7 6 5 29 29 H 1.08000 * 119.96701 * 179.97438 * 8 7 6 30 30 H 0.96997 * 120.00159 * 359.97438 * 10 9 8 31 31 H 0.97002 * 119.99950 * 179.73174 * 10 9 8 32 32 H 1.08000 * 119.97073 * 179.70714 * 11 9 8 33 33 H 1.07992 * 120.03625 * 180.29934 * 12 11 9 34 34 H 1.08002 * 119.80867 * 180.27762 * 13 5 4 35 35 H 1.08002 * 119.96745 * 180.02562 * 14 13 5 36 36 H 0.97008 * 120.00126 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2089 0.0000 4 6 1.2979 2.3680 0.0054 5 6 1.9378 3.6099 0.0005 6 6 1.1346 4.8517 0.0014 7 6 1.7698 6.0961 0.0023 8 6 1.0193 7.2507 0.0037 9 6 -0.3705 7.1788 0.0036 10 7 -1.1273 8.3490 0.0056 11 6 -1.0060 5.9409 0.0080 12 6 -0.2608 4.7828 0.0009 13 6 3.3372 3.6844 0.0005 14 6 4.0869 2.5488 0.0000 15 6 3.4580 1.2876 0.0000 16 6 4.2320 0.1113 0.0001 17 1 3.8203 -0.8060 -0.3945 18 6 5.5346 0.1307 0.5113 19 7 5.9162 1.1085 1.2928 20 14 6.7285 -1.2392 0.0782 21 1 6.0569 -2.2170 -0.8151 22 1 7.9095 -0.6655 -0.6156 23 1 7.1683 -1.9237 1.3205 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.2191 2.3158 0.0092 28 1 2.8483 6.1525 0.0019 29 1 1.5097 8.2129 0.0048 30 1 -0.6853 9.2124 0.0073 31 1 -2.0960 8.3001 0.0016 32 1 -2.0847 5.8882 0.0127 33 1 -0.7545 3.8223 -0.0006 34 1 3.8235 4.6488 0.0012 35 1 5.1650 2.6140 0.0004 36 1 6.8190 1.1218 1.6476 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241542722.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:06 Heat of formation + Delta-G solvation = -14.768118 kcal Electronic energy + Delta-G solvation = -19348.478269 eV Core-core repulsion = 16375.298542 eV Total energy + Delta-G solvation = -2973.179727 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.70322 -39.82190 -37.86173 -36.07859 -34.78175 -32.04250 -31.92081 -30.48657 -29.18110 -28.04427 -26.24960 -23.92578 -23.46130 -21.90809 -21.53666 -19.40999 -18.38809 -17.83365 -17.57808 -16.98788 -16.44047 -16.21852 -15.94759 -15.77780 -14.80124 -14.70038 -14.61658 -14.16244 -14.12199 -13.88158 -13.63337 -13.27650 -12.86352 -12.82821 -12.64375 -12.36171 -12.10224 -11.96496 -11.91556 -11.33233 -11.26380 -11.21246 -10.91629 -9.77145 -9.46006 -8.92721 -8.61019 -8.02872 -6.11970 0.28620 0.64805 1.16368 1.23792 1.39469 1.54854 1.61951 2.23453 2.69461 2.92593 3.14407 3.20488 3.77942 4.02448 4.18057 4.23838 4.34955 4.48614 4.49428 4.56785 4.69799 4.71113 4.75418 4.98526 5.10004 5.18180 5.27057 5.37503 5.41749 5.50787 5.58303 5.77798 5.88230 5.98101 6.13185 6.30186 6.32372 6.54514 6.72625 6.79247 6.90357 7.12588 7.24883 8.34076 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.027626 B = 0.004648 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.309331 B = 6022.775073 C = 6953.058592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.340 6.340 3 C -0.003 4.003 4 C -0.167 4.167 5 C -0.142 4.142 6 C -0.083 4.083 7 C -0.093 4.093 8 C -0.196 4.196 9 C 0.197 3.803 10 N -0.867 5.867 11 C -0.195 4.195 12 C -0.093 4.093 13 C -0.118 4.118 14 C -0.167 4.167 15 C 0.062 3.938 16 C -0.476 4.476 17 H 0.071 0.929 18 C 0.033 3.967 19 N -0.822 5.822 20 Si 0.983 3.017 21 H -0.262 1.262 22 H -0.261 1.261 23 H -0.265 1.265 24 H 0.112 0.888 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.127 0.873 28 H 0.119 0.881 29 H 0.138 0.862 30 H 0.405 0.595 31 H 0.406 0.594 32 H 0.140 0.860 33 H 0.120 0.880 34 H 0.112 0.888 35 H 0.109 0.891 36 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.321 9.289 -1.898 14.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.255 6.255 3 C -0.047 4.047 4 C -0.186 4.186 5 C -0.144 4.144 6 C -0.085 4.085 7 C -0.112 4.112 8 C -0.219 4.219 9 C 0.092 3.908 10 N -0.408 5.408 11 C -0.218 4.218 12 C -0.111 4.111 13 C -0.137 4.137 14 C -0.187 4.187 15 C 0.059 3.941 16 C -0.505 4.505 17 H 0.089 0.911 18 C -0.181 4.181 19 N -0.448 5.448 20 Si 0.803 3.197 21 H -0.185 1.185 22 H -0.185 1.185 23 H -0.190 1.190 24 H 0.131 0.869 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.145 0.855 28 H 0.137 0.863 29 H 0.156 0.844 30 H 0.235 0.765 31 H 0.235 0.765 32 H 0.158 0.842 33 H 0.138 0.862 34 H 0.130 0.870 35 H 0.127 0.873 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.035 9.163 -1.745 13.700 hybrid contribution 0.374 -0.298 0.036 0.480 sum -9.661 8.865 -1.709 13.222 Atomic orbital electron populations 1.23082 0.78740 1.04227 1.00872 1.85911 1.21418 1.27790 1.90391 1.19249 0.92225 0.83930 1.09341 1.20945 0.98645 0.91445 1.07519 1.18252 0.92335 0.91702 1.12073 1.18741 0.93239 0.92073 1.04433 1.21104 0.99795 0.91579 0.98735 1.20666 0.92233 0.98599 1.10384 1.17854 0.90918 0.87734 0.94333 1.42249 1.08816 1.04771 1.84948 1.20666 1.00153 0.90625 1.10348 1.21064 0.92625 0.98486 0.98939 1.20686 0.93309 0.97387 1.02293 1.20722 0.99208 0.91310 1.07422 1.17498 0.88884 0.94626 0.93083 1.19583 0.98357 0.96576 1.36003 0.91106 1.26750 0.99895 0.99521 0.91960 1.69893 1.20019 1.32407 1.22488 0.85153 0.77428 0.77884 0.79202 1.18523 1.18512 1.18951 0.86927 0.93288 0.92958 0.85515 0.86337 0.84422 0.76521 0.76474 0.84205 0.86189 0.87030 0.87284 0.90011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 9.81 113.37 1.11 1.98 16 2 O -0.34 -16.28 9.77 -90.03 -0.88 -17.16 16 3 C 0.00 -0.16 6.71 23.00 0.15 -0.01 16 4 C -0.17 -7.69 8.40 22.55 0.19 -7.50 16 5 C -0.14 -6.51 5.89 -19.90 -0.12 -6.63 16 6 C -0.08 -3.18 5.88 -20.01 -0.12 -3.30 16 7 C -0.09 -3.18 9.42 22.50 0.21 -2.97 16 8 C -0.20 -5.37 9.87 22.37 0.22 -5.15 16 9 C 0.20 4.84 6.76 38.39 0.26 5.10 16 10 N -0.87 -13.58 9.07 -51.26 -0.47 -14.04 16 11 C -0.20 -5.18 9.87 22.37 0.22 -4.96 16 12 C -0.09 -3.04 9.41 22.50 0.21 -2.83 16 13 C -0.12 -5.75 9.34 22.23 0.21 -5.55 16 14 C -0.17 -9.11 8.61 22.43 0.19 -8.92 16 15 C 0.06 3.52 5.58 -21.18 -0.12 3.40 16 16 C -0.48 -27.13 8.69 23.31 0.20 -26.93 16 17 H 0.07 4.05 7.64 -2.91 -0.02 4.03 16 18 C 0.03 1.74 5.13 85.25 0.44 2.18 16 19 N -0.82 -43.98 10.97 21.83 0.24 -43.74 16 20 Si 0.98 39.62 29.60 68.60 2.03 41.65 16 21 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 22 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 23 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 24 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 25 H 0.05 1.54 7.65 -2.39 -0.02 1.52 16 26 H 0.05 1.60 7.67 -2.39 -0.02 1.58 16 27 H 0.13 4.97 4.40 -2.91 -0.01 4.96 16 28 H 0.12 3.96 6.16 -2.91 -0.02 3.95 16 29 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 30 H 0.41 4.75 8.83 -92.71 -0.82 3.93 16 31 H 0.41 4.64 8.84 -92.71 -0.82 3.82 16 32 H 0.14 2.85 8.06 -2.91 -0.02 2.82 16 33 H 0.12 3.72 6.17 -2.91 -0.02 3.70 16 34 H 0.11 4.82 6.16 -2.91 -0.02 4.80 16 35 H 0.11 6.13 6.17 -2.91 -0.02 6.11 16 36 H 0.29 13.85 8.30 -92.70 -0.77 13.08 16 Total: -1.00 -67.30 302.37 3.70 -63.60 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: -0.50 Total: 31.78 kcal Atomic # 6 Polarization: -65.35 SS G_CDS: 3.27 Total: -62.09 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: -0.23 Total: -57.79 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -0.88 Total: -17.16 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 2.03 Total: 41.65 kcal Total: -67.30 3.70 -63.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241542722.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.833 kcal (2) G-P(sol) polarization free energy of solvation -67.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds