Wall clock time and date at job start Mon Mar 30 2020 01:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86808 * 120.00260 * 2 1 4 4 H 1.48498 * 109.47240 * 270.00555 * 3 2 1 5 5 H 1.48500 * 109.46728 * 30.00418 * 3 2 1 6 6 H 1.48499 * 109.47146 * 150.00071 * 3 2 1 7 7 C 1.39935 * 120.00148 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00204 * 197.89331 * 7 2 1 9 9 C 1.41423 * 119.99603 * 17.89600 * 7 2 1 10 10 C 1.40793 * 120.18695 * 24.47776 * 9 7 2 11 11 C 1.37676 * 119.98053 * 180.02562 * 10 9 7 12 12 C 1.38453 * 120.36971 * 359.72295 * 11 10 9 13 13 C 1.39654 * 120.38004 * 0.55206 * 12 11 10 14 14 C 1.48491 * 119.99207 * 179.72729 * 13 12 11 15 15 C 1.40848 * 126.22087 * 179.72735 * 14 13 12 16 16 N 1.30676 * 108.09646 * 179.71490 * 15 14 13 17 17 N 1.40005 * 108.52217 * 0.44028 * 16 15 14 18 18 C 1.46500 * 125.89552 * 179.81360 * 17 16 15 19 19 C 1.53929 * 113.73696 * 191.41743 * 18 17 16 20 20 N 1.47963 * 86.18349 * 221.92125 * 19 18 17 21 21 C 1.47959 * 90.76274 * 24.69063 * 20 19 18 22 22 C 1.34825 * 108.21349 * 359.55064 * 17 16 15 23 23 C 1.38720 * 120.01176 * 359.44816 * 13 12 11 24 24 H 0.97002 * 119.99629 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.01390 * 0.03720 * 10 9 7 26 26 H 1.07997 * 119.81721 * 180.02562 * 11 10 9 27 27 H 1.08006 * 119.80501 * 180.30091 * 12 11 10 28 28 H 1.07999 * 125.95072 * 0.03385 * 15 14 13 29 29 H 1.09005 * 112.93740 * 323.12796 * 18 17 16 30 30 H 1.08996 * 113.75952 * 336.24056 * 19 18 17 31 31 H 1.09007 * 113.75732 * 107.60252 * 19 18 17 32 32 H 1.00900 * 111.00171 * 271.79656 * 20 19 18 33 33 H 1.08996 * 113.76236 * 220.99205 * 21 20 19 34 34 H 1.08994 * 113.75866 * 89.62695 * 21 20 19 35 35 H 1.08001 * 126.19709 * 180.28425 * 22 17 16 36 36 H 1.08005 * 120.18794 * 180.29700 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.4898 2.0465 -1.4000 5 1 1.4398 2.6526 0.7001 6 1 3.5399 1.4401 0.7000 7 6 2.0080 -1.2119 -0.0005 8 1 3.0488 -1.2346 0.2868 9 6 1.3521 -2.4068 -0.3774 10 6 0.2220 -2.3599 -1.2158 11 6 -0.4135 -3.5258 -1.5797 12 6 0.0556 -4.7484 -1.1302 13 6 1.1719 -4.8123 -0.2934 14 6 1.6640 -6.1277 0.1885 15 6 2.7744 -6.3444 1.0275 16 7 2.8838 -7.6304 1.2319 17 7 1.8625 -8.2810 0.5292 18 6 1.6331 -9.7274 0.4904 19 6 0.6152 -10.1648 -0.5783 20 7 0.0814 -11.0861 0.4492 21 6 0.6075 -10.2202 1.5274 22 6 1.1230 -7.3462 -0.1009 23 6 1.8244 -3.6474 0.0830 24 1 -0.4850 0.8401 0.0004 25 1 -0.1462 -1.4098 -1.5736 26 1 -1.2799 -3.4868 -2.2232 27 1 -0.4471 -5.6577 -1.4252 28 1 3.4195 -5.5804 1.4355 29 1 2.5580 -10.3041 0.4798 30 1 -0.0821 -9.3790 -0.8683 31 1 1.0652 -10.6721 -1.4318 32 1 0.5653 -11.9712 0.4277 33 1 1.0514 -10.7715 2.3563 34 1 -0.0920 -9.4505 1.8531 35 1 0.2585 -7.5289 -0.7220 36 1 2.6908 -3.6938 0.7262 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241602256.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:14 Heat of formation + Delta-G solvation = 133.254719 kcal Electronic energy + Delta-G solvation = -19119.493431 eV Core-core repulsion = 16185.025207 eV Total energy + Delta-G solvation = -2934.468224 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.19937 -39.32830 -37.26975 -33.76050 -32.02386 -30.81917 -29.78643 -28.05508 -26.48699 -26.01108 -25.19875 -22.36015 -21.56905 -20.59270 -19.72069 -19.24350 -17.61747 -17.05318 -16.48616 -15.32294 -14.99734 -14.73907 -14.27798 -13.90522 -13.76054 -13.35176 -13.10283 -12.97789 -12.59093 -12.35903 -12.05786 -11.99795 -11.66156 -11.44902 -11.12742 -11.07096 -10.66502 -10.43939 -10.40157 -9.64414 -9.35374 -9.28600 -9.18333 -9.02951 -8.58821 -7.43475 -6.78780 -6.68625 -4.32129 2.00465 2.61498 2.63419 2.85268 3.09948 3.13523 3.23366 3.42383 3.78980 3.91626 3.96956 4.35717 4.71442 4.73311 4.93054 5.09441 5.15927 5.28584 5.38029 5.41282 5.64290 5.77635 5.91544 5.98502 6.28592 6.40654 6.46918 6.75262 6.90504 6.99447 7.10166 7.19138 7.35185 7.41425 7.63845 7.90557 8.00305 8.07386 8.14634 8.33907 8.67231 8.93859 9.00644 10.23297 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.041429 B = 0.003720 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.691804 B = 7524.402875 C = 7990.546049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.077 3.923 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.465 4.465 8 H 0.077 0.923 9 C 0.111 3.889 10 C -0.163 4.163 11 C -0.105 4.105 12 C -0.231 4.231 13 C 0.007 3.993 14 C -0.158 4.158 15 C 0.061 3.939 16 N -0.309 5.309 17 N -0.374 5.374 18 C 0.099 3.901 19 C 0.015 3.985 20 N -0.649 5.649 21 C 0.012 3.988 22 C 0.046 3.954 23 C -0.210 4.210 24 H 0.279 0.721 25 H 0.117 0.883 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.184 0.816 29 H 0.116 0.884 30 H 0.110 0.890 31 H 0.088 0.912 32 H 0.341 0.659 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.171 0.829 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.151 -14.670 -0.443 14.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.495 4.495 8 H 0.095 0.905 9 C 0.109 3.891 10 C -0.183 4.183 11 C -0.123 4.123 12 C -0.251 4.251 13 C 0.005 3.995 14 C -0.169 4.169 15 C -0.126 4.126 16 N -0.129 5.129 17 N -0.157 5.157 18 C -0.006 4.006 19 C -0.116 4.116 20 N -0.277 5.277 21 C -0.119 4.119 22 C -0.098 4.098 23 C -0.230 4.230 24 H 0.090 0.910 25 H 0.135 0.865 26 H 0.106 0.894 27 H 0.102 0.898 28 H 0.200 0.800 29 H 0.134 0.866 30 H 0.129 0.871 31 H 0.106 0.894 32 H 0.156 0.844 33 H 0.102 0.898 34 H 0.124 0.876 35 H 0.188 0.812 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.735 -15.521 0.159 15.539 hybrid contribution 0.885 1.353 -0.349 1.654 sum 1.621 -14.168 -0.191 14.261 Atomic orbital electron populations 1.69833 1.07549 1.29068 1.35653 1.25880 0.94686 1.01207 0.92287 0.86343 0.80524 0.80758 0.79256 1.19344 1.20416 1.18646 1.19565 0.98158 0.91247 1.40551 0.90456 1.17519 0.91164 0.91830 0.88605 1.21365 0.99264 0.96826 1.00841 1.20588 0.98610 0.93194 0.99923 1.20264 1.00999 0.95995 1.07858 1.17642 0.95487 0.89038 0.97312 1.19297 0.99061 0.93350 1.05195 1.24025 0.97804 0.93097 0.97640 1.77121 1.09762 1.07387 1.18638 1.48349 1.23219 1.05208 1.38910 1.24871 0.99626 0.78165 0.97912 1.24206 0.94934 0.97164 0.95292 1.65135 1.55243 1.04157 1.03140 1.24252 0.95357 0.97141 0.95123 1.22342 0.98702 0.88464 1.00287 1.20928 1.03540 0.91866 1.06708 0.90976 0.86518 0.89420 0.89769 0.79959 0.86631 0.87148 0.89369 0.84410 0.89775 0.87571 0.81244 0.88842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.61 10.96 55.55 0.61 -20.00 16 2 C 0.08 1.93 5.14 -17.35 -0.09 1.84 16 3 Si 0.91 18.70 29.60 -169.99 -5.03 13.67 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.47 -12.32 9.05 -37.73 -0.34 -12.66 16 8 H 0.08 1.97 7.91 -52.49 -0.42 1.55 16 9 C 0.11 2.95 5.57 -106.86 -0.60 2.35 16 10 C -0.16 -4.24 8.69 -38.82 -0.34 -4.58 16 11 C -0.10 -2.44 10.01 -39.71 -0.40 -2.84 16 12 C -0.23 -5.09 9.57 -38.97 -0.37 -5.46 16 13 C 0.01 0.15 5.87 -104.96 -0.62 -0.47 16 14 C -0.16 -3.03 6.04 -105.34 -0.64 -3.67 16 15 C 0.06 1.10 11.41 -17.06 -0.19 0.90 16 16 N -0.31 -5.30 12.54 30.80 0.39 -4.91 16 17 N -0.37 -5.49 3.80 -55.74 -0.21 -5.71 16 18 C 0.10 1.02 5.20 -69.62 -0.36 0.66 16 19 C 0.01 0.12 8.25 -2.77 -0.02 0.10 16 20 N -0.65 -5.41 8.55 -117.15 -1.00 -6.41 16 21 C 0.01 0.11 8.70 -2.76 -0.02 0.09 16 22 C 0.05 0.73 10.07 -16.89 -0.17 0.56 16 23 C -0.21 -5.12 9.32 -38.55 -0.36 -5.48 16 24 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 25 H 0.12 3.12 6.15 -52.49 -0.32 2.80 16 26 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 27 H 0.08 1.60 6.99 -52.48 -0.37 1.24 16 28 H 0.18 2.99 7.34 -52.49 -0.39 2.60 16 29 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.11 1.02 6.28 -51.93 -0.33 0.69 16 31 H 0.09 0.58 8.14 -51.92 -0.42 0.16 16 32 H 0.34 2.03 8.89 -39.29 -0.35 1.69 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.17 2.31 5.87 -52.49 -0.31 2.00 16 36 H 0.09 2.13 7.04 -52.48 -0.37 1.76 16 LS Contribution 305.06 15.07 4.60 4.60 Total: -1.00 -29.66 305.06 -9.26 -38.93 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -4.09 Total: 8.49 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: -4.52 Total: -28.66 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: -0.22 Total: -37.03 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.66 -9.26 -38.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241602256.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.182 kcal (2) G-P(sol) polarization free energy of solvation -29.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds