Wall clock time and date at job start Mon Mar 30 2020 00:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42906 * 109.46983 * 2 1 4 4 C 1.35653 * 117.00122 * 180.02562 * 3 2 1 5 5 C 1.39012 * 119.55257 * 179.97438 * 4 3 2 6 6 C 1.38150 * 119.23092 * 179.97438 * 5 4 3 7 7 C 1.39906 * 118.38280 * 0.02562 * 6 5 4 8 8 C 1.48393 * 120.47306 * 179.97438 * 7 6 5 9 9 C 1.39743 * 120.00048 * 359.72129 * 8 7 6 10 10 C 1.38393 * 120.37432 * 180.27913 * 9 8 7 11 11 C 1.37714 * 120.37981 * 359.97438 * 10 9 8 12 12 C 1.40756 * 119.99497 * 0.02562 * 11 10 9 13 13 C 1.41420 * 120.18553 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00522 * 150.17626 * 13 12 11 15 15 C 1.39935 * 120.00106 * 330.17001 * 13 12 11 16 16 N 1.30831 * 119.99744 * 161.73672 * 15 13 12 17 17 Si 1.86799 * 120.00097 * 341.73769 * 15 13 12 18 18 H 1.48502 * 109.46829 * 95.40900 * 17 15 13 19 19 H 1.48490 * 109.46954 * 215.41248 * 17 15 13 20 20 H 1.48508 * 109.46816 * 335.41425 * 17 15 13 21 21 C 1.38738 * 119.99699 * 179.97438 * 8 7 6 22 22 C 1.39176 * 119.05250 * 0.24923 * 7 6 5 23 23 N 1.31811 * 120.66394 * 359.50034 * 22 7 6 24 24 H 1.09008 * 109.47478 * 299.99915 * 1 2 3 25 25 H 1.08994 * 109.47265 * 60.00117 * 1 2 3 26 26 H 1.09004 * 109.47182 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46872 * 239.99990 * 2 1 3 28 28 H 1.09000 * 109.47093 * 119.99477 * 2 1 3 29 29 H 1.07994 * 120.38587 * 359.97438 * 5 4 3 30 30 H 1.08001 * 120.80546 * 179.97438 * 6 5 4 31 31 H 1.07999 * 119.81146 * 0.27705 * 9 8 7 32 32 H 1.07999 * 119.80274 * 179.97438 * 10 9 8 33 33 H 1.08001 * 120.00076 * 179.97438 * 11 10 9 34 34 H 0.97004 * 119.99482 * 180.02562 * 16 15 13 35 35 H 1.07998 * 120.19309 * 359.74499 * 21 8 7 36 36 H 1.08003 * 119.66619 * 179.74688 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3511 1.5251 -0.0005 5 6 3.8723 2.8138 -0.0011 6 6 5.2429 2.9872 -0.0011 7 6 6.0572 1.8495 -0.0011 8 6 7.5352 1.9820 -0.0017 9 6 8.1232 3.2497 -0.0081 10 6 9.5007 3.3821 -0.0145 11 6 10.3077 2.2662 -0.0141 12 6 9.7322 0.9817 -0.0076 13 6 10.5571 -0.1670 -0.0066 14 1 10.2147 -1.0774 0.4629 15 6 11.8170 -0.1243 -0.6140 16 7 12.7159 -1.0284 -0.3202 17 14 12.2155 1.2237 -1.8443 18 1 12.9138 2.3359 -1.1510 19 1 13.0922 0.6770 -2.9108 20 1 10.9570 1.7298 -2.4489 21 6 8.3333 0.8471 -0.0011 22 6 5.4612 0.5919 -0.0064 23 7 4.1488 0.4699 -0.0014 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 3.2135 3.6696 -0.0015 30 1 5.6752 3.9769 -0.0020 31 1 7.4990 4.1310 -0.0082 32 1 9.9453 4.3663 -0.0199 33 1 11.3820 2.3767 -0.0195 34 1 13.5894 -0.9985 -0.7410 35 1 7.8822 -0.1341 0.0039 36 1 6.0804 -0.2931 -0.0106 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241704254.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:17 Heat of formation + Delta-G solvation = -10.310355 kcal Electronic energy + Delta-G solvation = -18967.431994 eV Core-core repulsion = 15994.445570 eV Total energy + Delta-G solvation = -2972.986424 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.65556 -39.83303 -38.69526 -35.64957 -33.96813 -33.34337 -32.12640 -32.08474 -29.35172 -27.20931 -25.27533 -24.80033 -23.38636 -22.31893 -21.91325 -19.57538 -19.26677 -17.96420 -17.50990 -17.27817 -16.60224 -16.48534 -15.55826 -15.42100 -15.00017 -14.90697 -14.60082 -14.47434 -14.33236 -13.89306 -13.55087 -13.40720 -13.23097 -13.09494 -12.65540 -12.58668 -12.43837 -12.19141 -11.70195 -11.62634 -11.51660 -11.10704 -10.92618 -10.57279 -10.06947 -9.53021 -8.89228 -8.70704 -6.50829 -0.21070 0.22921 0.81427 1.12283 1.27414 1.41856 1.50279 2.04585 2.12679 2.54306 2.88432 3.28344 3.56657 3.77450 3.97629 4.02263 4.08321 4.09351 4.24442 4.37983 4.46678 4.53419 4.65975 4.75149 4.78712 4.89530 4.95573 4.99251 5.04444 5.20129 5.24131 5.30785 5.47189 5.60754 5.80312 5.89741 5.99098 6.19819 6.27256 6.40104 6.73458 6.80640 6.84032 8.19803 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.033822 B = 0.003927 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.671073 B = 7128.333931 C = 7719.604205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.060 3.940 3 O -0.314 6.314 4 C 0.295 3.705 5 C -0.181 4.181 6 C -0.030 4.030 7 C -0.126 4.126 8 C -0.015 4.015 9 C -0.211 4.211 10 C -0.081 4.081 11 C -0.249 4.249 12 C 0.073 3.927 13 C -0.489 4.489 14 H 0.055 0.945 15 C 0.047 3.953 16 N -0.853 5.853 17 Si 0.966 3.034 18 H -0.256 1.256 19 H -0.280 1.280 20 H -0.252 1.252 21 C -0.208 4.208 22 C 0.131 3.869 23 N -0.552 5.552 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.097 0.903 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.171 0.829 30 H 0.172 0.828 31 H 0.140 0.860 32 H 0.134 0.866 33 H 0.097 0.903 34 H 0.293 0.707 35 H 0.104 0.896 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.509 8.210 -1.266 19.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.015 4.015 3 O -0.222 6.222 4 C 0.116 3.884 5 C -0.201 4.201 6 C -0.055 4.055 7 C -0.129 4.129 8 C -0.016 4.016 9 C -0.230 4.230 10 C -0.099 4.099 11 C -0.268 4.268 12 C 0.071 3.929 13 C -0.518 4.518 14 H 0.073 0.927 15 C -0.167 4.167 16 N -0.480 5.480 17 Si 0.789 3.211 18 H -0.181 1.181 19 H -0.207 1.207 20 H -0.176 1.176 21 C -0.228 4.228 22 C -0.024 4.024 23 N -0.276 5.276 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.116 0.884 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.188 0.812 30 H 0.189 0.811 31 H 0.158 0.842 32 H 0.151 0.849 33 H 0.115 0.885 34 H 0.103 0.897 35 H 0.122 0.878 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -17.898 7.380 -1.261 19.400 hybrid contribution 1.276 0.068 -0.245 1.301 sum -16.621 7.448 -1.507 18.276 Atomic orbital electron populations 1.21818 0.90624 1.04212 1.03510 1.22769 0.96487 0.80347 1.01931 1.86200 1.16402 1.31695 1.87880 1.20213 0.84298 0.90657 0.93205 1.21288 0.95737 0.95851 1.07207 1.21810 0.91749 0.99676 0.92272 1.19822 0.93459 0.94708 1.04868 1.18461 0.90150 0.93875 0.99071 1.20951 0.94378 0.95945 1.11690 1.20965 0.93927 0.97744 0.97282 1.21262 0.98511 0.93341 1.13685 1.17780 0.92662 0.92654 0.89848 1.19465 0.99745 0.98403 1.34232 0.92704 1.26817 0.94267 0.98245 0.97375 1.69736 1.05523 1.35251 1.37472 0.85486 0.79329 0.78207 0.78086 1.18105 1.20651 1.17609 1.21247 0.92916 0.97184 1.11421 1.22628 0.88783 0.97570 0.93390 1.67257 1.06422 1.33926 1.19966 0.91348 0.91344 0.88446 0.92366 0.92373 0.81167 0.81098 0.84188 0.84852 0.88543 0.89681 0.87814 0.82485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 10.28 71.98 0.74 -1.27 16 2 C 0.06 1.27 6.02 71.98 0.43 1.70 16 3 O -0.31 -8.03 10.11 -89.68 -0.91 -8.94 16 4 C 0.29 8.43 7.49 84.81 0.64 9.06 16 5 C -0.18 -4.36 10.03 22.43 0.22 -4.13 16 6 C -0.03 -0.78 9.52 22.65 0.22 -0.57 16 7 C -0.13 -4.15 5.89 -19.94 -0.12 -4.27 16 8 C -0.01 -0.57 5.87 -20.09 -0.12 -0.69 16 9 C -0.21 -7.43 9.45 22.67 0.21 -7.21 16 10 C -0.08 -3.10 10.01 22.18 0.22 -2.88 16 11 C -0.25 -11.46 7.17 22.76 0.16 -11.30 16 12 C 0.07 3.69 5.10 -21.32 -0.11 3.58 16 13 C -0.49 -27.57 9.57 23.47 0.22 -27.34 16 14 H 0.05 3.33 8.06 -2.91 -0.02 3.31 16 15 C 0.05 2.53 5.40 85.25 0.46 2.99 16 16 N -0.85 -47.31 13.93 21.82 0.30 -47.00 16 17 Si 0.97 42.77 24.52 68.60 1.68 44.45 16 18 H -0.26 -10.60 6.71 99.48 0.67 -9.93 16 19 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 20 H -0.25 -11.37 6.86 99.48 0.68 -10.68 16 21 C -0.21 -9.48 9.18 22.95 0.21 -9.27 16 22 C 0.13 4.42 10.59 84.92 0.90 5.32 16 23 N -0.55 -17.73 9.19 -308.07 -2.83 -20.56 16 24 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 25 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 27 H 0.06 1.30 8.10 -2.39 -0.02 1.28 16 28 H 0.06 1.30 8.10 -2.39 -0.02 1.28 16 29 H 0.17 2.96 8.06 -2.91 -0.02 2.93 16 30 H 0.17 3.35 6.30 -2.91 -0.02 3.33 16 31 H 0.14 3.73 6.24 -2.91 -0.02 3.71 16 32 H 0.13 4.09 8.06 -2.91 -0.02 4.07 16 33 H 0.10 4.46 4.72 -2.91 -0.01 4.45 16 34 H 0.29 14.57 8.30 -92.71 -0.77 13.80 16 35 H 0.10 4.58 6.21 -2.91 -0.02 4.56 16 36 H 0.16 5.32 6.21 -2.91 -0.02 5.30 16 Total: -1.00 -62.77 302.78 3.58 -59.19 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 1.03 Total: 19.13 kcal Atomic # 6 Polarization: -50.56 SS G_CDS: 4.30 Total: -46.26 kcal Atomic # 7 Polarization: -65.04 SS G_CDS: -2.53 Total: -67.57 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: -0.91 Total: -8.94 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.68 Total: 44.45 kcal Total: -62.77 3.58 -59.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241704254.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.879 kcal (2) G-P(sol) polarization free energy of solvation -62.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds