Wall clock time and date at job start Mon Mar 30 2020 01:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32140 * 120.47210 * 2 1 4 4 C 1.32520 * 120.86367 * 180.02562 * 3 2 1 5 5 N 1.38355 * 119.07177 * 179.97438 * 4 3 2 6 6 N 1.32548 * 121.85315 * 359.97438 * 4 3 2 7 7 C 1.32110 * 120.86126 * 359.74362 * 6 4 3 8 8 C 1.39694 * 120.47697 * 180.02562 * 2 1 3 9 9 C 1.48375 * 120.84200 * 359.97438 * 8 2 1 10 10 C 1.39375 * 120.11787 * 309.99771 * 9 8 2 11 11 C 1.37992 * 119.87547 * 179.72604 * 10 9 8 12 12 C 1.38342 * 120.12206 * 359.97438 * 11 10 9 13 13 C 1.38298 * 120.24919 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.94211 * 179.97438 * 13 12 11 15 15 C 1.50690 * 109.47069 * 90.00381 * 14 13 12 16 16 H 1.07996 * 120.00510 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99962 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00052 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00145 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46885 * 89.99932 * 19 17 15 21 21 H 1.48500 * 109.47490 * 210.00127 * 19 17 15 22 22 H 1.48504 * 109.47232 * 330.00299 * 19 17 15 23 23 C 1.38041 * 120.12218 * 0.02562 * 13 12 11 24 24 H 1.09006 * 109.47335 * 269.97210 * 1 2 3 25 25 H 1.09003 * 109.47393 * 29.97861 * 1 2 3 26 26 H 1.09004 * 109.47253 * 149.97849 * 1 2 3 27 27 H 0.97000 * 119.99852 * 0.02562 * 5 4 3 28 28 H 0.96996 * 119.99681 * 179.97438 * 5 4 3 29 29 H 1.08008 * 120.47615 * 180.28388 * 7 6 4 30 30 H 1.08000 * 120.05709 * 359.69792 * 10 9 8 31 31 H 1.08003 * 119.93667 * 179.97438 * 11 10 9 32 32 H 1.08002 * 119.87689 * 180.02562 * 12 11 10 33 33 H 1.09001 * 109.46872 * 210.00596 * 14 13 12 34 34 H 1.08997 * 109.46951 * 329.99998 * 14 13 12 35 35 H 0.96998 * 119.99986 * 180.02562 * 18 17 15 36 36 H 1.07995 * 120.06393 * 180.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1771 1.1389 0.0000 4 6 3.5023 1.1479 -0.0005 5 7 4.1663 2.3617 -0.0010 6 7 4.2095 0.0269 -0.0005 7 6 3.6119 -1.1513 0.0050 8 6 2.2155 -1.2039 -0.0005 9 6 1.5034 -2.5056 -0.0006 10 6 0.4883 -2.7475 0.9234 11 6 -0.1745 -3.9578 0.9152 12 6 0.1666 -4.9299 -0.0081 13 6 1.1730 -4.6954 -0.9272 14 6 1.5393 -5.7595 -1.9295 15 6 0.7072 -5.5853 -3.1737 16 1 -0.0150 -4.7845 -3.2326 17 6 0.8671 -6.4490 -4.2364 18 7 1.7461 -7.4245 -4.1645 19 14 -0.1650 -6.2336 -5.7785 20 1 0.5413 -5.3333 -6.7250 21 1 -0.3792 -7.5559 -6.4195 22 1 -1.4774 -5.6403 -5.4170 23 6 1.8435 -3.4887 -0.9274 24 1 -0.3634 -0.0005 1.0277 25 1 -0.3634 0.8902 -0.5135 26 1 -0.3634 -0.8898 -0.5142 27 1 3.6620 3.1904 -0.0006 28 1 5.1360 2.3840 -0.0010 29 1 4.1943 -2.0609 0.0096 30 1 0.2213 -1.9892 1.6446 31 1 -0.9610 -4.1464 1.6310 32 1 -0.3551 -5.8756 -0.0112 33 1 2.5956 -5.6711 -2.1835 34 1 1.3499 -6.7433 -1.5004 35 1 1.8589 -8.0319 -4.9123 36 1 2.6290 -3.3064 -1.6458 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241644813.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:30 Heat of formation + Delta-G solvation = 42.298549 kcal Electronic energy + Delta-G solvation = -19204.234709 eV Core-core repulsion = 16265.822330 eV Total energy + Delta-G solvation = -2938.412379 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.05809 -39.97411 -36.53366 -35.35885 -35.16194 -33.44846 -32.57084 -30.62795 -28.90421 -28.76191 -25.23831 -25.03724 -23.69944 -22.64004 -21.49704 -19.14159 -18.50535 -18.32314 -17.51800 -16.64471 -16.56939 -16.35516 -16.23491 -15.68179 -15.22059 -14.55753 -14.50972 -14.23691 -14.10693 -13.90972 -13.49487 -13.27338 -12.97185 -12.77621 -12.70588 -12.55124 -12.28005 -11.96391 -11.64002 -11.52645 -11.42900 -11.21726 -10.60098 -10.30394 -9.77457 -9.42073 -8.83868 -8.19635 -6.32502 -0.10910 0.12133 0.69737 0.77783 1.39944 1.40406 1.51935 2.18366 2.39916 2.80568 3.04981 3.11445 3.15875 3.59476 3.70558 4.02104 4.10881 4.25673 4.33127 4.43874 4.62301 4.70644 4.74184 4.78134 4.95266 5.01271 5.12468 5.27415 5.38370 5.38612 5.42587 5.69368 5.70540 5.79118 5.90603 6.12447 6.14353 6.28212 6.35573 6.37841 6.80543 7.36071 7.39849 8.89695 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.020772 B = 0.004493 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.636982 B = 6229.792688 C = 6674.487188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.228 3.772 3 N -0.581 5.581 4 C 0.548 3.452 5 N -0.806 5.806 6 N -0.588 5.588 7 C 0.199 3.801 8 C -0.213 4.213 9 C -0.028 4.028 10 C -0.119 4.119 11 C -0.107 4.107 12 C -0.133 4.133 13 C -0.061 4.061 14 C 0.055 3.945 15 C -0.527 4.527 16 H 0.055 0.945 17 C 0.005 3.995 18 N -0.930 5.930 19 Si 0.962 3.038 20 H -0.274 1.274 21 H -0.279 1.279 22 H -0.264 1.264 23 C -0.122 4.122 24 H 0.110 0.890 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.423 0.577 28 H 0.422 0.578 29 H 0.177 0.823 30 H 0.147 0.853 31 H 0.153 0.847 32 H 0.114 0.886 33 H 0.000 1.000 34 H 0.005 0.995 35 H 0.265 0.735 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.964 17.075 11.554 20.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.080 3.920 3 N -0.305 5.305 4 C 0.189 3.811 5 N -0.356 5.356 6 N -0.311 5.311 7 C 0.032 3.968 8 C -0.221 4.221 9 C -0.029 4.029 10 C -0.137 4.137 11 C -0.124 4.124 12 C -0.151 4.151 13 C -0.061 4.061 14 C 0.019 3.981 15 C -0.565 4.565 16 H 0.073 0.927 17 C -0.193 4.193 18 N -0.570 5.570 19 Si 0.787 3.213 20 H -0.200 1.200 21 H -0.204 1.204 22 H -0.188 1.188 23 C -0.140 4.140 24 H 0.128 0.872 25 H 0.106 0.894 26 H 0.100 0.900 27 H 0.256 0.744 28 H 0.255 0.745 29 H 0.194 0.806 30 H 0.164 0.836 31 H 0.170 0.830 32 H 0.132 0.868 33 H 0.019 0.981 34 H 0.023 0.977 35 H 0.074 0.926 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.386 17.858 11.456 21.221 hybrid contribution -0.124 -0.996 -1.220 1.579 sum -0.510 16.863 10.237 19.733 Atomic orbital electron populations 1.20971 0.85927 1.04378 1.05044 1.21890 0.98185 0.85976 0.85972 1.67752 1.07627 1.30831 1.24324 1.19738 0.85602 0.87770 0.88009 1.41671 1.10247 1.02805 1.80886 1.67903 1.40908 0.98310 1.24024 1.23310 0.91519 0.95196 0.86761 1.20055 0.95136 0.94299 1.12628 1.18276 0.97029 0.91144 0.96500 1.21291 0.95801 0.97807 0.98791 1.21286 1.00038 0.92765 0.98360 1.21212 0.97494 1.00371 0.96039 1.20263 0.95267 0.95497 0.95031 1.18105 0.95490 0.92167 0.92384 1.21387 1.21310 1.13728 1.00085 0.92707 1.25899 0.96643 0.94720 1.02032 1.70074 1.36137 1.17852 1.32958 0.85487 0.79259 0.77657 0.78929 1.20008 1.20439 1.18799 1.20985 1.00910 0.93218 0.98896 0.87204 0.89434 0.89963 0.74445 0.74520 0.80589 0.83550 0.82979 0.86810 0.98126 0.97679 0.92612 0.87906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.13 8.70 71.24 0.62 -1.51 16 2 C 0.23 6.00 6.82 42.86 0.29 6.30 16 3 N -0.58 -15.51 10.38 -185.28 -1.92 -17.43 16 4 C 0.55 14.20 8.66 261.48 2.27 16.47 16 5 N -0.81 -13.68 9.06 -59.74 -0.54 -14.22 16 6 N -0.59 -16.67 10.44 -197.17 -2.06 -18.73 16 7 C 0.20 5.70 10.85 85.01 0.92 6.62 16 8 C -0.21 -6.14 5.49 -19.86 -0.11 -6.25 16 9 C -0.03 -0.87 4.80 -20.04 -0.10 -0.97 16 10 C -0.12 -3.11 8.00 22.49 0.18 -2.93 16 11 C -0.11 -2.96 10.03 22.24 0.22 -2.73 16 12 C -0.13 -4.87 9.69 22.31 0.22 -4.65 16 13 C -0.06 -2.61 5.06 -19.90 -0.10 -2.71 16 14 C 0.06 2.96 5.10 29.10 0.15 3.11 16 15 C -0.53 -30.10 9.09 25.60 0.23 -29.87 16 16 H 0.05 3.08 7.74 -2.91 -0.02 3.06 16 17 C 0.01 0.30 5.46 84.66 0.46 0.76 16 18 N -0.93 -56.20 13.29 21.45 0.28 -55.91 16 19 Si 0.96 44.37 29.54 68.60 2.03 46.40 16 20 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 22 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 23 C -0.12 -4.69 9.21 22.49 0.21 -4.48 16 24 H 0.11 1.65 7.60 -2.38 -0.02 1.63 16 25 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.08 1.82 6.57 -2.38 -0.02 1.81 16 27 H 0.42 5.32 8.94 -92.71 -0.83 4.49 16 28 H 0.42 5.58 8.94 -92.71 -0.83 4.75 16 29 H 0.18 4.58 8.06 -2.91 -0.02 4.56 16 30 H 0.15 2.85 6.98 -2.91 -0.02 2.83 16 31 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 32 H 0.11 4.15 8.06 -2.91 -0.02 4.13 16 33 H 0.00 0.02 8.08 -2.39 -0.02 0.00 16 34 H 0.00 0.28 8.08 -2.39 -0.02 0.26 16 35 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 36 H 0.10 4.14 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -69.33 312.63 2.71 -66.61 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -0.54 Total: 16.14 kcal Atomic # 6 Polarization: -28.32 SS G_CDS: 5.46 Total: -22.85 kcal Atomic # 7 Polarization: -102.06 SS G_CDS: -4.24 Total: -106.29 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -69.33 2.71 -66.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241644813.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.912 kcal (2) G-P(sol) polarization free energy of solvation -69.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds