Wall clock time and date at job start Mon Mar 30 2020 01:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36231 * 119.94202 * 2 1 4 4 C 1.40935 * 119.88157 * 180.25358 * 3 2 1 5 5 C 1.40997 * 120.11448 * 179.76365 * 4 3 2 6 6 H 1.08004 * 119.99698 * 327.11949 * 5 4 3 7 7 C 1.39975 * 120.00173 * 147.12393 * 5 4 3 8 8 N 1.30821 * 119.99908 * 169.66223 * 7 5 4 9 9 Si 1.86796 * 119.99955 * 349.67037 * 7 5 4 10 10 H 1.48501 * 109.47518 * 89.55395 * 9 7 5 11 11 H 1.48505 * 109.47171 * 209.55298 * 9 7 5 12 12 H 1.48499 * 109.47100 * 329.55113 * 9 7 5 13 13 C 1.40966 * 119.77314 * 359.73723 * 4 3 2 14 14 C 1.36206 * 119.88153 * 359.97438 * 13 4 3 15 15 C 1.39967 * 119.93859 * 179.73551 * 2 1 3 16 16 C 1.47896 * 119.88986 * 0.02562 * 15 2 1 17 17 C 1.40058 * 120.86929 * 110.28647 * 16 15 2 18 18 N 1.32022 * 119.01172 * 180.02562 * 17 16 15 19 19 C 1.32615 * 120.89714 * 359.97438 * 18 17 16 20 20 N 1.38203 * 119.04602 * 180.02562 * 19 18 17 21 21 N 1.32597 * 121.91742 * 0.02961 * 19 18 17 22 22 C 1.32048 * 120.89615 * 359.96741 * 21 19 18 23 23 C 1.50699 * 120.49480 * 179.72426 * 22 21 19 24 24 H 1.09006 * 109.47433 * 266.88168 * 1 2 3 25 25 H 1.08999 * 109.47204 * 26.88025 * 1 2 3 26 26 H 1.08995 * 109.47609 * 146.87999 * 1 2 3 27 27 H 1.08006 * 120.06438 * 0.02562 * 3 2 1 28 28 H 0.96996 * 120.00028 * 179.97438 * 8 7 5 29 29 H 1.07999 * 120.06263 * 179.97438 * 13 4 3 30 30 H 1.07993 * 119.94228 * 179.97438 * 14 13 4 31 31 H 1.07999 * 120.49323 * 0.04700 * 17 16 15 32 32 H 0.97006 * 120.00278 * 180.02562 * 20 19 18 33 33 H 0.96997 * 120.00297 * 0.02796 * 20 19 18 34 34 H 1.08998 * 109.47009 * 88.99532 * 23 22 21 35 35 H 1.09004 * 109.47054 * 208.99094 * 23 22 21 36 36 H 1.08995 * 109.47011 * 328.99657 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1869 1.1805 0.0000 4 6 3.5963 1.1790 -0.0054 5 6 4.3050 2.3979 -0.0105 6 1 3.8953 3.2586 -0.5184 7 6 5.5394 2.4925 0.6426 8 7 6.2903 3.5501 0.4719 9 14 6.1145 1.1087 1.7577 10 1 6.8818 0.1176 0.9613 11 1 6.9829 1.6632 2.8272 12 1 4.9362 0.4451 2.3712 13 6 4.2950 -0.0453 -0.0052 14 6 3.6056 -1.2200 0.0008 15 6 2.2055 -1.2129 0.0056 16 6 1.4622 -2.4915 0.0109 17 6 1.4618 -3.3272 -1.1130 18 7 0.7854 -4.4600 -1.0683 19 6 0.1139 -4.8097 0.0205 20 7 -0.5808 -6.0045 0.0256 21 7 0.0894 -4.0464 1.1044 22 6 0.7404 -2.8981 1.1399 23 6 0.7014 -2.0347 2.3744 24 1 -0.3634 -0.0559 1.0262 25 1 -0.3633 0.9166 -0.4646 26 1 -0.3634 -0.8606 -0.5615 27 1 1.6470 2.1159 0.0004 28 1 7.1456 3.6158 0.9248 29 1 5.3749 -0.0519 -0.0097 30 1 4.1399 -2.1585 0.0005 31 1 2.0070 -3.0491 -2.0029 32 1 -1.0770 -6.2737 0.8145 33 1 -0.5722 -6.5739 -0.7596 34 1 1.5126 -2.3211 3.0438 35 1 0.8171 -0.9888 2.0901 36 1 -0.2535 -2.1698 2.8822 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241646318.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:42 Heat of formation + Delta-G solvation = 43.267731 kcal Electronic energy + Delta-G solvation = -19817.112861 eV Core-core repulsion = 16878.742508 eV Total energy + Delta-G solvation = -2938.370352 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.93913 -39.84753 -36.56902 -35.43777 -35.05500 -33.64196 -32.75712 -30.87882 -29.38616 -27.85674 -26.55279 -24.37528 -23.45000 -22.45468 -21.85188 -19.10079 -18.90000 -18.23015 -17.78397 -16.74972 -16.52370 -16.32436 -15.65354 -15.29907 -15.09255 -14.83202 -14.64228 -14.20688 -14.03029 -13.92246 -13.74498 -13.51099 -13.07294 -12.76093 -12.55549 -12.41533 -12.23100 -11.90417 -11.78909 -11.53775 -11.37853 -11.27661 -10.92172 -10.19277 -9.47087 -9.26640 -8.89557 -8.83786 -6.48003 0.18471 0.22288 0.77685 0.91693 1.28571 1.42324 1.50720 2.13147 2.27706 2.59226 2.93536 3.23730 3.46985 3.71459 3.95133 4.18952 4.26006 4.33104 4.39859 4.58962 4.68099 4.72209 4.73603 4.85198 4.98966 5.02696 5.09323 5.11843 5.22343 5.37707 5.45251 5.65633 5.82854 5.94536 6.01756 6.06846 6.26925 6.40973 6.44499 6.46644 6.75973 6.85560 7.49339 8.22549 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.031720 B = 0.005117 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.505797 B = 5470.480531 C = 5669.634732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.031 4.031 3 C -0.212 4.212 4 C 0.082 3.918 5 C -0.479 4.479 6 H 0.056 0.944 7 C 0.045 3.955 8 N -0.857 5.857 9 Si 0.968 3.032 10 H -0.261 1.261 11 H -0.284 1.284 12 H -0.247 1.247 13 C -0.251 4.251 14 C -0.060 4.060 15 C -0.146 4.146 16 C -0.178 4.178 17 C 0.191 3.809 18 N -0.586 5.586 19 C 0.542 3.458 20 N -0.809 5.809 21 N -0.582 5.582 22 C 0.221 3.779 23 C -0.110 4.110 24 H 0.080 0.920 25 H 0.067 0.933 26 H 0.055 0.945 27 H 0.103 0.897 28 H 0.292 0.708 29 H 0.097 0.903 30 H 0.115 0.885 31 H 0.177 0.823 32 H 0.421 0.579 33 H 0.421 0.579 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.556 -14.903 2.249 18.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.031 4.031 3 C -0.232 4.232 4 C 0.079 3.921 5 C -0.509 4.509 6 H 0.075 0.925 7 C -0.168 4.168 8 N -0.484 5.484 9 Si 0.792 3.208 10 H -0.186 1.186 11 H -0.211 1.211 12 H -0.171 1.171 13 C -0.270 4.270 14 C -0.078 4.078 15 C -0.148 4.148 16 C -0.185 4.185 17 C 0.024 3.976 18 N -0.309 5.309 19 C 0.183 3.817 20 N -0.360 5.360 21 N -0.306 5.306 22 C 0.073 3.927 23 C -0.167 4.167 24 H 0.098 0.902 25 H 0.086 0.914 26 H 0.074 0.926 27 H 0.121 0.879 28 H 0.103 0.897 29 H 0.115 0.885 30 H 0.133 0.867 31 H 0.194 0.806 32 H 0.253 0.747 33 H 0.254 0.746 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.871 -15.589 2.269 19.140 hybrid contribution 1.090 0.649 0.068 1.270 sum -9.781 -14.939 2.337 18.009 Atomic orbital electron populations 1.20818 0.90744 1.02010 1.02540 1.19487 0.95691 0.91668 0.96298 1.20759 0.93228 0.96962 1.12205 1.17892 0.92993 0.92329 0.88847 1.19466 1.02708 0.97495 1.31250 0.92538 1.26814 0.94728 0.98484 0.96787 1.69680 1.11184 1.30091 1.37480 0.85487 0.79235 0.78066 0.77992 1.18634 1.21079 1.17101 1.20827 0.98393 0.93242 1.14529 1.20599 0.93432 0.96610 0.97150 1.17722 0.91495 0.90138 1.15433 1.19924 1.04567 0.97854 0.96181 1.23393 0.90420 0.86491 0.97263 1.67866 1.15044 1.20244 1.27746 1.19682 0.88370 0.88477 0.85205 1.41584 1.54662 1.18137 1.21571 1.67678 1.27065 1.07813 1.28068 1.21845 0.86910 0.89044 0.94882 1.20942 1.04151 0.98561 0.93006 0.90162 0.91381 0.92579 0.87886 0.89729 0.88505 0.86735 0.80600 0.74651 0.74634 0.89571 0.89621 0.88959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.06 8.70 71.23 0.62 -2.44 16 2 C -0.03 -1.15 4.81 -19.91 -0.10 -1.24 16 3 C -0.21 -9.23 9.35 22.46 0.21 -9.02 16 4 C 0.08 4.02 5.12 -21.27 -0.11 3.91 16 5 C -0.48 -26.38 9.58 23.37 0.22 -26.16 16 6 H 0.06 3.36 8.06 -2.91 -0.02 3.34 16 7 C 0.05 2.41 5.48 85.26 0.47 2.87 16 8 N -0.86 -47.00 13.93 21.83 0.30 -46.70 16 9 Si 0.97 42.51 24.40 68.60 1.67 44.18 16 10 H -0.26 -10.90 6.56 99.48 0.65 -10.25 16 11 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 12 H -0.25 -10.88 6.77 99.48 0.67 -10.21 16 13 C -0.25 -11.38 6.95 22.46 0.16 -11.22 16 14 C -0.06 -2.34 9.71 22.23 0.22 -2.12 16 15 C -0.15 -5.25 4.58 -19.87 -0.09 -5.34 16 16 C -0.18 -5.60 4.00 -19.84 -0.08 -5.68 16 17 C 0.19 5.65 11.09 85.11 0.94 6.59 16 18 N -0.59 -16.91 10.44 -196.99 -2.06 -18.97 16 19 C 0.54 14.63 8.66 261.49 2.26 16.90 16 20 N -0.81 -14.43 9.06 -59.76 -0.54 -14.97 16 21 N -0.58 -16.74 10.38 -185.09 -1.92 -18.66 16 22 C 0.22 6.55 6.47 42.96 0.28 6.83 16 23 C -0.11 -2.84 9.41 71.24 0.67 -2.17 16 24 H 0.08 2.09 6.45 -2.38 -0.02 2.07 16 25 H 0.07 1.86 8.06 -2.39 -0.02 1.85 16 26 H 0.06 1.61 7.19 -2.39 -0.02 1.59 16 27 H 0.10 4.37 8.06 -2.91 -0.02 4.35 16 28 H 0.29 14.47 8.30 -92.71 -0.77 13.70 16 29 H 0.10 4.45 4.40 -2.91 -0.01 4.44 16 30 H 0.11 3.97 8.06 -2.91 -0.02 3.95 16 31 H 0.18 4.66 8.06 -2.91 -0.02 4.63 16 32 H 0.42 5.77 8.94 -92.70 -0.83 4.94 16 33 H 0.42 5.81 8.94 -92.71 -0.83 4.98 16 34 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.09 2.39 4.32 -2.39 -0.01 2.38 16 36 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -61.18 297.64 2.53 -58.64 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: -0.60 Total: 24.77 kcal Atomic # 6 Polarization: -33.97 SS G_CDS: 5.67 Total: -28.29 kcal Atomic # 7 Polarization: -95.09 SS G_CDS: -4.21 Total: -99.30 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 1.67 Total: 44.18 kcal Total: -61.18 2.53 -58.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241646318.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.911 kcal (2) G-P(sol) polarization free energy of solvation -61.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds