Wall clock time and date at job start Mon Mar 30 2020 01:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32140 * 120.47210 * 2 1 4 4 C 1.32520 * 120.86367 * 180.02562 * 3 2 1 5 5 N 1.38355 * 119.07177 * 179.97438 * 4 3 2 6 6 N 1.32548 * 121.85315 * 359.97438 * 4 3 2 7 7 C 1.32110 * 120.86126 * 359.74362 * 6 4 3 8 8 C 1.39694 * 120.47697 * 180.02562 * 2 1 3 9 9 C 1.48375 * 120.84200 * 359.97438 * 8 2 1 10 10 C 1.39375 * 120.11787 * 309.99771 * 9 8 2 11 11 C 1.37992 * 119.87547 * 179.72604 * 10 9 8 12 12 C 1.38342 * 120.12206 * 359.97438 * 11 10 9 13 13 C 1.38298 * 120.24919 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.94211 * 179.97438 * 13 12 11 15 15 C 1.50690 * 109.47069 * 90.00381 * 14 13 12 16 16 H 1.07996 * 120.00510 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99962 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00052 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00145 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46885 * 89.99932 * 19 17 15 21 21 H 1.48500 * 109.47490 * 210.00127 * 19 17 15 22 22 H 1.48504 * 109.47232 * 330.00299 * 19 17 15 23 23 C 1.38041 * 120.12218 * 0.02562 * 13 12 11 24 24 H 1.09006 * 109.47335 * 269.97210 * 1 2 3 25 25 H 1.09003 * 109.47393 * 29.97861 * 1 2 3 26 26 H 1.09004 * 109.47253 * 149.97849 * 1 2 3 27 27 H 0.97000 * 119.99852 * 0.02562 * 5 4 3 28 28 H 0.96996 * 119.99681 * 179.97438 * 5 4 3 29 29 H 1.08008 * 120.47615 * 180.28388 * 7 6 4 30 30 H 1.08000 * 120.05709 * 359.69792 * 10 9 8 31 31 H 1.08003 * 119.93667 * 179.97438 * 11 10 9 32 32 H 1.08002 * 119.87689 * 180.02562 * 12 11 10 33 33 H 1.09001 * 109.46872 * 210.00596 * 14 13 12 34 34 H 1.08997 * 109.46951 * 329.99998 * 14 13 12 35 35 H 0.96998 * 119.99986 * 180.02562 * 18 17 15 36 36 H 1.07995 * 120.06393 * 180.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1771 1.1389 0.0000 4 6 3.5023 1.1479 -0.0005 5 7 4.1663 2.3617 -0.0010 6 7 4.2095 0.0269 -0.0005 7 6 3.6119 -1.1513 0.0050 8 6 2.2155 -1.2039 -0.0005 9 6 1.5034 -2.5056 -0.0006 10 6 0.4883 -2.7475 0.9234 11 6 -0.1745 -3.9578 0.9152 12 6 0.1666 -4.9299 -0.0081 13 6 1.1730 -4.6954 -0.9272 14 6 1.5393 -5.7595 -1.9295 15 6 0.7072 -5.5853 -3.1737 16 1 -0.0150 -4.7845 -3.2326 17 6 0.8671 -6.4490 -4.2364 18 7 1.7461 -7.4245 -4.1645 19 14 -0.1650 -6.2336 -5.7785 20 1 0.5413 -5.3333 -6.7250 21 1 -0.3792 -7.5559 -6.4195 22 1 -1.4774 -5.6403 -5.4170 23 6 1.8435 -3.4887 -0.9274 24 1 -0.3634 -0.0005 1.0277 25 1 -0.3634 0.8902 -0.5135 26 1 -0.3634 -0.8898 -0.5142 27 1 3.6620 3.1904 -0.0006 28 1 5.1360 2.3840 -0.0010 29 1 4.1943 -2.0609 0.0096 30 1 0.2213 -1.9892 1.6446 31 1 -0.9610 -4.1464 1.6310 32 1 -0.3551 -5.8756 -0.0112 33 1 2.5956 -5.6711 -2.1835 34 1 1.3499 -6.7433 -1.5004 35 1 1.8589 -8.0319 -4.9123 36 1 2.6290 -3.3064 -1.6458 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241644813.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:31 Heat of formation + Delta-G solvation = 59.466589 kcal Electronic energy + Delta-G solvation = -19203.490247 eV Core-core repulsion = 16265.822330 eV Total energy + Delta-G solvation = -2937.667917 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.98138 -38.62508 -35.44765 -34.11109 -33.50221 -32.05480 -31.06457 -29.50539 -27.75703 -26.99358 -23.93150 -23.30787 -22.63682 -21.33556 -20.04180 -18.12059 -17.36150 -16.41589 -16.10392 -15.67707 -15.26837 -15.11591 -14.47728 -14.31658 -14.16688 -13.23683 -13.20665 -13.11105 -12.62699 -12.41877 -12.28394 -11.71110 -11.47207 -11.29557 -11.05266 -10.93075 -10.71740 -10.52113 -10.35139 -10.24973 -9.58923 -9.48139 -9.17389 -8.61902 -8.44362 -7.97826 -7.63842 -6.06393 -4.10227 1.03508 1.20514 2.03537 2.10094 3.09079 3.29378 3.35813 3.39617 3.90834 4.16146 4.33777 4.50376 4.63458 4.82873 5.05401 5.24147 5.28884 5.46822 5.50575 5.57218 5.62516 5.83032 5.92228 6.01497 6.07954 6.26522 6.33812 6.52526 6.70322 6.90525 7.00906 7.10874 7.14618 7.16712 7.34139 7.47616 7.66587 7.81029 7.89508 8.29227 8.37766 8.95023 9.53883 11.03541 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.020772 B = 0.004493 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.636982 B = 6229.792688 C = 6674.487188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.228 3.772 3 N -0.572 5.572 4 C 0.557 3.443 5 N -0.826 5.826 6 N -0.573 5.573 7 C 0.204 3.796 8 C -0.194 4.194 9 C -0.042 4.042 10 C -0.135 4.135 11 C -0.121 4.121 12 C -0.119 4.119 13 C -0.031 4.031 14 C 0.047 3.953 15 C -0.512 4.512 16 H 0.057 0.943 17 C 0.059 3.941 18 N -0.894 5.894 19 Si 0.894 3.106 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.108 4.108 24 H 0.084 0.916 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.412 0.588 28 H 0.412 0.588 29 H 0.171 0.829 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.029 0.971 34 H 0.030 0.970 35 H 0.262 0.738 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.587 14.691 10.479 18.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.080 3.920 3 N -0.296 5.296 4 C 0.199 3.801 5 N -0.375 5.375 6 N -0.296 5.296 7 C 0.037 3.963 8 C -0.201 4.201 9 C -0.043 4.043 10 C -0.153 4.153 11 C -0.139 4.139 12 C -0.137 4.137 13 C -0.031 4.031 14 C 0.010 3.990 15 C -0.550 4.550 16 H 0.075 0.925 17 C -0.142 4.142 18 N -0.533 5.533 19 Si 0.722 3.278 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.126 4.126 24 H 0.102 0.898 25 H 0.096 0.904 26 H 0.109 0.891 27 H 0.242 0.758 28 H 0.243 0.757 29 H 0.188 0.812 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.136 0.864 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.072 0.928 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.144 15.428 10.372 18.626 hybrid contribution -0.676 -0.384 -0.966 1.240 sum 0.468 15.045 9.406 17.749 Atomic orbital electron populations 1.20894 0.87841 1.04338 1.03442 1.21473 0.96910 0.86370 0.87239 1.67636 1.07478 1.30962 1.23498 1.19317 0.85314 0.86881 0.88584 1.41645 1.09588 1.03581 1.82684 1.67847 1.40705 0.98036 1.22971 1.23118 0.91221 0.94711 0.87276 1.20119 0.94994 0.94514 1.10469 1.18248 0.97046 0.91548 0.97464 1.20892 0.97451 0.97455 0.99475 1.20953 0.99888 0.93833 0.99270 1.21172 0.97808 0.99336 0.95397 1.20623 0.92636 0.95670 0.94135 1.18371 0.97459 0.91583 0.91581 1.21048 1.21211 1.13920 0.98871 0.92457 1.25000 0.95468 0.95113 0.98665 1.69950 1.34554 1.16924 1.31827 0.86553 0.80730 0.77446 0.83097 1.20602 1.21139 1.19772 1.21113 1.00808 0.92864 0.97836 0.89774 0.90399 0.89112 0.75791 0.75695 0.81230 0.87119 0.86844 0.86373 0.95292 0.95215 0.92818 0.86417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 8.70 36.01 0.31 -0.95 16 2 C 0.23 3.26 6.82 -81.92 -0.56 2.71 16 3 N -0.57 -8.28 10.38 -9.91 -0.10 -8.38 16 4 C 0.56 7.73 8.66 -322.78 -2.80 4.94 16 5 N -0.83 -7.91 9.06 29.77 0.27 -7.64 16 6 N -0.57 -8.42 10.44 -13.67 -0.14 -8.57 16 7 C 0.20 2.97 10.85 -16.87 -0.18 2.79 16 8 C -0.19 -2.91 5.49 -104.62 -0.57 -3.49 16 9 C -0.04 -0.67 4.80 -104.90 -0.50 -1.17 16 10 C -0.13 -1.98 8.00 -39.25 -0.31 -2.29 16 11 C -0.12 -1.86 10.03 -39.63 -0.40 -2.26 16 12 C -0.12 -2.19 9.69 -39.52 -0.38 -2.57 16 13 C -0.03 -0.64 5.06 -104.67 -0.53 -1.17 16 14 C 0.05 1.17 5.10 -29.04 -0.15 1.02 16 15 C -0.51 -14.09 9.09 -34.44 -0.31 -14.41 16 16 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -26.09 13.29 55.43 0.74 -25.36 16 19 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 C -0.11 -2.02 9.21 -39.25 -0.36 -2.39 16 24 H 0.08 0.83 7.60 -51.93 -0.39 0.43 16 25 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.09 1.14 6.57 -51.93 -0.34 0.80 16 27 H 0.41 3.11 8.94 -40.82 -0.36 2.74 16 28 H 0.41 3.16 8.94 -40.82 -0.37 2.80 16 29 H 0.17 2.17 8.06 -52.48 -0.42 1.75 16 30 H 0.11 1.37 6.98 -52.49 -0.37 1.01 16 31 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 32 H 0.12 2.12 8.06 -52.49 -0.42 1.70 16 33 H 0.03 0.76 8.08 -51.93 -0.42 0.34 16 34 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 312.63 15.07 4.71 4.71 Total: -1.00 -31.26 312.63 -10.72 -41.98 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -4.33 Total: 4.60 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: -6.85 Total: -17.68 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: 0.76 Total: -49.95 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.26 -10.72 -41.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241644813.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.445 kcal (2) G-P(sol) polarization free energy of solvation -31.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds