Wall clock time and date at job start Mon Mar 30 2020 01:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30839 * 1 3 3 Si 1.86798 * 120.00122 * 2 1 4 4 H 1.48496 * 109.47126 * 274.65447 * 3 2 1 5 5 H 1.48498 * 109.47135 * 34.65446 * 3 2 1 6 6 H 1.48503 * 109.47303 * 154.65180 * 3 2 1 7 7 C 1.39944 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00064 * 162.11350 * 7 2 1 9 9 C 1.41028 * 119.99946 * 342.11406 * 7 2 1 10 10 C 1.40939 * 120.11740 * 155.00851 * 9 7 2 11 11 C 1.36227 * 119.87576 * 180.02562 * 10 9 7 12 12 C 1.39949 * 120.12306 * 0.02562 * 11 10 9 13 13 C 1.48000 * 119.88436 * 179.97438 * 12 11 10 14 14 C 1.41101 * 126.36321 * 0.02562 * 13 12 11 15 15 N 1.30552 * 108.11676 * 179.73731 * 14 13 12 16 16 N 1.39957 * 108.85018 * 0.38211 * 15 14 13 17 17 C 1.46498 * 125.81255 * 179.87581 * 16 15 14 18 18 C 1.53934 * 113.73576 * 167.96613 * 17 16 15 19 19 N 1.47954 * 86.18496 * 90.63489 * 18 17 16 20 20 C 1.47965 * 90.76110 * 24.69028 * 19 18 17 21 21 C 1.34695 * 108.37052 * 359.61187 * 16 15 14 22 22 C 1.39952 * 120.23695 * 0.26986 * 12 11 10 23 23 C 1.36238 * 120.11807 * 359.44498 * 22 12 11 24 24 H 0.96998 * 120.00028 * 359.97438 * 1 2 3 25 25 H 1.07996 * 120.05864 * 0.02562 * 10 9 7 26 26 H 1.08005 * 119.93776 * 180.02562 * 11 10 9 27 27 H 1.07999 * 125.94011 * 359.97438 * 14 13 12 28 28 H 1.09002 * 113.01164 * 36.32530 * 17 16 15 29 29 H 1.08992 * 113.76122 * 204.95567 * 18 17 16 30 30 H 1.09006 * 113.75605 * 336.31744 * 18 17 16 31 31 H 1.00899 * 111.00345 * 271.80004 * 19 18 17 32 32 H 1.09003 * 113.75825 * 220.98824 * 20 19 18 33 33 H 1.08996 * 113.75746 * 89.62890 * 20 19 18 34 34 H 1.08005 * 126.30377 * 180.22477 * 21 16 15 35 35 H 1.07998 * 119.93959 * 179.73264 * 22 12 11 36 36 H 1.07996 * 120.06189 * 180.25507 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3915 2.1032 -1.3954 5 1 1.4926 2.6222 0.7961 6 1 3.5857 1.4138 0.5994 7 6 2.0081 -1.2119 -0.0005 8 1 3.0489 -1.2344 -0.2878 9 6 1.3541 -2.4039 0.3740 10 6 1.8230 -3.6463 -0.0983 11 6 1.1871 -4.7946 0.2662 12 6 0.0700 -4.7422 1.1076 13 6 -0.6170 -5.9930 1.4998 14 6 -0.2622 -7.3010 1.1071 15 7 -1.1018 -8.1331 1.6613 16 7 -2.0270 -7.4050 2.4180 17 6 -3.1344 -7.9700 3.1930 18 6 -3.7994 -6.9628 4.1484 19 7 -4.7115 -6.6507 3.0260 20 6 -4.4749 -7.9870 2.4363 21 6 -1.7224 -6.0969 2.3170 22 6 -0.4035 -3.5108 1.5745 23 6 0.2284 -2.3568 1.2208 24 1 -0.4850 0.8400 0.0004 25 1 2.6847 -3.6878 -0.7479 26 1 1.5458 -5.7473 -0.0948 27 1 0.5630 -7.5677 0.4634 28 1 -2.8840 -8.9210 3.6630 29 1 -4.2949 -7.4273 5.0008 30 1 -3.1518 -6.1330 4.4318 31 1 -4.3285 -5.9240 2.4401 32 1 -4.3672 -7.9755 1.3517 33 1 -5.1681 -8.7511 2.7879 34 1 -2.2474 -5.2797 2.7894 35 1 -1.2685 -3.4756 2.2201 36 1 -0.1353 -1.4074 1.5850 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241603715.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:57 Heat of formation + Delta-G solvation = 115.722749 kcal Electronic energy + Delta-G solvation = -19247.008093 eV Core-core repulsion = 16311.779626 eV Total energy + Delta-G solvation = -2935.228467 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.42570 -40.12214 -39.14097 -35.67462 -33.07545 -32.33015 -31.21913 -30.15929 -27.94295 -27.16881 -26.37689 -23.61685 -23.19383 -22.21972 -21.00944 -20.31276 -19.22407 -18.26879 -17.23030 -16.83603 -16.59501 -15.95382 -15.74662 -15.40444 -15.22985 -14.74337 -14.69201 -14.28261 -13.99943 -13.71633 -13.52403 -13.32202 -13.03603 -12.77964 -12.55411 -12.41506 -12.29285 -12.14831 -11.80205 -11.36137 -11.19662 -11.06618 -10.42258 -10.17036 -9.70910 -9.40546 -8.70287 -8.48436 -6.23571 0.54761 1.03143 1.24018 1.39362 1.42092 1.44157 1.54459 2.10467 2.22396 2.73767 2.87148 3.15049 3.78624 3.79285 3.85028 3.96194 4.09823 4.44595 4.46670 4.51975 4.54177 4.61076 4.62622 4.71701 4.83149 4.86664 4.93938 5.08948 5.18398 5.40006 5.48205 5.61785 5.75567 5.94831 6.06377 6.13848 6.16988 6.28475 6.39742 6.70596 6.73674 6.94726 7.06743 8.32431 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.032202 B = 0.003973 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.293518 B = 7045.619276 C = 7723.299642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.036 3.964 3 Si 0.980 3.020 4 H -0.263 1.263 5 H -0.265 1.265 6 H -0.259 1.259 7 C -0.496 4.496 8 H 0.076 0.924 9 C 0.078 3.922 10 C -0.240 4.240 11 C -0.081 4.081 12 C -0.140 4.140 13 C -0.164 4.164 14 C 0.043 3.957 15 N -0.316 5.316 16 N -0.357 5.357 17 C 0.077 3.923 18 C 0.026 3.974 19 N -0.670 5.670 20 C 0.020 3.980 21 C 0.031 3.969 22 C -0.093 4.093 23 C -0.187 4.187 24 H 0.289 0.711 25 H 0.098 0.902 26 H 0.118 0.882 27 H 0.196 0.804 28 H 0.119 0.881 29 H 0.148 0.852 30 H 0.083 0.917 31 H 0.336 0.664 32 H 0.065 0.935 33 H 0.141 0.859 34 H 0.185 0.815 35 H 0.108 0.892 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.912 -10.207 6.812 14.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.179 4.179 3 Si 0.801 3.199 4 H -0.188 1.188 5 H -0.190 1.190 6 H -0.183 1.183 7 C -0.525 4.525 8 H 0.094 0.906 9 C 0.076 3.924 10 C -0.259 4.259 11 C -0.099 4.099 12 C -0.142 4.142 13 C -0.175 4.175 14 C -0.143 4.143 15 N -0.137 5.137 16 N -0.140 5.140 17 C -0.027 4.027 18 C -0.105 4.105 19 N -0.297 5.297 20 C -0.111 4.111 21 C -0.115 4.115 22 C -0.112 4.112 23 C -0.207 4.207 24 H 0.100 0.900 25 H 0.116 0.884 26 H 0.136 0.864 27 H 0.213 0.787 28 H 0.137 0.863 29 H 0.165 0.835 30 H 0.101 0.899 31 H 0.151 0.849 32 H 0.083 0.917 33 H 0.159 0.841 34 H 0.202 0.798 35 H 0.126 0.874 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.377 -11.335 7.319 15.882 hybrid contribution 1.694 1.761 -0.826 2.579 sum -6.683 -9.575 6.494 13.360 Atomic orbital electron populations 1.69883 1.09014 1.30628 1.35152 1.26753 0.95464 1.04478 0.91201 0.85220 0.79246 0.76046 0.79386 1.18764 1.18951 1.18277 1.19829 0.98447 0.92685 1.41560 0.90612 1.18016 0.91990 0.93079 0.89318 1.20864 1.04623 0.93180 1.07259 1.20561 0.95070 0.97186 0.97082 1.17712 0.99640 0.90283 1.06583 1.19341 0.99603 0.93290 1.05275 1.24198 0.99387 0.90561 1.00105 1.76968 1.03498 1.20928 1.12345 1.48171 1.23568 1.03809 1.38411 1.24275 0.84866 1.00582 0.92945 1.24238 0.92881 0.97329 0.96046 1.65106 1.50753 1.05118 1.08742 1.24188 0.93439 0.93989 0.99464 1.22802 0.98962 0.87654 1.02054 1.20613 0.98762 0.92110 0.99716 1.20932 1.00335 0.97139 1.02272 0.90049 0.88369 0.86370 0.78682 0.86285 0.83466 0.89868 0.84905 0.91682 0.84109 0.79845 0.87447 0.88110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.62 10.97 21.83 0.24 -42.38 16 2 C 0.04 1.82 5.13 85.25 0.44 2.26 16 3 Si 0.98 37.79 29.60 68.60 2.03 39.82 16 4 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 5 H -0.27 -9.69 7.11 99.48 0.71 -8.99 16 6 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 7 C -0.50 -26.75 9.03 23.37 0.21 -26.54 16 8 H 0.08 3.94 7.91 -2.91 -0.02 3.92 16 9 C 0.08 4.24 5.57 -21.27 -0.12 4.12 16 10 C -0.24 -11.79 9.73 22.46 0.22 -11.58 16 11 C -0.08 -3.53 9.51 22.22 0.21 -3.32 16 12 C -0.14 -6.03 5.90 -19.86 -0.12 -6.14 16 13 C -0.16 -5.97 6.08 -20.08 -0.12 -6.09 16 14 C 0.04 1.41 11.42 85.59 0.98 2.39 16 15 N -0.32 -10.13 12.51 -56.35 -0.70 -10.84 16 16 N -0.36 -9.82 3.79 -329.16 -1.25 -11.07 16 17 C 0.08 1.44 5.25 46.56 0.24 1.69 16 18 C 0.03 0.39 8.11 86.41 0.70 1.09 16 19 N -0.67 -12.50 8.56 -524.57 -4.49 -16.99 16 20 C 0.02 0.34 8.70 86.41 0.75 1.09 16 21 C 0.03 0.93 9.11 84.16 0.77 1.70 16 22 C -0.09 -4.26 9.50 22.22 0.21 -4.05 16 23 C -0.19 -9.79 8.63 22.47 0.19 -9.59 16 24 H 0.29 13.48 8.30 -92.71 -0.77 12.71 16 25 H 0.10 4.56 8.06 -2.91 -0.02 4.53 16 26 H 0.12 4.36 7.03 -2.91 -0.02 4.34 16 27 H 0.20 5.55 7.34 -2.91 -0.02 5.53 16 28 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.15 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.08 1.34 6.86 -2.38 -0.02 1.32 16 31 H 0.34 7.12 7.51 -89.69 -0.67 6.44 16 32 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.14 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.18 4.82 5.95 -2.91 -0.02 4.80 16 35 H 0.11 4.24 7.01 -2.91 -0.02 4.22 16 36 H 0.10 5.48 6.18 -2.91 -0.02 5.47 16 Total: -1.00 -62.93 303.11 0.83 -62.09 By element: Atomic # 1 Polarization: 31.91 SS G_CDS: 0.44 Total: 32.35 kcal Atomic # 6 Polarization: -57.55 SS G_CDS: 4.57 Total: -52.98 kcal Atomic # 7 Polarization: -75.07 SS G_CDS: -6.20 Total: -81.28 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 2.03 Total: 39.82 kcal Total: -62.93 0.83 -62.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241603715.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.817 kcal (2) G-P(sol) polarization free energy of solvation -62.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds