Wall clock time and date at job start Mon Mar 30 2020 00:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42906 * 109.46983 * 2 1 4 4 C 1.35653 * 117.00122 * 180.02562 * 3 2 1 5 5 C 1.39012 * 119.55257 * 179.97438 * 4 3 2 6 6 C 1.38150 * 119.23092 * 179.97438 * 5 4 3 7 7 C 1.39906 * 118.38280 * 0.02562 * 6 5 4 8 8 C 1.48393 * 120.47306 * 179.97438 * 7 6 5 9 9 C 1.39743 * 120.00048 * 359.72129 * 8 7 6 10 10 C 1.38393 * 120.37432 * 180.27913 * 9 8 7 11 11 C 1.37714 * 120.37981 * 359.97438 * 10 9 8 12 12 C 1.40756 * 119.99497 * 0.02562 * 11 10 9 13 13 C 1.41420 * 120.18553 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00522 * 150.17626 * 13 12 11 15 15 C 1.39935 * 120.00106 * 330.17001 * 13 12 11 16 16 N 1.30831 * 119.99744 * 161.73672 * 15 13 12 17 17 Si 1.86799 * 120.00097 * 341.73769 * 15 13 12 18 18 H 1.48502 * 109.46829 * 95.40900 * 17 15 13 19 19 H 1.48490 * 109.46954 * 215.41248 * 17 15 13 20 20 H 1.48508 * 109.46816 * 335.41425 * 17 15 13 21 21 C 1.38738 * 119.99699 * 179.97438 * 8 7 6 22 22 C 1.39176 * 119.05250 * 0.24923 * 7 6 5 23 23 N 1.31811 * 120.66394 * 359.50034 * 22 7 6 24 24 H 1.09008 * 109.47478 * 299.99915 * 1 2 3 25 25 H 1.08994 * 109.47265 * 60.00117 * 1 2 3 26 26 H 1.09004 * 109.47182 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46872 * 239.99990 * 2 1 3 28 28 H 1.09000 * 109.47093 * 119.99477 * 2 1 3 29 29 H 1.07994 * 120.38587 * 359.97438 * 5 4 3 30 30 H 1.08001 * 120.80546 * 179.97438 * 6 5 4 31 31 H 1.07999 * 119.81146 * 0.27705 * 9 8 7 32 32 H 1.07999 * 119.80274 * 179.97438 * 10 9 8 33 33 H 1.08001 * 120.00076 * 179.97438 * 11 10 9 34 34 H 0.97004 * 119.99482 * 180.02562 * 16 15 13 35 35 H 1.07998 * 120.19309 * 359.74499 * 21 8 7 36 36 H 1.08003 * 119.66619 * 179.74688 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3511 1.5251 -0.0005 5 6 3.8723 2.8138 -0.0011 6 6 5.2429 2.9872 -0.0011 7 6 6.0572 1.8495 -0.0011 8 6 7.5352 1.9820 -0.0017 9 6 8.1232 3.2497 -0.0081 10 6 9.5007 3.3821 -0.0145 11 6 10.3077 2.2662 -0.0141 12 6 9.7322 0.9817 -0.0076 13 6 10.5571 -0.1670 -0.0066 14 1 10.2147 -1.0774 0.4629 15 6 11.8170 -0.1243 -0.6140 16 7 12.7159 -1.0284 -0.3202 17 14 12.2155 1.2237 -1.8443 18 1 12.9138 2.3359 -1.1510 19 1 13.0922 0.6770 -2.9108 20 1 10.9570 1.7298 -2.4489 21 6 8.3333 0.8471 -0.0011 22 6 5.4612 0.5919 -0.0064 23 7 4.1488 0.4699 -0.0014 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 3.2135 3.6696 -0.0015 30 1 5.6752 3.9769 -0.0020 31 1 7.4990 4.1310 -0.0082 32 1 9.9453 4.3663 -0.0199 33 1 11.3820 2.3767 -0.0195 34 1 13.5894 -0.9985 -0.7410 35 1 7.8822 -0.1341 0.0039 36 1 6.0804 -0.2931 -0.0106 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241704254.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:17 Heat of formation + Delta-G solvation = 6.078162 kcal Electronic energy + Delta-G solvation = -18966.721335 eV Core-core repulsion = 15994.445570 eV Total energy + Delta-G solvation = -2972.275764 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.43843 -38.41023 -37.30382 -33.86880 -32.53026 -32.26283 -30.96263 -30.38380 -27.92465 -25.45596 -24.12541 -23.40801 -22.29343 -20.76659 -20.28736 -18.44190 -17.49896 -16.57321 -16.24684 -15.98224 -15.06648 -14.86985 -14.18353 -13.99153 -13.93287 -13.56636 -13.20672 -12.97178 -12.74949 -12.61728 -12.54269 -11.99041 -11.93432 -11.58036 -11.53173 -10.97819 -10.86471 -10.70113 -10.45140 -9.89570 -9.77453 -9.73668 -9.30439 -9.20661 -8.68581 -7.76636 -7.19162 -6.99450 -4.55224 1.15122 1.42197 2.54794 2.72644 3.07657 3.09039 3.18501 3.28592 3.93782 4.02976 4.49037 4.52504 4.89488 4.93407 5.07726 5.18891 5.22102 5.23642 5.35990 5.40345 5.63619 5.69809 5.77623 5.86415 6.02883 6.09437 6.14045 6.36868 6.43291 6.56309 6.72980 6.87830 7.05323 7.31721 7.37299 7.50083 7.63925 7.78557 7.96136 8.08333 8.29310 8.56378 8.74073 10.02895 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.033822 B = 0.003927 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.671073 B = 7128.333931 C = 7719.604205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.067 3.933 3 O -0.312 6.312 4 C 0.300 3.700 5 C -0.188 4.188 6 C -0.043 4.043 7 C -0.102 4.102 8 C -0.019 4.019 9 C -0.229 4.229 10 C -0.078 4.078 11 C -0.232 4.232 12 C 0.092 3.908 13 C -0.449 4.449 14 H 0.092 0.908 15 C 0.084 3.916 16 N -0.807 5.807 17 Si 0.910 3.090 18 H -0.270 1.270 19 H -0.291 1.291 20 H -0.244 1.244 21 C -0.190 4.190 22 C 0.140 3.860 23 N -0.538 5.538 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.137 0.863 30 H 0.143 0.857 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.285 0.715 35 H 0.105 0.895 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.952 4.708 -0.720 15.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.009 4.009 3 O -0.221 6.221 4 C 0.122 3.878 5 C -0.209 4.209 6 C -0.068 4.068 7 C -0.104 4.104 8 C -0.020 4.020 9 C -0.248 4.248 10 C -0.096 4.096 11 C -0.251 4.251 12 C 0.089 3.911 13 C -0.477 4.477 14 H 0.110 0.890 15 C -0.135 4.135 16 N -0.431 5.431 17 Si 0.737 3.263 18 H -0.196 1.196 19 H -0.218 1.218 20 H -0.167 1.167 21 C -0.209 4.209 22 C -0.016 4.016 23 N -0.260 5.260 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.154 0.846 30 H 0.160 0.840 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.119 0.881 34 H 0.096 0.904 35 H 0.123 0.877 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -15.325 3.879 -0.724 15.825 hybrid contribution 0.867 1.070 -0.488 1.462 sum -14.458 4.950 -1.212 15.330 Atomic orbital electron populations 1.21813 0.93359 1.02689 1.03084 1.22535 0.94358 0.81491 1.02514 1.86178 1.17304 1.30274 1.88311 1.19783 0.83726 0.90140 0.94138 1.20928 0.95612 0.95438 1.08917 1.21529 0.91670 0.99513 0.94085 1.19927 0.94780 0.93500 1.02194 1.18196 0.88629 0.94273 1.00911 1.20383 0.94196 0.94871 1.15388 1.20532 0.93491 0.97002 0.98602 1.21128 0.98131 0.92996 1.12889 1.17640 0.91819 0.92529 0.89062 1.19485 0.98073 0.98578 1.31557 0.89048 1.26149 0.94718 0.96253 0.96335 1.69699 1.04737 1.33140 1.35544 0.86322 0.79861 0.80199 0.79922 1.19636 1.21799 1.16700 1.21096 0.93287 0.95870 1.10671 1.22663 0.88422 0.97452 0.93076 1.67268 1.06657 1.32931 1.19166 0.91808 0.91805 0.90475 0.91748 0.91750 0.84550 0.83970 0.88524 0.88566 0.88126 0.90405 0.87693 0.81805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.28 37.16 0.38 -0.87 16 2 C 0.07 0.76 6.02 37.16 0.22 0.98 16 3 O -0.31 -4.38 10.11 -18.66 -0.19 -4.57 16 4 C 0.30 4.67 7.49 -17.07 -0.13 4.54 16 5 C -0.19 -2.67 10.03 -39.33 -0.39 -3.06 16 6 C -0.04 -0.65 9.52 -38.99 -0.37 -1.02 16 7 C -0.10 -1.79 5.89 -104.74 -0.62 -2.41 16 8 C -0.02 -0.39 5.87 -104.97 -0.62 -1.01 16 9 C -0.23 -4.51 9.45 -38.96 -0.37 -4.88 16 10 C -0.08 -1.62 10.01 -39.72 -0.40 -2.02 16 11 C -0.23 -5.43 7.17 -38.82 -0.28 -5.71 16 12 C 0.09 2.27 5.10 -106.87 -0.55 1.73 16 13 C -0.45 -11.83 9.57 -37.74 -0.36 -12.19 16 14 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 15 C 0.08 2.17 5.40 -17.34 -0.09 2.08 16 16 N -0.81 -21.20 13.93 55.55 0.77 -20.42 16 17 Si 0.91 20.41 24.52 -169.99 -4.17 16.25 16 18 H -0.27 -5.87 6.71 56.52 0.38 -5.49 16 19 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.24 -5.60 6.86 56.52 0.39 -5.22 16 21 C -0.19 -4.23 9.18 -38.53 -0.35 -4.58 16 22 C 0.14 2.38 10.59 -17.21 -0.18 2.19 16 23 N -0.54 -8.90 9.19 -13.05 -0.12 -9.02 16 24 H 0.06 0.51 8.14 -51.92 -0.42 0.08 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 28 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 29 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 30 H 0.14 1.86 6.30 -52.49 -0.33 1.53 16 31 H 0.10 1.61 6.24 -52.49 -0.33 1.29 16 32 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 33 H 0.10 2.35 4.72 -52.49 -0.25 2.11 16 34 H 0.29 6.79 8.30 -40.82 -0.34 6.45 16 35 H 0.11 2.17 6.21 -52.49 -0.33 1.84 16 36 H 0.16 2.65 6.21 -52.48 -0.33 2.32 16 LS Contribution 302.78 15.07 4.56 4.56 Total: -1.00 -27.71 302.78 -7.35 -35.06 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -4.11 Total: 4.36 kcal Atomic # 6 Polarization: -22.12 SS G_CDS: -4.10 Total: -26.22 kcal Atomic # 7 Polarization: -30.09 SS G_CDS: 0.65 Total: -29.44 kcal Atomic # 8 Polarization: -4.38 SS G_CDS: -0.19 Total: -4.57 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.17 Total: 16.25 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.71 -7.35 -35.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241704254.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.139 kcal (2) G-P(sol) polarization free energy of solvation -27.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds