Wall clock time and date at job start Mon Mar 30 2020 01:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86808 * 120.00260 * 2 1 4 4 H 1.48498 * 109.47240 * 270.00555 * 3 2 1 5 5 H 1.48500 * 109.46728 * 30.00418 * 3 2 1 6 6 H 1.48499 * 109.47146 * 150.00071 * 3 2 1 7 7 C 1.39935 * 120.00148 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00204 * 197.89331 * 7 2 1 9 9 C 1.41423 * 119.99603 * 17.89600 * 7 2 1 10 10 C 1.40793 * 120.18695 * 24.47776 * 9 7 2 11 11 C 1.37676 * 119.98053 * 180.02562 * 10 9 7 12 12 C 1.38453 * 120.36971 * 359.72295 * 11 10 9 13 13 C 1.39654 * 120.38004 * 0.55206 * 12 11 10 14 14 C 1.48491 * 119.99207 * 179.72729 * 13 12 11 15 15 C 1.40848 * 126.22087 * 179.72735 * 14 13 12 16 16 N 1.30676 * 108.09646 * 179.71490 * 15 14 13 17 17 N 1.40005 * 108.52217 * 0.44028 * 16 15 14 18 18 C 1.46500 * 125.89552 * 179.81360 * 17 16 15 19 19 C 1.53929 * 113.73696 * 191.41743 * 18 17 16 20 20 N 1.47963 * 86.18349 * 221.92125 * 19 18 17 21 21 C 1.47959 * 90.76274 * 24.69063 * 20 19 18 22 22 C 1.34825 * 108.21349 * 359.55064 * 17 16 15 23 23 C 1.38720 * 120.01176 * 359.44816 * 13 12 11 24 24 H 0.97002 * 119.99629 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.01390 * 0.03720 * 10 9 7 26 26 H 1.07997 * 119.81721 * 180.02562 * 11 10 9 27 27 H 1.08006 * 119.80501 * 180.30091 * 12 11 10 28 28 H 1.07999 * 125.95072 * 0.03385 * 15 14 13 29 29 H 1.09005 * 112.93740 * 323.12796 * 18 17 16 30 30 H 1.08996 * 113.75952 * 336.24056 * 19 18 17 31 31 H 1.09007 * 113.75732 * 107.60252 * 19 18 17 32 32 H 1.00900 * 111.00171 * 271.79656 * 20 19 18 33 33 H 1.08996 * 113.76236 * 220.99205 * 21 20 19 34 34 H 1.08994 * 113.75866 * 89.62695 * 21 20 19 35 35 H 1.08001 * 126.19709 * 180.28425 * 22 17 16 36 36 H 1.08005 * 120.18794 * 180.29700 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.4898 2.0465 -1.4000 5 1 1.4398 2.6526 0.7001 6 1 3.5399 1.4401 0.7000 7 6 2.0080 -1.2119 -0.0005 8 1 3.0488 -1.2346 0.2868 9 6 1.3521 -2.4068 -0.3774 10 6 0.2220 -2.3599 -1.2158 11 6 -0.4135 -3.5258 -1.5797 12 6 0.0556 -4.7484 -1.1302 13 6 1.1719 -4.8123 -0.2934 14 6 1.6640 -6.1277 0.1885 15 6 2.7744 -6.3444 1.0275 16 7 2.8838 -7.6304 1.2319 17 7 1.8625 -8.2810 0.5292 18 6 1.6331 -9.7274 0.4904 19 6 0.6152 -10.1648 -0.5783 20 7 0.0814 -11.0861 0.4492 21 6 0.6075 -10.2202 1.5274 22 6 1.1230 -7.3462 -0.1009 23 6 1.8244 -3.6474 0.0830 24 1 -0.4850 0.8401 0.0004 25 1 -0.1462 -1.4098 -1.5736 26 1 -1.2799 -3.4868 -2.2232 27 1 -0.4471 -5.6577 -1.4252 28 1 3.4195 -5.5804 1.4355 29 1 2.5580 -10.3041 0.4798 30 1 -0.0821 -9.3790 -0.8683 31 1 1.0652 -10.6721 -1.4318 32 1 0.5653 -11.9712 0.4277 33 1 1.0514 -10.7715 2.3563 34 1 -0.0920 -9.4505 1.8531 35 1 0.2585 -7.5289 -0.7220 36 1 2.6908 -3.6938 0.7262 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241602256.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:13 Heat of formation + Delta-G solvation = 114.103794 kcal Electronic energy + Delta-G solvation = -19120.323877 eV Core-core repulsion = 16185.025207 eV Total energy + Delta-G solvation = -2935.298670 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.37652 -40.23748 -39.05012 -35.60019 -33.32271 -32.34229 -31.62182 -29.49867 -27.20879 -27.07840 -27.05341 -23.67095 -23.14778 -22.01551 -21.20849 -20.48083 -19.17452 -17.99191 -17.72638 -17.10364 -16.39679 -16.07450 -15.67168 -15.37694 -15.10421 -14.64379 -14.41233 -14.04714 -13.95140 -13.56505 -13.51924 -13.43404 -12.98180 -12.89462 -12.73223 -12.51341 -12.20150 -12.09207 -11.87344 -11.39452 -11.15128 -11.01945 -10.42005 -10.24122 -9.76902 -9.32624 -8.60322 -8.39369 -6.29596 0.59988 1.05097 1.09837 1.39869 1.52101 1.53026 1.53715 2.16835 2.24448 2.73090 2.86905 3.10826 3.64204 3.79865 3.87436 3.88486 4.13154 4.36426 4.44366 4.49871 4.55937 4.61201 4.72876 4.74736 4.78203 4.86991 4.91624 5.12662 5.17344 5.33850 5.57684 5.60357 5.80964 6.04960 6.11023 6.15411 6.23621 6.26394 6.45828 6.71352 6.76720 7.00956 7.10186 8.38737 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.041429 B = 0.003720 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.691804 B = 7524.402875 C = 7990.546049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.036 3.964 3 Si 0.980 3.020 4 H -0.263 1.263 5 H -0.268 1.268 6 H -0.259 1.259 7 C -0.505 4.505 8 H 0.073 0.927 9 C 0.082 3.918 10 C -0.196 4.196 11 C -0.106 4.106 12 C -0.231 4.231 13 C 0.014 3.986 14 C -0.202 4.202 15 C 0.050 3.950 16 N -0.322 5.322 17 N -0.361 5.361 18 C 0.084 3.916 19 C 0.022 3.978 20 N -0.651 5.651 21 C 0.016 3.984 22 C 0.072 3.928 23 C -0.233 4.233 24 H 0.286 0.714 25 H 0.099 0.901 26 H 0.113 0.887 27 H 0.122 0.878 28 H 0.185 0.815 29 H 0.132 0.868 30 H 0.105 0.895 31 H 0.112 0.888 32 H 0.357 0.643 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.200 0.800 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.881 -17.003 -0.931 17.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.178 4.178 3 Si 0.801 3.199 4 H -0.187 1.187 5 H -0.193 1.193 6 H -0.183 1.183 7 C -0.534 4.534 8 H 0.091 0.909 9 C 0.080 3.920 10 C -0.215 4.215 11 C -0.124 4.124 12 C -0.250 4.250 13 C 0.013 3.987 14 C -0.213 4.213 15 C -0.135 4.135 16 N -0.142 5.142 17 N -0.143 5.143 18 C -0.018 4.018 19 C -0.109 4.109 20 N -0.280 5.280 21 C -0.115 4.115 22 C -0.074 4.074 23 C -0.253 4.253 24 H 0.097 0.903 25 H 0.117 0.883 26 H 0.131 0.869 27 H 0.140 0.860 28 H 0.202 0.798 29 H 0.150 0.850 30 H 0.124 0.876 31 H 0.131 0.869 32 H 0.174 0.826 33 H 0.117 0.883 34 H 0.106 0.894 35 H 0.216 0.784 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.475 -17.910 -0.318 17.919 hybrid contribution 0.914 1.757 -0.188 1.989 sum 1.388 -16.153 -0.507 16.221 Atomic orbital electron populations 1.69892 1.08943 1.30323 1.36256 1.26712 0.95465 1.04364 0.91297 0.85236 0.79076 0.76113 0.79450 1.18727 1.19308 1.18327 1.19809 0.98315 0.92639 1.42667 0.90897 1.17867 0.91961 0.92842 0.89325 1.21320 1.00415 0.97217 1.02589 1.20900 0.98942 0.92891 0.99698 1.20672 1.00639 0.96867 1.06817 1.17917 0.94804 0.89939 0.96031 1.19195 1.01029 0.93076 1.07959 1.24107 0.97913 0.93689 0.97818 1.77089 1.10859 1.06962 1.19317 1.48782 1.21700 1.06782 1.37005 1.25513 1.01088 0.75540 0.99705 1.24247 0.93904 0.97108 0.95623 1.65101 1.55544 1.04755 1.02598 1.24157 0.94495 0.97074 0.95754 1.22674 0.98388 0.87601 0.98742 1.21090 1.04332 0.92287 1.07610 0.90300 0.88326 0.86918 0.86040 0.79812 0.84996 0.87644 0.86937 0.82633 0.88257 0.89405 0.78373 0.88676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.41 10.96 21.82 0.24 -44.18 16 2 C 0.04 1.86 5.14 85.25 0.44 2.30 16 3 Si 0.98 39.25 29.60 68.60 2.03 41.28 16 4 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 5 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 6 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 7 C -0.50 -28.05 9.05 23.47 0.21 -27.84 16 8 H 0.07 3.93 7.91 -2.91 -0.02 3.90 16 9 C 0.08 4.56 5.57 -21.32 -0.12 4.44 16 10 C -0.20 -10.53 8.69 22.76 0.20 -10.33 16 11 C -0.11 -4.92 10.01 22.19 0.22 -4.70 16 12 C -0.23 -9.82 9.57 22.66 0.22 -9.60 16 13 C 0.01 0.64 5.87 -20.09 -0.12 0.52 16 14 C -0.20 -7.52 6.04 -20.33 -0.12 -7.65 16 15 C 0.05 1.80 11.41 85.50 0.98 2.78 16 16 N -0.32 -10.58 12.54 -56.46 -0.71 -11.29 16 17 N -0.36 -9.66 3.80 -330.26 -1.26 -10.92 16 18 C 0.08 1.45 5.20 46.56 0.24 1.69 16 19 C 0.02 0.28 8.25 86.40 0.71 0.99 16 20 N -0.65 -8.44 8.55 -524.57 -4.49 -12.93 16 21 C 0.02 0.25 8.70 86.41 0.75 1.00 16 22 C 0.07 2.12 10.07 83.81 0.84 2.97 16 23 C -0.23 -11.79 9.32 22.94 0.21 -11.58 16 24 H 0.29 13.88 8.30 -92.71 -0.77 13.11 16 25 H 0.10 5.55 6.15 -2.91 -0.02 5.53 16 26 H 0.11 4.53 8.06 -2.91 -0.02 4.51 16 27 H 0.12 4.19 6.99 -2.91 -0.02 4.17 16 28 H 0.19 6.22 7.34 -2.91 -0.02 6.20 16 29 H 0.13 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.11 1.50 6.28 -2.39 -0.02 1.49 16 31 H 0.11 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.36 2.84 8.89 -89.69 -0.80 2.04 16 33 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.20 4.55 5.87 -2.91 -0.02 4.53 16 36 H 0.10 4.58 7.04 -2.91 -0.02 4.56 16 Total: -1.00 -66.43 305.06 0.81 -65.62 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: 0.32 Total: 27.41 kcal Atomic # 6 Polarization: -59.67 SS G_CDS: 4.67 Total: -55.00 kcal Atomic # 7 Polarization: -73.10 SS G_CDS: -6.21 Total: -79.31 kcal Atomic # 14 Polarization: 39.25 SS G_CDS: 2.03 Total: 41.28 kcal Total: -66.43 0.81 -65.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241602256.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.724 kcal (2) G-P(sol) polarization free energy of solvation -66.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds