Wall clock time and date at job start Mon Mar 30 2020 01:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86798 * 119.99594 * 2 1 4 4 H 1.48499 * 109.47488 * 264.99275 * 3 2 1 5 5 H 1.48499 * 109.47437 * 24.99224 * 3 2 1 6 6 H 1.48500 * 109.47174 * 144.99406 * 3 2 1 7 7 C 1.40005 * 120.00222 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00064 * 187.25275 * 7 2 1 9 9 C 1.41355 * 120.00152 * 7.25670 * 7 2 1 10 10 C 1.40682 * 119.76600 * 187.29736 * 9 7 2 11 11 C 1.38300 * 119.19221 * 179.97438 * 10 9 7 12 12 C 1.38674 * 118.69543 * 0.02562 * 11 10 9 13 13 C 1.39940 * 119.47029 * 359.97438 * 12 11 10 14 14 C 1.48257 * 119.61505 * 180.02562 * 13 12 11 15 15 C 1.40950 * 126.24968 * 0.05521 * 14 13 12 16 16 N 1.30624 * 108.06754 * 179.97438 * 15 14 13 17 17 N 1.40003 * 108.56024 * 0.02562 * 16 15 14 18 18 C 1.46501 * 125.86098 * 179.97438 * 17 16 15 19 19 C 1.53778 * 113.61227 * 194.10803 * 18 17 16 20 20 C 1.53955 * 87.02181 * 220.05140 * 19 18 17 21 21 C 1.53781 * 87.11008 * 25.36215 * 20 19 18 22 22 C 1.34668 * 108.26881 * 359.72723 * 17 16 15 23 23 N 1.32256 * 120.77375 * 0.27302 * 13 12 11 24 24 H 0.97002 * 120.00642 * 359.97438 * 1 2 3 25 25 H 1.07995 * 120.40566 * 359.97438 * 10 9 7 26 26 H 1.07994 * 120.65176 * 179.97438 * 11 10 9 27 27 H 1.08003 * 120.26644 * 179.97438 * 12 11 10 28 28 H 1.08000 * 125.96654 * 0.02562 * 15 14 13 29 29 H 1.09000 * 112.85429 * 325.30650 * 18 17 16 30 30 H 1.08999 * 113.61690 * 334.56887 * 19 18 17 31 31 H 1.09003 * 113.61691 * 105.47075 * 19 18 17 32 32 H 1.09002 * 113.53485 * 270.81160 * 20 19 18 33 33 H 1.08999 * 113.74881 * 139.94443 * 20 19 18 34 34 H 1.09002 * 113.61328 * 220.08594 * 21 20 19 35 35 H 1.09005 * 113.61315 * 89.18902 * 21 20 19 36 36 H 1.07994 * 126.19841 * 180.27152 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.5947 1.9855 -1.3947 5 1 1.3899 2.6809 0.5915 6 1 3.4820 1.4732 0.8032 7 6 2.0076 -1.2125 -0.0005 8 1 3.0811 -1.2162 0.1175 9 6 1.3094 -2.4317 -0.1557 10 6 1.9923 -3.6520 -0.0023 11 6 1.2974 -4.8379 -0.1562 12 6 -0.0549 -4.7828 -0.4584 13 6 -0.6788 -3.5381 -0.5987 14 6 -2.1246 -3.4755 -0.9212 15 6 -2.9846 -4.5760 -1.1109 16 7 -4.1779 -4.1164 -1.3773 17 7 -4.1286 -2.7172 -1.3692 18 6 -5.2565 -1.8172 -1.6225 19 6 -4.8361 -0.3613 -1.8836 20 6 -6.0516 0.0572 -1.0364 21 6 -5.9396 -1.3101 -0.3414 22 6 -2.8676 -2.3409 -1.0832 23 7 0.0071 -2.4169 -0.4517 24 1 -0.4851 0.8400 0.0004 25 1 3.0463 -3.6628 0.2328 26 1 1.7983 -5.7880 -0.0440 27 1 -0.6220 -5.6933 -0.5845 28 1 -2.7058 -5.6174 -1.0464 29 1 -5.9535 -2.2099 -2.3628 30 1 -3.8789 -0.0959 -1.4348 31 1 -4.9101 -0.0664 -2.9304 32 1 -6.9660 0.1782 -1.6171 33 1 -5.8558 0.9007 -0.3745 34 1 -6.9032 -1.7802 -0.1449 35 1 -5.2846 -1.3047 0.5299 36 1 -2.5084 -1.3259 -0.9995 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241719720.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:34 Heat of formation + Delta-G solvation = 110.762337 kcal Electronic energy + Delta-G solvation = -19682.027133 eV Core-core repulsion = 16746.583567 eV Total energy + Delta-G solvation = -2935.443567 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.24449 -39.88772 -39.20915 -35.50188 -33.24232 -32.50457 -31.92441 -30.01073 -27.65396 -26.73542 -26.06475 -23.81788 -23.32448 -21.86422 -21.24395 -20.05969 -19.31663 -18.22861 -16.99597 -16.70133 -16.34565 -15.97926 -15.79241 -15.61004 -15.25610 -14.49481 -14.12405 -14.03657 -13.84721 -13.41313 -13.32064 -13.05251 -12.89412 -12.73134 -12.59926 -12.29481 -12.26111 -11.88428 -11.62992 -11.57612 -11.38284 -11.19697 -10.43255 -10.25359 -9.82807 -9.43264 -8.67288 -8.29267 -6.43493 0.57408 1.06574 1.20658 1.42055 1.53392 1.54934 1.59923 2.12833 2.25397 2.97379 3.25542 3.50640 3.74772 3.81355 3.93019 3.99320 4.07474 4.20502 4.43539 4.55915 4.59102 4.67857 4.75225 4.82683 4.91948 4.93865 4.99725 5.00851 5.02393 5.19798 5.33001 5.41051 5.51883 5.71115 5.79025 5.95128 6.15430 6.24494 6.35081 6.76026 6.81635 7.03639 8.23729 8.49593 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.014958 B = 0.006799 C = 0.004777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.407457 B = 4117.382946 C = 5859.804030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.754 5.754 2 C 0.032 3.968 3 Si 0.982 3.018 4 H -0.266 1.266 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.475 4.475 8 H 0.084 0.916 9 C 0.230 3.770 10 C -0.307 4.307 11 C -0.054 4.054 12 C -0.306 4.306 13 C 0.203 3.797 14 C -0.210 4.210 15 C 0.066 3.934 16 N -0.321 5.321 17 N -0.361 5.361 18 C 0.121 3.879 19 C -0.149 4.149 20 C -0.117 4.117 21 C -0.146 4.146 22 C 0.099 3.901 23 N -0.510 5.510 24 H 0.278 0.722 25 H 0.106 0.894 26 H 0.133 0.867 27 H 0.126 0.874 28 H 0.205 0.795 29 H 0.136 0.864 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.114 0.886 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.891 1.664 -2.533 11.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C -0.189 4.189 3 Si 0.802 3.198 4 H -0.190 1.190 5 H -0.191 1.191 6 H -0.183 1.183 7 C -0.506 4.506 8 H 0.102 0.898 9 C 0.104 3.896 10 C -0.330 4.330 11 C -0.078 4.078 12 C -0.329 4.329 13 C 0.059 3.941 14 C -0.222 4.222 15 C -0.121 4.121 16 N -0.141 5.141 17 N -0.142 5.142 18 C 0.020 3.980 19 C -0.188 4.188 20 C -0.155 4.155 21 C -0.185 4.185 22 C -0.050 4.050 23 N -0.224 5.224 24 H 0.089 0.911 25 H 0.124 0.876 26 H 0.151 0.849 27 H 0.144 0.856 28 H 0.222 0.778 29 H 0.154 0.846 30 H 0.094 0.906 31 H 0.114 0.886 32 H 0.132 0.868 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.084 0.916 36 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -12.815 2.392 -2.914 13.358 hybrid contribution 2.084 -0.159 0.442 2.136 sum -10.732 2.233 -2.471 11.237 Atomic orbital electron populations 1.70137 1.08675 1.28907 1.29917 1.26824 0.95710 1.04030 0.92361 0.85236 0.79037 0.76096 0.79384 1.19045 1.19096 1.18258 1.19857 0.95150 0.90724 1.44882 0.89770 1.18949 0.88685 0.93257 0.88700 1.21931 1.00310 0.93936 1.16805 1.21178 0.94079 0.97464 0.95127 1.21496 0.96003 0.97338 1.18052 1.19553 0.91566 0.90062 0.92941 1.18958 0.93321 0.93031 1.16906 1.24194 0.89196 1.00423 0.98259 1.77008 1.21979 0.89214 1.25927 1.48779 1.07782 1.04365 1.53307 1.23466 0.86545 0.87425 1.00535 1.23473 1.00238 0.92114 1.02975 1.22714 0.98128 0.96234 0.98418 1.23398 1.01327 0.97763 0.96010 1.22584 0.84444 1.00606 0.97365 1.68627 1.07873 1.27321 1.18585 0.91111 0.87606 0.84881 0.85588 0.77798 0.84627 0.90552 0.88617 0.86780 0.89744 0.88954 0.91561 0.80837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.49 11.57 21.83 0.25 -39.24 16 2 C 0.03 1.65 5.47 85.28 0.47 2.12 16 3 Si 0.98 38.05 29.57 68.60 2.03 40.08 16 4 H -0.27 -10.07 7.11 99.48 0.71 -9.37 16 5 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 6 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 7 C -0.47 -26.14 9.13 23.47 0.21 -25.93 16 8 H 0.08 4.38 7.86 -2.91 -0.02 4.35 16 9 C 0.23 13.07 6.52 40.25 0.26 13.33 16 10 C -0.31 -15.60 9.83 22.88 0.22 -15.37 16 11 C -0.05 -2.44 10.15 22.39 0.23 -2.22 16 12 C -0.31 -13.87 9.63 22.79 0.22 -13.65 16 13 C 0.20 10.26 6.76 42.16 0.28 10.54 16 14 C -0.21 -9.27 6.06 -20.33 -0.12 -9.39 16 15 C 0.07 2.46 11.41 85.54 0.98 3.44 16 16 N -0.32 -11.68 12.53 -56.41 -0.71 -12.39 16 17 N -0.36 -12.48 3.79 -324.17 -1.23 -13.71 16 18 C 0.12 2.99 5.01 45.52 0.23 3.22 16 19 C -0.15 -3.24 7.45 31.18 0.23 -3.00 16 20 C -0.12 -1.89 8.09 31.18 0.25 -1.64 16 21 C -0.15 -3.11 7.88 31.12 0.25 -2.87 16 22 C 0.10 4.05 10.39 83.87 0.87 4.92 16 23 N -0.51 -28.73 7.67 -178.20 -1.37 -30.09 16 24 H 0.28 13.02 8.29 -92.71 -0.77 12.25 16 25 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 26 H 0.13 4.84 8.06 -2.91 -0.02 4.81 16 27 H 0.13 4.77 7.02 -2.91 -0.02 4.75 16 28 H 0.21 6.19 7.32 -2.91 -0.02 6.17 16 29 H 0.14 2.82 8.14 -2.39 -0.02 2.80 16 30 H 0.08 2.06 6.30 -2.39 -0.02 2.04 16 31 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.11 1.23 8.14 -2.39 -0.02 1.22 16 33 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 36 H 0.17 7.53 6.68 -2.91 -0.02 7.51 16 Total: -1.00 -66.68 308.65 4.65 -62.03 By element: Atomic # 1 Polarization: 28.73 SS G_CDS: 1.09 Total: 29.82 kcal Atomic # 6 Polarization: -41.08 SS G_CDS: 4.58 Total: -36.50 kcal Atomic # 7 Polarization: -92.38 SS G_CDS: -3.05 Total: -95.43 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 2.03 Total: 40.08 kcal Total: -66.68 4.65 -62.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241719720.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.795 kcal (2) G-P(sol) polarization free energy of solvation -66.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds