Wall clock time and date at job start Mon Mar 30 2020 01:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86796 * 119.99825 * 2 1 4 4 H 1.48499 * 109.47127 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47310 * 299.99710 * 3 2 1 6 6 H 1.48495 * 109.47318 * 59.99691 * 3 2 1 7 7 C 1.40031 * 120.00235 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00366 * 163.16174 * 7 2 1 9 9 C 1.41543 * 119.99974 * 343.16272 * 7 2 1 10 10 C 1.41167 * 120.98657 * 336.10411 * 9 7 2 11 11 C 1.37671 * 119.08476 * 180.02562 * 10 9 7 12 12 N 1.31972 * 121.15809 * 359.73467 * 11 10 9 13 13 C 1.32784 * 122.19999 * 0.53913 * 12 11 10 14 14 C 1.48348 * 119.62008 * 179.74480 * 13 12 11 15 15 C 1.40904 * 126.24104 * 184.70079 * 14 13 12 16 16 N 1.30646 * 108.07963 * 180.30048 * 15 14 13 17 17 N 1.40005 * 108.54185 * 359.58158 * 16 15 14 18 18 C 1.46496 * 125.87639 * 180.17211 * 17 16 15 19 19 C 1.53783 * 113.61556 * 194.42740 * 18 17 16 20 20 C 1.53959 * 87.02114 * 220.05284 * 19 18 17 21 21 C 1.53782 * 87.10838 * 25.36408 * 20 19 18 22 22 C 1.34728 * 108.24273 * 0.42447 * 17 16 15 23 23 C 1.38949 * 120.76315 * 359.46599 * 13 12 11 24 24 H 0.96997 * 120.00601 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.45542 * 359.97438 * 10 9 7 26 26 H 1.07999 * 119.41940 * 179.97438 * 11 10 9 27 27 H 1.08003 * 125.95887 * 0.02861 * 15 14 13 28 28 H 1.08997 * 112.85252 * 325.62953 * 18 17 16 29 29 H 1.09000 * 113.61170 * 334.57165 * 19 18 17 30 30 H 1.08996 * 113.61429 * 105.47407 * 19 18 17 31 31 H 1.08995 * 113.53532 * 270.81179 * 20 19 18 32 32 H 1.08994 * 113.73981 * 139.94303 * 20 19 18 33 33 H 1.09001 * 113.60802 * 220.09200 * 21 20 19 34 34 H 1.08996 * 113.61471 * 89.19101 * 21 20 19 35 35 H 1.08000 * 126.19020 * 179.76638 * 22 17 16 36 36 H 1.07998 * 120.61984 * 180.28384 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.7013 1.3464 0.0006 5 1 1.8826 2.3964 -1.2125 6 1 1.8825 2.3965 1.2124 7 6 2.0076 -1.2127 0.0005 8 1 3.0528 -1.2329 -0.2704 9 6 1.3454 -2.4121 0.3561 10 6 0.1906 -2.3916 1.1679 11 6 -0.4220 -3.5816 1.4903 12 7 0.0487 -4.7332 1.0499 13 6 1.1337 -4.8093 0.2882 14 6 1.6161 -6.1351 -0.1704 15 6 2.7952 -6.3858 -0.8999 16 7 2.8701 -7.6714 -1.1201 17 7 1.7569 -8.2885 -0.5370 18 6 1.4645 -9.7239 -0.5532 19 6 0.0205 -10.0631 -0.1470 20 6 0.6044 -11.2586 0.6276 21 6 1.9145 -10.4586 0.7206 22 6 0.9981 -7.3345 0.0368 23 6 1.8193 -3.6610 -0.0890 24 1 -0.4851 0.8400 -0.0004 25 1 -0.2062 -1.4553 1.5317 26 1 -1.3055 -3.5722 2.1113 27 1 3.5099 -5.6440 -1.2246 28 1 1.7848 -10.2108 -1.4743 29 1 -0.4409 -9.3113 0.4933 30 1 -0.6125 -10.3523 -0.9859 31 1 0.6883 -12.1658 0.0292 32 1 0.1285 -11.4308 1.5929 33 1 2.8082 -11.0668 0.5811 34 1 1.9718 -9.8153 1.5986 35 1 0.0693 -7.4906 0.5653 36 1 2.6989 -3.7253 -0.7123 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241720625.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:30 Heat of formation + Delta-G solvation = 117.034773 kcal Electronic energy + Delta-G solvation = -19129.256205 eV Core-core repulsion = 16194.084632 eV Total energy + Delta-G solvation = -2935.171573 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.98207 -38.60777 -37.89495 -34.11459 -31.71622 -30.81966 -30.46618 -28.07203 -25.99002 -25.95655 -25.03789 -22.21139 -21.79579 -20.46995 -19.96772 -19.00171 -17.78179 -16.63019 -15.85930 -15.42923 -14.64120 -14.40885 -14.32060 -14.25013 -13.83152 -13.25040 -12.88665 -12.67284 -12.49062 -12.27829 -12.09194 -11.97530 -11.49444 -11.39675 -11.14495 -10.92615 -10.84729 -10.78645 -10.37927 -10.22277 -9.75921 -9.40883 -9.01979 -8.65665 -8.00649 -7.93273 -6.95556 -6.78596 -4.55976 2.11329 2.61902 2.76333 2.77279 3.04288 3.09866 3.19708 3.74899 3.87984 4.11161 4.27245 4.52369 4.56931 4.72848 5.05903 5.23477 5.38016 5.41415 5.47894 5.58251 5.63539 5.67087 5.68925 5.76024 6.04067 6.09518 6.31552 6.37531 6.84217 6.93964 6.98709 7.08289 7.16980 7.39083 7.44866 7.54132 7.90655 8.08686 8.18956 8.50106 8.78126 8.79308 9.64857 10.09908 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.043045 B = 0.003738 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.321969 B = 7489.215018 C = 7963.902425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.078 3.922 3 Si 0.910 3.090 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.457 4.457 8 H 0.082 0.918 9 C 0.130 3.870 10 C -0.216 4.216 11 C 0.088 3.912 12 N -0.574 5.574 13 C 0.198 3.802 14 C -0.166 4.166 15 C 0.065 3.935 16 N -0.311 5.311 17 N -0.371 5.371 18 C 0.140 3.860 19 C -0.147 4.147 20 C -0.137 4.137 21 C -0.149 4.149 22 C 0.077 3.923 23 C -0.259 4.259 24 H 0.282 0.718 25 H 0.125 0.875 26 H 0.120 0.880 27 H 0.183 0.817 28 H 0.117 0.883 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.175 0.825 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.404 -13.866 0.566 13.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.141 4.141 3 Si 0.734 3.266 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.488 4.488 8 H 0.100 0.900 9 C 0.122 3.878 10 C -0.239 4.239 11 C -0.064 4.064 12 N -0.289 5.289 13 C 0.064 3.936 14 C -0.178 4.178 15 C -0.122 4.122 16 N -0.131 5.131 17 N -0.153 5.153 18 C 0.038 3.962 19 C -0.186 4.186 20 C -0.175 4.175 21 C -0.187 4.187 22 C -0.069 4.069 23 C -0.282 4.282 24 H 0.093 0.907 25 H 0.142 0.858 26 H 0.137 0.863 27 H 0.200 0.800 28 H 0.135 0.865 29 H 0.114 0.886 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.192 0.808 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.404 -15.564 0.251 15.571 hybrid contribution 0.220 2.417 0.064 2.428 sum 0.624 -13.147 0.315 13.165 Atomic orbital electron populations 1.69781 1.07716 1.29378 1.34369 1.25955 0.94740 1.01502 0.91938 0.86225 0.81040 0.80664 0.78623 1.18258 1.19897 1.19620 1.19628 0.97901 0.90806 1.40480 0.90032 1.17749 0.90613 0.92015 0.87417 1.22193 1.00538 0.98075 1.03055 1.21891 0.98015 0.88551 0.97960 1.67259 1.14980 1.29194 1.17497 1.18383 0.91719 0.89338 0.94209 1.18868 0.97647 0.92601 1.08642 1.23965 0.97610 0.92974 0.97674 1.77113 1.06788 1.08108 1.21054 1.48404 1.17875 1.06042 1.42952 1.22837 0.96988 0.76536 0.99864 1.23460 0.95107 0.98808 1.01216 1.22725 0.96638 0.96887 1.01272 1.23446 0.98395 0.98804 0.98064 1.22428 0.97881 0.87840 0.98746 1.21714 1.04801 0.92749 1.08983 0.90720 0.85773 0.86288 0.79974 0.86496 0.88555 0.90046 0.89577 0.90282 0.90499 0.89224 0.80755 0.88096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.91 10.92 55.55 0.61 -19.31 16 2 C 0.08 1.91 5.20 -17.35 -0.09 1.82 16 3 Si 0.91 18.22 29.59 -169.99 -5.03 13.19 16 4 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 5 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 6 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.46 -11.93 9.12 -37.65 -0.34 -12.28 16 8 H 0.08 2.04 7.90 -52.49 -0.41 1.63 16 9 C 0.13 3.46 5.60 -106.56 -0.60 2.86 16 10 C -0.22 -5.59 8.79 -38.68 -0.34 -5.93 16 11 C 0.09 2.10 11.15 -17.70 -0.20 1.91 16 12 N -0.57 -13.81 10.04 -9.94 -0.10 -13.91 16 13 C 0.20 4.70 6.75 -83.03 -0.56 4.14 16 14 C -0.17 -3.38 6.05 -105.35 -0.64 -4.02 16 15 C 0.06 1.21 11.40 -17.05 -0.19 1.01 16 16 N -0.31 -5.56 12.54 30.81 0.39 -5.17 16 17 N -0.37 -5.87 3.79 -53.82 -0.20 -6.07 16 18 C 0.14 1.59 5.02 -67.12 -0.34 1.25 16 19 C -0.15 -1.34 7.45 -25.82 -0.19 -1.53 16 20 C -0.14 -1.01 8.09 -25.82 -0.21 -1.22 16 21 C -0.15 -1.43 7.88 -25.92 -0.20 -1.63 16 22 C 0.08 1.35 10.40 -16.90 -0.18 1.18 16 23 C -0.26 -6.42 9.40 -38.35 -0.36 -6.78 16 24 H 0.28 6.43 8.29 -40.82 -0.34 6.09 16 25 H 0.12 3.26 6.20 -52.49 -0.33 2.93 16 26 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 27 H 0.18 3.01 7.35 -52.48 -0.39 2.62 16 28 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.10 0.95 6.30 -51.93 -0.33 0.62 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.18 2.79 6.68 -52.49 -0.35 2.44 16 36 H 0.10 2.30 7.05 -52.49 -0.37 1.93 16 LS Contribution 307.17 15.07 4.63 4.63 Total: -1.00 -29.73 307.17 -8.42 -38.14 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -4.27 Total: 7.70 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: -4.44 Total: -19.21 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: 0.69 Total: -44.46 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.03 Total: 13.19 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.73 -8.42 -38.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241720625.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.178 kcal (2) G-P(sol) polarization free energy of solvation -29.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds