Wall clock time and date at job start Mon Mar 30 2020 00:46:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 O 1.42906 * 109.46983 * 2 1
4 4 C 1.35653 * 117.00122 * 180.02562 * 3 2 1
5 5 C 1.39012 * 119.55257 * 179.97438 * 4 3 2
6 6 C 1.38150 * 119.23092 * 179.97438 * 5 4 3
7 7 C 1.39906 * 118.38280 * 0.02562 * 6 5 4
8 8 C 1.48393 * 120.47306 * 179.97438 * 7 6 5
9 9 C 1.39743 * 120.00048 * 359.72129 * 8 7 6
10 10 C 1.38393 * 120.37432 * 180.27913 * 9 8 7
11 11 C 1.37714 * 120.37981 * 359.97438 * 10 9 8
12 12 C 1.40756 * 119.99497 * 0.02562 * 11 10 9
13 13 C 1.41420 * 120.18553 * 180.02562 * 12 11 10
14 14 H 1.08001 * 120.00522 * 150.17626 * 13 12 11
15 15 C 1.39935 * 120.00106 * 330.17001 * 13 12 11
16 16 N 1.30831 * 119.99744 * 161.73672 * 15 13 12
17 17 Si 1.86799 * 120.00097 * 341.73769 * 15 13 12
18 18 H 1.48502 * 109.46829 * 95.40900 * 17 15 13
19 19 H 1.48490 * 109.46954 * 215.41248 * 17 15 13
20 20 H 1.48508 * 109.46816 * 335.41425 * 17 15 13
21 21 C 1.38738 * 119.99699 * 179.97438 * 8 7 6
22 22 C 1.39176 * 119.05250 * 0.24923 * 7 6 5
23 23 N 1.31811 * 120.66394 * 359.50034 * 22 7 6
24 24 H 1.09008 * 109.47478 * 299.99915 * 1 2 3
25 25 H 1.08994 * 109.47265 * 60.00117 * 1 2 3
26 26 H 1.09004 * 109.47182 * 180.02562 * 1 2 3
27 27 H 1.08996 * 109.46872 * 239.99990 * 2 1 3
28 28 H 1.09000 * 109.47093 * 119.99477 * 2 1 3
29 29 H 1.07994 * 120.38587 * 359.97438 * 5 4 3
30 30 H 1.08001 * 120.80546 * 179.97438 * 6 5 4
31 31 H 1.07999 * 119.81146 * 0.27705 * 9 8 7
32 32 H 1.07999 * 119.80274 * 179.97438 * 10 9 8
33 33 H 1.08001 * 120.00076 * 179.97438 * 11 10 9
34 34 H 0.97004 * 119.99482 * 180.02562 * 16 15 13
35 35 H 1.07998 * 120.19309 * 359.74499 * 21 8 7
36 36 H 1.08003 * 119.66619 * 179.74688 * 22 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0063 1.3473 0.0000
4 6 3.3511 1.5251 -0.0005
5 6 3.8723 2.8138 -0.0011
6 6 5.2429 2.9872 -0.0011
7 6 6.0572 1.8495 -0.0011
8 6 7.5352 1.9820 -0.0017
9 6 8.1232 3.2497 -0.0081
10 6 9.5007 3.3821 -0.0145
11 6 10.3077 2.2662 -0.0141
12 6 9.7322 0.9817 -0.0076
13 6 10.5571 -0.1670 -0.0066
14 1 10.2147 -1.0774 0.4629
15 6 11.8170 -0.1243 -0.6140
16 7 12.7159 -1.0284 -0.3202
17 14 12.2155 1.2237 -1.8443
18 1 12.9138 2.3359 -1.1510
19 1 13.0922 0.6770 -2.9108
20 1 10.9570 1.7298 -2.4489
21 6 8.3333 0.8471 -0.0011
22 6 5.4612 0.5919 -0.0064
23 7 4.1488 0.4699 -0.0014
24 1 -0.3634 0.5138 0.8900
25 1 -0.3633 0.5138 -0.8899
26 1 -0.3634 -1.0277 0.0005
27 1 1.8932 -0.5138 -0.8900
28 1 1.8933 -0.5137 0.8900
29 1 3.2135 3.6696 -0.0015
30 1 5.6752 3.9769 -0.0020
31 1 7.4990 4.1310 -0.0082
32 1 9.9453 4.3663 -0.0199
33 1 11.3820 2.3767 -0.0195
34 1 13.5894 -0.9985 -0.7410
35 1 7.8822 -0.1341 0.0039
36 1 6.0804 -0.2931 -0.0106
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001241704254.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:46:17
Heat of formation + Delta-G solvation = 6.078162 kcal
Electronic energy + Delta-G solvation = -18966.721335 eV
Core-core repulsion = 15994.445570 eV
Total energy + Delta-G solvation = -2972.275764 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 269.116 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-40.43843 -38.41023 -37.30382 -33.86880 -32.53026 -32.26283 -30.96263 -30.38380
-27.92465 -25.45596 -24.12541 -23.40801 -22.29343 -20.76659 -20.28736 -18.44190
-17.49896 -16.57321 -16.24684 -15.98224 -15.06648 -14.86985 -14.18353 -13.99153
-13.93287 -13.56636 -13.20672 -12.97178 -12.74949 -12.61728 -12.54269 -11.99041
-11.93432 -11.58036 -11.53173 -10.97819 -10.86471 -10.70113 -10.45140 -9.89570
-9.77453 -9.73668 -9.30439 -9.20661 -8.68581 -7.76636 -7.19162 -6.99450
-4.55224 1.15122 1.42197 2.54794 2.72644 3.07657 3.09039 3.18501
3.28592 3.93782 4.02976 4.49037 4.52504 4.89488 4.93407 5.07726
5.18891 5.22102 5.23642 5.35990 5.40345 5.63619 5.69809 5.77623
5.86415 6.02883 6.09437 6.14045 6.36868 6.43291 6.56309 6.72980
6.87830 7.05323 7.31721 7.37299 7.50083 7.63925 7.78557 7.96136
8.08333 8.29310 8.56378 8.74073 10.02895
Molecular weight = 269.12amu
Principal moments of inertia in cm(-1)
A = 0.033822 B = 0.003927 C = 0.003626
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 827.671073 B = 7128.333931 C = 7719.604205
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.067 3.933
3 O -0.312 6.312
4 C 0.300 3.700
5 C -0.188 4.188
6 C -0.043 4.043
7 C -0.102 4.102
8 C -0.019 4.019
9 C -0.229 4.229
10 C -0.078 4.078
11 C -0.232 4.232
12 C 0.092 3.908
13 C -0.449 4.449
14 H 0.092 0.908
15 C 0.084 3.916
16 N -0.807 5.807
17 Si 0.910 3.090
18 H -0.270 1.270
19 H -0.291 1.291
20 H -0.244 1.244
21 C -0.190 4.190
22 C 0.140 3.860
23 N -0.538 5.538
24 H 0.063 0.937
25 H 0.063 0.937
26 H 0.076 0.924
27 H 0.064 0.936
28 H 0.064 0.936
29 H 0.137 0.863
30 H 0.143 0.857
31 H 0.097 0.903
32 H 0.096 0.904
33 H 0.101 0.899
34 H 0.285 0.715
35 H 0.105 0.895
36 H 0.165 0.835
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.952 4.708 -0.720 15.692
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.009 4.009
3 O -0.221 6.221
4 C 0.122 3.878
5 C -0.209 4.209
6 C -0.068 4.068
7 C -0.104 4.104
8 C -0.020 4.020
9 C -0.248 4.248
10 C -0.096 4.096
11 C -0.251 4.251
12 C 0.089 3.911
13 C -0.477 4.477
14 H 0.110 0.890
15 C -0.135 4.135
16 N -0.431 5.431
17 Si 0.737 3.263
18 H -0.196 1.196
19 H -0.218 1.218
20 H -0.167 1.167
21 C -0.209 4.209
22 C -0.016 4.016
23 N -0.260 5.260
24 H 0.082 0.918
25 H 0.082 0.918
26 H 0.095 0.905
27 H 0.083 0.917
28 H 0.082 0.918
29 H 0.154 0.846
30 H 0.160 0.840
31 H 0.115 0.885
32 H 0.114 0.886
33 H 0.119 0.881
34 H 0.096 0.904
35 H 0.123 0.877
36 H 0.182 0.818
Dipole moment (debyes) X Y Z Total
from point charges -15.325 3.879 -0.724 15.825
hybrid contribution 0.867 1.070 -0.488 1.462
sum -14.458 4.950 -1.212 15.330
Atomic orbital electron populations
1.21813 0.93359 1.02689 1.03084 1.22535 0.94358 0.81491 1.02514
1.86178 1.17304 1.30274 1.88311 1.19783 0.83726 0.90140 0.94138
1.20928 0.95612 0.95438 1.08917 1.21529 0.91670 0.99513 0.94085
1.19927 0.94780 0.93500 1.02194 1.18196 0.88629 0.94273 1.00911
1.20383 0.94196 0.94871 1.15388 1.20532 0.93491 0.97002 0.98602
1.21128 0.98131 0.92996 1.12889 1.17640 0.91819 0.92529 0.89062
1.19485 0.98073 0.98578 1.31557 0.89048 1.26149 0.94718 0.96253
0.96335 1.69699 1.04737 1.33140 1.35544 0.86322 0.79861 0.80199
0.79922 1.19636 1.21799 1.16700 1.21096 0.93287 0.95870 1.10671
1.22663 0.88422 0.97452 0.93076 1.67268 1.06657 1.32931 1.19166
0.91808 0.91805 0.90475 0.91748 0.91750 0.84550 0.83970 0.88524
0.88566 0.88126 0.90405 0.87693 0.81805
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.25 10.28 37.16 0.38 -0.87 16
2 C 0.07 0.76 6.02 37.16 0.22 0.98 16
3 O -0.31 -4.38 10.11 -18.66 -0.19 -4.57 16
4 C 0.30 4.67 7.49 -17.07 -0.13 4.54 16
5 C -0.19 -2.67 10.03 -39.33 -0.39 -3.06 16
6 C -0.04 -0.65 9.52 -38.99 -0.37 -1.02 16
7 C -0.10 -1.79 5.89 -104.74 -0.62 -2.41 16
8 C -0.02 -0.39 5.87 -104.97 -0.62 -1.01 16
9 C -0.23 -4.51 9.45 -38.96 -0.37 -4.88 16
10 C -0.08 -1.62 10.01 -39.72 -0.40 -2.02 16
11 C -0.23 -5.43 7.17 -38.82 -0.28 -5.71 16
12 C 0.09 2.27 5.10 -106.87 -0.55 1.73 16
13 C -0.45 -11.83 9.57 -37.74 -0.36 -12.19 16
14 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16
15 C 0.08 2.17 5.40 -17.34 -0.09 2.08 16
16 N -0.81 -21.20 13.93 55.55 0.77 -20.42 16
17 Si 0.91 20.41 24.52 -169.99 -4.17 16.25 16
18 H -0.27 -5.87 6.71 56.52 0.38 -5.49 16
19 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16
20 H -0.24 -5.60 6.86 56.52 0.39 -5.22 16
21 C -0.19 -4.23 9.18 -38.53 -0.35 -4.58 16
22 C 0.14 2.38 10.59 -17.21 -0.18 2.19 16
23 N -0.54 -8.90 9.19 -13.05 -0.12 -9.02 16
24 H 0.06 0.51 8.14 -51.92 -0.42 0.08 16
25 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16
26 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16
27 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16
28 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16
29 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16
30 H 0.14 1.86 6.30 -52.49 -0.33 1.53 16
31 H 0.10 1.61 6.24 -52.49 -0.33 1.29 16
32 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16
33 H 0.10 2.35 4.72 -52.49 -0.25 2.11 16
34 H 0.29 6.79 8.30 -40.82 -0.34 6.45 16
35 H 0.11 2.17 6.21 -52.49 -0.33 1.84 16
36 H 0.16 2.65 6.21 -52.48 -0.33 2.32 16
LS Contribution 302.78 15.07 4.56 4.56
Total: -1.00 -27.71 302.78 -7.35 -35.06
By element:
Atomic # 1 Polarization: 8.47 SS G_CDS: -4.11 Total: 4.36 kcal
Atomic # 6 Polarization: -22.12 SS G_CDS: -4.10 Total: -26.22 kcal
Atomic # 7 Polarization: -30.09 SS G_CDS: 0.65 Total: -29.44 kcal
Atomic # 8 Polarization: -4.38 SS G_CDS: -0.19 Total: -4.57 kcal
Atomic # 14 Polarization: 20.41 SS G_CDS: -4.17 Total: 16.25 kcal
Total LS contribution 4.56 Total: 4.56 kcal
Total: -27.71 -7.35 -35.06 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001241704254.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 41.139 kcal
(2) G-P(sol) polarization free energy of solvation -27.714 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.425 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.347 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.061 kcal
(6) G-S(sol) free energy of system = (1) + (5) 6.078 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds