Wall clock time and date at job start Mon Mar 30 2020 01:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36231 * 119.94202 * 2 1 4 4 C 1.40935 * 119.88157 * 180.25358 * 3 2 1 5 5 C 1.40997 * 120.11448 * 179.76365 * 4 3 2 6 6 H 1.08004 * 119.99698 * 327.11949 * 5 4 3 7 7 C 1.39975 * 120.00173 * 147.12393 * 5 4 3 8 8 N 1.30821 * 119.99908 * 169.66223 * 7 5 4 9 9 Si 1.86796 * 119.99955 * 349.67037 * 7 5 4 10 10 H 1.48501 * 109.47518 * 89.55395 * 9 7 5 11 11 H 1.48505 * 109.47171 * 209.55298 * 9 7 5 12 12 H 1.48499 * 109.47100 * 329.55113 * 9 7 5 13 13 C 1.40966 * 119.77314 * 359.73723 * 4 3 2 14 14 C 1.36206 * 119.88153 * 359.97438 * 13 4 3 15 15 C 1.39967 * 119.93859 * 179.73551 * 2 1 3 16 16 C 1.47896 * 119.88986 * 0.02562 * 15 2 1 17 17 C 1.40058 * 120.86929 * 110.28647 * 16 15 2 18 18 N 1.32022 * 119.01172 * 180.02562 * 17 16 15 19 19 C 1.32615 * 120.89714 * 359.97438 * 18 17 16 20 20 N 1.38203 * 119.04602 * 180.02562 * 19 18 17 21 21 N 1.32597 * 121.91742 * 0.02961 * 19 18 17 22 22 C 1.32048 * 120.89615 * 359.96741 * 21 19 18 23 23 C 1.50699 * 120.49480 * 179.72426 * 22 21 19 24 24 H 1.09006 * 109.47433 * 266.88168 * 1 2 3 25 25 H 1.08999 * 109.47204 * 26.88025 * 1 2 3 26 26 H 1.08995 * 109.47609 * 146.87999 * 1 2 3 27 27 H 1.08006 * 120.06438 * 0.02562 * 3 2 1 28 28 H 0.96996 * 120.00028 * 179.97438 * 8 7 5 29 29 H 1.07999 * 120.06263 * 179.97438 * 13 4 3 30 30 H 1.07993 * 119.94228 * 179.97438 * 14 13 4 31 31 H 1.07999 * 120.49323 * 0.04700 * 17 16 15 32 32 H 0.97006 * 120.00278 * 180.02562 * 20 19 18 33 33 H 0.96997 * 120.00297 * 0.02796 * 20 19 18 34 34 H 1.08998 * 109.47009 * 88.99532 * 23 22 21 35 35 H 1.09004 * 109.47054 * 208.99094 * 23 22 21 36 36 H 1.08995 * 109.47011 * 328.99657 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1869 1.1805 0.0000 4 6 3.5963 1.1790 -0.0054 5 6 4.3050 2.3979 -0.0105 6 1 3.8953 3.2586 -0.5184 7 6 5.5394 2.4925 0.6426 8 7 6.2903 3.5501 0.4719 9 14 6.1145 1.1087 1.7577 10 1 6.8818 0.1176 0.9613 11 1 6.9829 1.6632 2.8272 12 1 4.9362 0.4451 2.3712 13 6 4.2950 -0.0453 -0.0052 14 6 3.6056 -1.2200 0.0008 15 6 2.2055 -1.2129 0.0056 16 6 1.4622 -2.4915 0.0109 17 6 1.4618 -3.3272 -1.1130 18 7 0.7854 -4.4600 -1.0683 19 6 0.1139 -4.8097 0.0205 20 7 -0.5808 -6.0045 0.0256 21 7 0.0894 -4.0464 1.1044 22 6 0.7404 -2.8981 1.1399 23 6 0.7014 -2.0347 2.3744 24 1 -0.3634 -0.0559 1.0262 25 1 -0.3633 0.9166 -0.4646 26 1 -0.3634 -0.8606 -0.5615 27 1 1.6470 2.1159 0.0004 28 1 7.1456 3.6158 0.9248 29 1 5.3749 -0.0519 -0.0097 30 1 4.1399 -2.1585 0.0005 31 1 2.0070 -3.0491 -2.0029 32 1 -1.0770 -6.2737 0.8145 33 1 -0.5722 -6.5739 -0.7596 34 1 1.5126 -2.3211 3.0438 35 1 0.8171 -0.9888 2.0901 36 1 -0.2535 -2.1698 2.8822 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241646318.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:42 Heat of formation + Delta-G solvation = 58.737100 kcal Electronic energy + Delta-G solvation = -19816.442059 eV Core-core repulsion = 16878.742508 eV Total energy + Delta-G solvation = -2937.699550 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.68439 -38.21664 -35.24630 -33.84677 -33.81412 -32.04207 -31.25691 -29.48115 -28.04314 -26.29573 -25.01775 -23.02207 -22.16389 -20.80800 -20.18442 -17.91977 -17.16078 -17.06133 -16.12729 -15.48490 -15.13461 -14.92237 -14.09583 -13.92270 -13.62257 -13.53272 -12.90413 -12.83855 -12.61178 -12.47576 -12.27283 -11.88498 -11.72217 -11.43011 -10.91958 -10.80751 -10.72921 -10.43811 -10.25989 -10.09115 -9.80152 -9.68891 -9.19898 -8.89226 -7.97760 -7.72926 -7.36315 -6.99304 -4.56134 1.45368 1.48958 2.45425 2.62599 3.06943 3.18607 3.26733 3.31329 3.92496 4.16449 4.37144 4.46012 4.93429 5.13750 5.25406 5.57844 5.63671 5.77595 5.79291 5.83176 5.88931 6.06926 6.10291 6.19312 6.32893 6.43612 6.47544 6.65505 6.74484 6.85144 7.07367 7.15544 7.35184 7.37049 7.48439 7.65878 7.71021 7.80972 8.02620 8.27541 8.57366 8.62198 8.71818 10.02548 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.031720 B = 0.005117 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.505797 B = 5470.480531 C = 5669.634732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.032 4.032 3 C -0.204 4.204 4 C 0.101 3.899 5 C -0.440 4.440 6 H 0.092 0.908 7 C 0.081 3.919 8 N -0.811 5.811 9 Si 0.917 3.083 10 H -0.270 1.270 11 H -0.294 1.294 12 H -0.243 1.243 13 C -0.243 4.243 14 C -0.052 4.052 15 C -0.180 4.180 16 C -0.150 4.150 17 C 0.185 3.815 18 N -0.576 5.576 19 C 0.546 3.454 20 N -0.831 5.831 21 N -0.574 5.574 22 C 0.217 3.783 23 C -0.109 4.109 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.102 0.898 28 H 0.286 0.714 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.165 0.835 32 H 0.409 0.591 33 H 0.410 0.590 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.643 -11.484 1.586 14.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.033 4.033 3 C -0.224 4.224 4 C 0.098 3.902 5 C -0.469 4.469 6 H 0.110 0.890 7 C -0.138 4.138 8 N -0.435 5.435 9 Si 0.745 3.255 10 H -0.196 1.196 11 H -0.221 1.221 12 H -0.166 1.166 13 C -0.262 4.262 14 C -0.070 4.070 15 C -0.182 4.182 16 C -0.157 4.157 17 C 0.019 3.981 18 N -0.299 5.299 19 C 0.187 3.813 20 N -0.381 5.381 21 N -0.297 5.297 22 C 0.070 3.930 23 C -0.167 4.167 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.120 0.880 28 H 0.097 0.903 29 H 0.120 0.880 30 H 0.110 0.890 31 H 0.182 0.818 32 H 0.239 0.761 33 H 0.240 0.760 34 H 0.098 0.902 35 H 0.114 0.886 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.918 -12.115 1.613 15.130 hybrid contribution 0.807 -0.108 0.342 0.883 sum -8.111 -12.223 1.956 14.799 Atomic orbital electron populations 1.20823 0.93518 1.01233 1.01136 1.19147 0.93648 0.92553 0.97905 1.20604 0.93826 0.95713 1.12221 1.17783 0.91951 0.92579 0.87929 1.19516 1.01154 0.97472 1.28737 0.89034 1.26201 0.94878 0.96651 0.96033 1.69639 1.10195 1.28302 1.35327 0.86261 0.79744 0.80255 0.79288 1.19641 1.22134 1.16628 1.20768 0.98375 0.92884 1.14150 1.20325 0.92622 0.96557 0.97542 1.17462 0.91790 0.89079 1.19879 1.20102 1.02623 0.98156 0.94825 1.23215 0.90943 0.86760 0.97188 1.67763 1.14413 1.20324 1.27415 1.19249 0.88755 0.87673 0.85584 1.41540 1.56294 1.19688 1.20537 1.67569 1.26628 1.07740 1.27808 1.21646 0.87832 0.88809 0.94757 1.20901 1.02727 0.99616 0.93412 0.92032 0.92401 0.93080 0.87969 0.90322 0.88005 0.88951 0.81800 0.76061 0.76017 0.90188 0.88636 0.90947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.78 8.70 36.00 0.31 -1.46 16 2 C -0.03 -0.62 4.81 -104.70 -0.50 -1.13 16 3 C -0.20 -4.44 9.35 -39.28 -0.37 -4.81 16 4 C 0.10 2.42 5.12 -106.80 -0.55 1.87 16 5 C -0.44 -11.45 9.58 -37.89 -0.36 -11.81 16 6 H 0.09 2.50 8.06 -52.48 -0.42 2.07 16 7 C 0.08 2.06 5.48 -17.33 -0.09 1.97 16 8 N -0.81 -21.10 13.93 55.55 0.77 -20.33 16 9 Si 0.92 20.33 24.40 -169.99 -4.15 16.18 16 10 H -0.27 -5.83 6.56 56.52 0.37 -5.46 16 11 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.24 -5.46 6.77 56.52 0.38 -5.08 16 13 C -0.24 -5.55 6.95 -39.28 -0.27 -5.82 16 14 C -0.05 -1.07 9.71 -39.65 -0.38 -1.45 16 15 C -0.18 -3.46 4.58 -104.63 -0.48 -3.94 16 16 C -0.15 -2.60 4.00 -104.59 -0.42 -3.02 16 17 C 0.18 3.04 11.09 -16.79 -0.19 2.85 16 18 N -0.58 -9.33 10.44 -13.62 -0.14 -9.47 16 19 C 0.55 8.40 8.66 -322.81 -2.80 5.60 16 20 N -0.83 -9.05 9.06 29.76 0.27 -8.78 16 21 N -0.57 -9.33 10.38 -9.86 -0.10 -9.44 16 22 C 0.22 3.60 6.47 -81.83 -0.53 3.07 16 23 C -0.11 -1.60 9.41 36.01 0.34 -1.27 16 24 H 0.06 0.90 6.45 -51.93 -0.33 0.57 16 25 H 0.06 0.87 8.06 -51.93 -0.42 0.45 16 26 H 0.05 0.82 7.19 -51.93 -0.37 0.45 16 27 H 0.10 2.13 8.06 -52.48 -0.42 1.70 16 28 H 0.29 6.77 8.30 -40.82 -0.34 6.43 16 29 H 0.10 2.35 4.40 -52.49 -0.23 2.12 16 30 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 31 H 0.16 2.42 8.06 -52.49 -0.42 2.00 16 32 H 0.41 3.63 8.94 -40.82 -0.36 3.27 16 33 H 0.41 3.63 8.94 -40.82 -0.36 3.26 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.10 1.48 4.32 -51.93 -0.22 1.26 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 297.64 15.07 4.49 4.49 Total: -1.00 -27.86 297.64 -9.19 -37.05 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -4.03 Total: 9.65 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: -6.29 Total: -19.34 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: 0.80 Total: -48.02 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.15 Total: 16.18 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -27.86 -9.19 -37.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241646318.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.784 kcal (2) G-P(sol) polarization free energy of solvation -27.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds