Wall clock time and date at job start Mon Mar 30 2020 01:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86798 * 119.99594 * 2 1 4 4 H 1.48499 * 109.47488 * 264.99275 * 3 2 1 5 5 H 1.48499 * 109.47437 * 24.99224 * 3 2 1 6 6 H 1.48500 * 109.47174 * 144.99406 * 3 2 1 7 7 C 1.40005 * 120.00222 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00064 * 187.25275 * 7 2 1 9 9 C 1.41355 * 120.00152 * 7.25670 * 7 2 1 10 10 C 1.40682 * 119.76600 * 187.29736 * 9 7 2 11 11 C 1.38300 * 119.19221 * 179.97438 * 10 9 7 12 12 C 1.38674 * 118.69543 * 0.02562 * 11 10 9 13 13 C 1.39940 * 119.47029 * 359.97438 * 12 11 10 14 14 C 1.48257 * 119.61505 * 180.02562 * 13 12 11 15 15 C 1.40950 * 126.24968 * 0.05521 * 14 13 12 16 16 N 1.30624 * 108.06754 * 179.97438 * 15 14 13 17 17 N 1.40003 * 108.56024 * 0.02562 * 16 15 14 18 18 C 1.46501 * 125.86098 * 179.97438 * 17 16 15 19 19 C 1.53778 * 113.61227 * 194.10803 * 18 17 16 20 20 C 1.53955 * 87.02181 * 220.05140 * 19 18 17 21 21 C 1.53781 * 87.11008 * 25.36215 * 20 19 18 22 22 C 1.34668 * 108.26881 * 359.72723 * 17 16 15 23 23 N 1.32256 * 120.77375 * 0.27302 * 13 12 11 24 24 H 0.97002 * 120.00642 * 359.97438 * 1 2 3 25 25 H 1.07995 * 120.40566 * 359.97438 * 10 9 7 26 26 H 1.07994 * 120.65176 * 179.97438 * 11 10 9 27 27 H 1.08003 * 120.26644 * 179.97438 * 12 11 10 28 28 H 1.08000 * 125.96654 * 0.02562 * 15 14 13 29 29 H 1.09000 * 112.85429 * 325.30650 * 18 17 16 30 30 H 1.08999 * 113.61690 * 334.56887 * 19 18 17 31 31 H 1.09003 * 113.61691 * 105.47075 * 19 18 17 32 32 H 1.09002 * 113.53485 * 270.81160 * 20 19 18 33 33 H 1.08999 * 113.74881 * 139.94443 * 20 19 18 34 34 H 1.09002 * 113.61328 * 220.08594 * 21 20 19 35 35 H 1.09005 * 113.61315 * 89.18902 * 21 20 19 36 36 H 1.07994 * 126.19841 * 180.27152 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.5947 1.9855 -1.3947 5 1 1.3899 2.6809 0.5915 6 1 3.4820 1.4732 0.8032 7 6 2.0076 -1.2125 -0.0005 8 1 3.0811 -1.2162 0.1175 9 6 1.3094 -2.4317 -0.1557 10 6 1.9923 -3.6520 -0.0023 11 6 1.2974 -4.8379 -0.1562 12 6 -0.0549 -4.7828 -0.4584 13 6 -0.6788 -3.5381 -0.5987 14 6 -2.1246 -3.4755 -0.9212 15 6 -2.9846 -4.5760 -1.1109 16 7 -4.1779 -4.1164 -1.3773 17 7 -4.1286 -2.7172 -1.3692 18 6 -5.2565 -1.8172 -1.6225 19 6 -4.8361 -0.3613 -1.8836 20 6 -6.0516 0.0572 -1.0364 21 6 -5.9396 -1.3101 -0.3414 22 6 -2.8676 -2.3409 -1.0832 23 7 0.0071 -2.4169 -0.4517 24 1 -0.4851 0.8400 0.0004 25 1 3.0463 -3.6628 0.2328 26 1 1.7983 -5.7880 -0.0440 27 1 -0.6220 -5.6933 -0.5845 28 1 -2.7058 -5.6174 -1.0464 29 1 -5.9535 -2.2099 -2.3628 30 1 -3.8789 -0.0959 -1.4348 31 1 -4.9101 -0.0664 -2.9304 32 1 -6.9660 0.1782 -1.6171 33 1 -5.8558 0.9007 -0.3745 34 1 -6.9032 -1.7802 -0.1449 35 1 -5.2846 -1.3047 0.5299 36 1 -2.5084 -1.3259 -0.9995 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241719720.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:35 Heat of formation + Delta-G solvation = 126.884989 kcal Electronic energy + Delta-G solvation = -19681.328003 eV Core-core repulsion = 16746.583567 eV Total energy + Delta-G solvation = -2934.744436 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.81988 -38.44476 -37.75036 -33.64274 -31.62499 -30.88745 -30.16038 -28.34660 -25.95080 -25.75410 -24.75562 -22.18356 -21.56487 -20.48447 -19.69164 -18.82318 -17.60611 -16.66141 -15.70307 -15.28104 -14.68298 -14.41048 -14.18155 -13.99654 -13.79587 -13.10934 -12.70841 -12.52955 -12.39940 -12.05803 -11.94519 -11.52995 -11.33754 -11.22311 -11.04091 -10.73450 -10.70231 -10.65882 -10.49132 -10.22279 -9.79525 -9.39262 -8.86651 -8.64758 -7.96095 -7.54032 -6.93209 -6.44810 -4.47421 2.27434 2.66857 2.91886 2.94584 3.08018 3.11039 3.23112 3.82977 3.95040 4.27922 4.43693 4.67584 4.72917 4.84201 5.19269 5.43766 5.52970 5.58903 5.69407 5.76813 5.80424 5.83855 5.92454 6.01037 6.14962 6.21000 6.30721 6.54926 6.65452 6.81506 7.02729 7.10889 7.22019 7.40629 7.56895 7.67742 7.81261 8.09871 8.22764 8.30897 8.70869 8.96831 10.12460 10.32511 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.014958 B = 0.006799 C = 0.004777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.407457 B = 4117.382946 C = 5859.804030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.726 5.726 2 C 0.076 3.924 3 Si 0.904 3.096 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.438 4.438 8 H 0.082 0.918 9 C 0.265 3.735 10 C -0.282 4.282 11 C -0.057 4.057 12 C -0.304 4.304 13 C 0.223 3.777 14 C -0.176 4.176 15 C 0.062 3.938 16 N -0.318 5.318 17 N -0.372 5.372 18 C 0.140 3.860 19 C -0.148 4.148 20 C -0.137 4.137 21 C -0.148 4.148 22 C 0.098 3.902 23 N -0.482 5.482 24 H 0.270 0.730 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.179 0.821 29 H 0.115 0.885 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.501 1.421 -2.089 9.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.348 5.348 2 C -0.148 4.148 3 Si 0.729 3.271 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.469 4.469 8 H 0.100 0.900 9 C 0.139 3.861 10 C -0.305 4.305 11 C -0.081 4.081 12 C -0.327 4.327 13 C 0.078 3.922 14 C -0.187 4.187 15 C -0.125 4.125 16 N -0.138 5.138 17 N -0.154 5.154 18 C 0.038 3.962 19 C -0.186 4.186 20 C -0.175 4.175 21 C -0.187 4.187 22 C -0.049 4.049 23 N -0.195 5.195 24 H 0.081 0.919 25 H 0.115 0.885 26 H 0.113 0.887 27 H 0.112 0.888 28 H 0.196 0.804 29 H 0.133 0.867 30 H 0.119 0.881 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.109 0.891 36 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -11.390 2.166 -2.467 11.854 hybrid contribution 1.768 -0.011 0.325 1.798 sum -9.622 2.155 -2.142 10.090 Atomic orbital electron populations 1.70060 1.07276 1.27475 1.29947 1.25965 0.94803 1.00837 0.93185 0.86399 0.80449 0.80889 0.79374 1.19372 1.20313 1.18686 1.19527 0.94766 0.89594 1.43036 0.89968 1.18463 0.87930 0.91879 0.87812 1.21737 0.99601 0.93632 1.15527 1.20760 0.93998 0.96593 0.96755 1.21092 0.95577 0.96694 1.19336 1.18988 0.90152 0.89738 0.93349 1.18849 0.94018 0.91308 1.14559 1.23889 0.89907 0.99789 0.98911 1.77047 1.22149 0.88564 1.26023 1.48408 1.07666 1.04321 1.54980 1.22821 0.87192 0.87402 0.98795 1.23474 1.00304 0.93137 1.01705 1.22718 0.98151 0.97487 0.99164 1.23441 1.01381 0.96204 0.97643 1.22753 0.83285 1.01334 0.97527 1.68657 1.07646 1.25804 1.17368 0.91909 0.88500 0.88672 0.88768 0.80384 0.86671 0.88110 0.90189 0.89738 0.90270 0.90666 0.89148 0.79658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -18.39 11.57 55.55 0.64 -17.75 16 2 C 0.08 1.90 5.47 -17.35 -0.09 1.81 16 3 Si 0.90 18.30 29.57 -169.99 -5.03 13.27 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 7 C -0.44 -11.62 9.13 -37.73 -0.34 -11.96 16 8 H 0.08 2.06 7.86 -52.48 -0.41 1.64 16 9 C 0.27 7.26 6.52 -85.01 -0.55 6.70 16 10 C -0.28 -7.03 9.83 -38.64 -0.38 -7.41 16 11 C -0.06 -1.30 10.15 -39.40 -0.40 -1.70 16 12 C -0.30 -6.98 9.63 -38.78 -0.37 -7.36 16 13 C 0.22 5.52 6.76 -82.93 -0.56 4.96 16 14 C -0.18 -3.83 6.06 -105.35 -0.64 -4.47 16 15 C 0.06 1.19 11.41 -17.04 -0.19 1.00 16 16 N -0.32 -5.98 12.53 30.82 0.39 -5.59 16 17 N -0.37 -6.52 3.79 -53.81 -0.20 -6.72 16 18 C 0.14 1.84 5.01 -67.12 -0.34 1.50 16 19 C -0.15 -1.69 7.45 -25.83 -0.19 -1.88 16 20 C -0.14 -1.28 8.09 -25.83 -0.21 -1.49 16 21 C -0.15 -1.69 7.88 -25.92 -0.20 -1.90 16 22 C 0.10 1.95 10.39 -16.90 -0.18 1.78 16 23 N -0.48 -13.07 7.67 -7.68 -0.06 -13.13 16 24 H 0.27 6.15 8.29 -40.82 -0.34 5.81 16 25 H 0.10 2.23 8.06 -52.49 -0.42 1.80 16 26 H 0.10 1.85 8.06 -52.49 -0.42 1.42 16 27 H 0.09 1.89 7.02 -52.48 -0.37 1.52 16 28 H 0.18 2.89 7.32 -52.49 -0.38 2.51 16 29 H 0.12 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.10 1.33 6.30 -51.93 -0.33 1.00 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.19 3.80 6.68 -52.49 -0.35 3.45 16 LS Contribution 308.65 15.07 4.65 4.65 Total: -1.00 -29.90 308.65 -8.62 -38.52 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -4.36 Total: 7.15 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -4.66 Total: -20.41 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: 0.77 Total: -43.18 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.27 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.90 -8.62 -38.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241719720.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.407 kcal (2) G-P(sol) polarization free energy of solvation -29.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds