Wall clock time and date at job start Mon Mar 30 2020 01:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30839 * 1 3 3 Si 1.86798 * 120.00122 * 2 1 4 4 H 1.48496 * 109.47126 * 274.65447 * 3 2 1 5 5 H 1.48498 * 109.47135 * 34.65446 * 3 2 1 6 6 H 1.48503 * 109.47303 * 154.65180 * 3 2 1 7 7 C 1.39944 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00064 * 162.11350 * 7 2 1 9 9 C 1.41028 * 119.99946 * 342.11406 * 7 2 1 10 10 C 1.40939 * 120.11740 * 155.00851 * 9 7 2 11 11 C 1.36227 * 119.87576 * 180.02562 * 10 9 7 12 12 C 1.39949 * 120.12306 * 0.02562 * 11 10 9 13 13 C 1.48000 * 119.88436 * 179.97438 * 12 11 10 14 14 C 1.41101 * 126.36321 * 0.02562 * 13 12 11 15 15 N 1.30552 * 108.11676 * 179.73731 * 14 13 12 16 16 N 1.39957 * 108.85018 * 0.38211 * 15 14 13 17 17 C 1.46498 * 125.81255 * 179.87581 * 16 15 14 18 18 C 1.53934 * 113.73576 * 167.96613 * 17 16 15 19 19 N 1.47954 * 86.18496 * 90.63489 * 18 17 16 20 20 C 1.47965 * 90.76110 * 24.69028 * 19 18 17 21 21 C 1.34695 * 108.37052 * 359.61187 * 16 15 14 22 22 C 1.39952 * 120.23695 * 0.26986 * 12 11 10 23 23 C 1.36238 * 120.11807 * 359.44498 * 22 12 11 24 24 H 0.96998 * 120.00028 * 359.97438 * 1 2 3 25 25 H 1.07996 * 120.05864 * 0.02562 * 10 9 7 26 26 H 1.08005 * 119.93776 * 180.02562 * 11 10 9 27 27 H 1.07999 * 125.94011 * 359.97438 * 14 13 12 28 28 H 1.09002 * 113.01164 * 36.32530 * 17 16 15 29 29 H 1.08992 * 113.76122 * 204.95567 * 18 17 16 30 30 H 1.09006 * 113.75605 * 336.31744 * 18 17 16 31 31 H 1.00899 * 111.00345 * 271.80004 * 19 18 17 32 32 H 1.09003 * 113.75825 * 220.98824 * 20 19 18 33 33 H 1.08996 * 113.75746 * 89.62890 * 20 19 18 34 34 H 1.08005 * 126.30377 * 180.22477 * 21 16 15 35 35 H 1.07998 * 119.93959 * 179.73264 * 22 12 11 36 36 H 1.07996 * 120.06189 * 180.25507 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3915 2.1032 -1.3954 5 1 1.4926 2.6222 0.7961 6 1 3.5857 1.4138 0.5994 7 6 2.0081 -1.2119 -0.0005 8 1 3.0489 -1.2344 -0.2878 9 6 1.3541 -2.4039 0.3740 10 6 1.8230 -3.6463 -0.0983 11 6 1.1871 -4.7946 0.2662 12 6 0.0700 -4.7422 1.1076 13 6 -0.6170 -5.9930 1.4998 14 6 -0.2622 -7.3010 1.1071 15 7 -1.1018 -8.1331 1.6613 16 7 -2.0270 -7.4050 2.4180 17 6 -3.1344 -7.9700 3.1930 18 6 -3.7994 -6.9628 4.1484 19 7 -4.7115 -6.6507 3.0260 20 6 -4.4749 -7.9870 2.4363 21 6 -1.7224 -6.0969 2.3170 22 6 -0.4035 -3.5108 1.5745 23 6 0.2284 -2.3568 1.2208 24 1 -0.4850 0.8400 0.0004 25 1 2.6847 -3.6878 -0.7479 26 1 1.5458 -5.7473 -0.0948 27 1 0.5630 -7.5677 0.4634 28 1 -2.8840 -8.9210 3.6630 29 1 -4.2949 -7.4273 5.0008 30 1 -3.1518 -6.1330 4.4318 31 1 -4.3285 -5.9240 2.4401 32 1 -4.3672 -7.9755 1.3517 33 1 -5.1681 -8.7511 2.7879 34 1 -2.2474 -5.2797 2.7894 35 1 -1.2685 -3.4756 2.2201 36 1 -0.1353 -1.4074 1.5850 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241603715.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:58 Heat of formation + Delta-G solvation = 133.479296 kcal Electronic energy + Delta-G solvation = -19246.238112 eV Core-core repulsion = 16311.779626 eV Total energy + Delta-G solvation = -2934.458485 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.23631 -39.07361 -37.40631 -33.90166 -31.66854 -30.83458 -29.44305 -28.62909 -26.75546 -26.38571 -24.79750 -22.26935 -21.54703 -20.76757 -19.49129 -19.08611 -17.40446 -17.21693 -15.96587 -15.61304 -15.21991 -14.68505 -14.23162 -13.99157 -13.83340 -13.66249 -13.29017 -12.77927 -12.62702 -12.31180 -11.92616 -11.77251 -11.62262 -11.36759 -11.19489 -11.13215 -10.83857 -10.67798 -10.31692 -9.67787 -9.41516 -9.30999 -9.18985 -8.92575 -8.46804 -7.57837 -6.94787 -6.78491 -4.35195 1.99193 2.53467 2.55010 2.97490 3.02706 3.08679 3.10188 3.56858 3.70418 3.86981 4.02502 4.64902 4.68039 4.86867 5.01191 5.16195 5.21912 5.38243 5.41846 5.62957 5.66199 5.70570 5.96544 6.04601 6.24370 6.26785 6.37695 6.87964 6.89197 6.99642 7.02325 7.22653 7.26967 7.35435 7.57674 7.87176 7.99199 8.00298 8.15853 8.22571 8.56271 8.80849 8.91719 10.08163 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.032202 B = 0.003973 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.293518 B = 7045.619276 C = 7723.299642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.455 4.455 8 H 0.079 0.921 9 C 0.113 3.887 10 C -0.226 4.226 11 C -0.072 4.072 12 C -0.156 4.156 13 C -0.120 4.120 14 C 0.044 3.956 15 N -0.303 5.303 16 N -0.367 5.367 17 C 0.094 3.906 18 C 0.015 3.985 19 N -0.659 5.659 20 C 0.011 3.989 21 C 0.004 3.996 22 C -0.085 4.085 23 C -0.167 4.167 24 H 0.282 0.718 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.181 0.819 28 H 0.103 0.897 29 H 0.118 0.882 30 H 0.086 0.914 31 H 0.344 0.656 32 H 0.081 0.919 33 H 0.113 0.887 34 H 0.166 0.834 35 H 0.084 0.916 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.725 -8.843 5.590 11.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.143 4.143 3 Si 0.732 3.268 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.483 4.483 8 H 0.098 0.902 9 C 0.111 3.889 10 C -0.245 4.245 11 C -0.091 4.091 12 C -0.158 4.158 13 C -0.130 4.130 14 C -0.142 4.142 15 N -0.123 5.123 16 N -0.151 5.151 17 C -0.011 4.011 18 C -0.116 4.116 19 N -0.288 5.288 20 C -0.120 4.120 21 C -0.138 4.138 22 C -0.104 4.104 23 C -0.186 4.186 24 H 0.093 0.907 25 H 0.111 0.889 26 H 0.107 0.893 27 H 0.197 0.803 28 H 0.121 0.879 29 H 0.136 0.864 30 H 0.104 0.896 31 H 0.160 0.840 32 H 0.099 0.901 33 H 0.131 0.869 34 H 0.183 0.817 35 H 0.102 0.898 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.171 -9.921 6.088 13.672 hybrid contribution 1.515 1.635 -0.551 2.295 sum -5.656 -8.287 5.537 11.460 Atomic orbital electron populations 1.69836 1.07670 1.29435 1.34096 1.25959 0.94736 1.01477 0.92177 0.86304 0.80819 0.80540 0.79157 1.19481 1.19949 1.18317 1.19617 0.98251 0.91380 1.39094 0.90250 1.17675 0.90979 0.92053 0.88226 1.20661 1.04071 0.92915 1.06884 1.20237 0.95109 0.96561 0.97170 1.17416 1.00465 0.89372 1.08578 1.19418 0.97564 0.93811 1.02253 1.23951 0.98919 0.91247 1.00099 1.76979 1.02988 1.20596 1.11744 1.47790 1.23571 1.04272 1.39449 1.23763 0.85635 0.99317 0.92425 1.24098 0.93524 0.97999 0.95989 1.65040 1.50386 1.05046 1.08305 1.24125 0.93782 0.93623 1.00473 1.22525 1.00490 0.86545 1.04270 1.20364 0.98181 0.92426 0.99408 1.20959 0.99558 0.96840 1.01273 0.90703 0.88880 0.89313 0.80256 0.87941 0.86402 0.89598 0.83968 0.90062 0.86931 0.81719 0.89767 0.86525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.71 10.97 55.55 0.61 -19.10 16 2 C 0.08 1.83 5.13 -17.34 -0.09 1.74 16 3 Si 0.91 18.04 29.60 -169.99 -5.03 13.01 16 4 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 5 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 6 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 7 C -0.45 -11.72 9.03 -37.89 -0.34 -12.06 16 8 H 0.08 1.96 7.91 -52.49 -0.41 1.55 16 9 C 0.11 2.94 5.57 -106.79 -0.59 2.35 16 10 C -0.23 -5.41 9.73 -39.28 -0.38 -5.79 16 11 C -0.07 -1.59 9.51 -39.66 -0.38 -1.96 16 12 C -0.16 -3.40 5.90 -104.61 -0.62 -4.02 16 13 C -0.12 -2.28 6.08 -104.95 -0.64 -2.92 16 14 C 0.04 0.77 11.42 -17.01 -0.19 0.58 16 15 N -0.30 -5.19 12.51 30.84 0.39 -4.81 16 16 N -0.37 -5.54 3.79 -55.39 -0.21 -5.75 16 17 C 0.09 1.04 5.25 -69.62 -0.37 0.68 16 18 C 0.01 0.14 8.11 -2.77 -0.02 0.12 16 19 N -0.66 -7.15 8.56 -117.16 -1.00 -8.15 16 20 C 0.01 0.11 8.70 -2.76 -0.02 0.09 16 21 C 0.00 0.07 9.11 -16.44 -0.15 -0.08 16 22 C -0.08 -1.93 9.50 -39.66 -0.38 -2.31 16 23 C -0.17 -4.21 8.63 -39.28 -0.34 -4.55 16 24 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 25 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 26 H 0.09 1.69 7.03 -52.48 -0.37 1.32 16 27 H 0.18 2.73 7.34 -52.49 -0.39 2.34 16 28 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.09 0.84 6.86 -51.93 -0.36 0.48 16 31 H 0.34 4.05 7.51 -39.29 -0.30 3.75 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.17 2.39 5.95 -52.48 -0.31 2.07 16 35 H 0.08 1.69 7.01 -52.49 -0.37 1.33 16 36 H 0.12 3.02 6.18 -52.49 -0.32 2.70 16 LS Contribution 303.11 15.07 4.57 4.57 Total: -1.00 -28.37 303.11 -9.26 -37.63 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -4.07 Total: 10.73 kcal Atomic # 6 Polarization: -23.62 SS G_CDS: -4.51 Total: -28.13 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: -0.22 Total: -37.81 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.01 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.37 -9.26 -37.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241603715.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.110 kcal (2) G-P(sol) polarization free energy of solvation -28.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds