Wall clock time and date at job start Mon Mar 30 2020 01:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86796 * 119.99825 * 2 1 4 4 H 1.48499 * 109.47127 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47310 * 299.99710 * 3 2 1 6 6 H 1.48495 * 109.47318 * 59.99691 * 3 2 1 7 7 C 1.40031 * 120.00235 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00366 * 163.16174 * 7 2 1 9 9 C 1.41543 * 119.99974 * 343.16272 * 7 2 1 10 10 C 1.41167 * 120.98657 * 336.10411 * 9 7 2 11 11 C 1.37671 * 119.08476 * 180.02562 * 10 9 7 12 12 N 1.31972 * 121.15809 * 359.73467 * 11 10 9 13 13 C 1.32784 * 122.19999 * 0.53913 * 12 11 10 14 14 C 1.48348 * 119.62008 * 179.74480 * 13 12 11 15 15 C 1.40904 * 126.24104 * 184.70079 * 14 13 12 16 16 N 1.30646 * 108.07963 * 180.30048 * 15 14 13 17 17 N 1.40005 * 108.54185 * 359.58158 * 16 15 14 18 18 C 1.46496 * 125.87639 * 180.17211 * 17 16 15 19 19 C 1.53783 * 113.61556 * 194.42740 * 18 17 16 20 20 C 1.53959 * 87.02114 * 220.05284 * 19 18 17 21 21 C 1.53782 * 87.10838 * 25.36408 * 20 19 18 22 22 C 1.34728 * 108.24273 * 0.42447 * 17 16 15 23 23 C 1.38949 * 120.76315 * 359.46599 * 13 12 11 24 24 H 0.96997 * 120.00601 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.45542 * 359.97438 * 10 9 7 26 26 H 1.07999 * 119.41940 * 179.97438 * 11 10 9 27 27 H 1.08003 * 125.95887 * 0.02861 * 15 14 13 28 28 H 1.08997 * 112.85252 * 325.62953 * 18 17 16 29 29 H 1.09000 * 113.61170 * 334.57165 * 19 18 17 30 30 H 1.08996 * 113.61429 * 105.47407 * 19 18 17 31 31 H 1.08995 * 113.53532 * 270.81179 * 20 19 18 32 32 H 1.08994 * 113.73981 * 139.94303 * 20 19 18 33 33 H 1.09001 * 113.60802 * 220.09200 * 21 20 19 34 34 H 1.08996 * 113.61471 * 89.19101 * 21 20 19 35 35 H 1.08000 * 126.19020 * 179.76638 * 22 17 16 36 36 H 1.07998 * 120.61984 * 180.28384 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.7013 1.3464 0.0006 5 1 1.8826 2.3964 -1.2125 6 1 1.8825 2.3965 1.2124 7 6 2.0076 -1.2127 0.0005 8 1 3.0528 -1.2329 -0.2704 9 6 1.3454 -2.4121 0.3561 10 6 0.1906 -2.3916 1.1679 11 6 -0.4220 -3.5816 1.4903 12 7 0.0487 -4.7332 1.0499 13 6 1.1337 -4.8093 0.2882 14 6 1.6161 -6.1351 -0.1704 15 6 2.7952 -6.3858 -0.8999 16 7 2.8701 -7.6714 -1.1201 17 7 1.7569 -8.2885 -0.5370 18 6 1.4645 -9.7239 -0.5532 19 6 0.0205 -10.0631 -0.1470 20 6 0.6044 -11.2586 0.6276 21 6 1.9145 -10.4586 0.7206 22 6 0.9981 -7.3345 0.0368 23 6 1.8193 -3.6610 -0.0890 24 1 -0.4851 0.8400 -0.0004 25 1 -0.2062 -1.4553 1.5317 26 1 -1.3055 -3.5722 2.1113 27 1 3.5099 -5.6440 -1.2246 28 1 1.7848 -10.2108 -1.4743 29 1 -0.4409 -9.3113 0.4933 30 1 -0.6125 -10.3523 -0.9859 31 1 0.6883 -12.1658 0.0292 32 1 0.1285 -11.4308 1.5929 33 1 2.8082 -11.0668 0.5811 34 1 1.9718 -9.8153 1.5986 35 1 0.0693 -7.4906 0.5653 36 1 2.6989 -3.7253 -0.7123 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241720625.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:30 Heat of formation + Delta-G solvation = 100.860405 kcal Electronic energy + Delta-G solvation = -19129.957578 eV Core-core repulsion = 16194.084632 eV Total energy + Delta-G solvation = -2935.872947 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.30224 -40.01658 -39.23397 -35.99501 -33.17432 -32.63334 -32.04781 -29.64952 -27.87169 -26.72137 -26.13028 -23.89871 -23.42148 -21.81170 -21.49078 -20.04827 -19.41570 -18.11178 -17.20613 -16.69471 -16.25181 -16.01499 -15.88718 -15.76734 -15.29022 -14.51461 -14.30863 -14.15388 -13.88260 -13.67684 -13.34095 -13.24503 -13.02805 -12.87636 -12.69023 -12.29742 -12.01670 -11.88515 -11.61147 -11.58156 -11.38463 -11.23635 -10.40507 -10.23313 -9.94473 -9.84720 -8.73484 -8.57221 -6.53519 0.52879 0.96523 1.05506 1.39954 1.52075 1.55612 1.57243 2.07507 2.20313 2.85378 3.25106 3.51718 3.74280 3.81338 3.82168 3.84404 3.91595 4.04707 4.46410 4.54783 4.59809 4.68102 4.77342 4.82298 4.95076 4.98043 5.00778 5.03558 5.05390 5.23298 5.27355 5.36460 5.48255 5.61414 5.67452 5.96479 6.10557 6.26430 6.56226 6.71241 6.84665 6.84916 7.74738 8.27298 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.043045 B = 0.003738 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.321969 B = 7489.215018 C = 7963.902425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.038 3.962 3 Si 0.987 3.013 4 H -0.257 1.257 5 H -0.265 1.265 6 H -0.262 1.262 7 C -0.490 4.490 8 H 0.081 0.919 9 C 0.103 3.897 10 C -0.242 4.242 11 C 0.088 3.912 12 N -0.579 5.579 13 C 0.202 3.798 14 C -0.208 4.208 15 C 0.061 3.939 16 N -0.320 5.320 17 N -0.358 5.358 18 C 0.117 3.883 19 C -0.145 4.145 20 C -0.119 4.119 21 C -0.148 4.148 22 C 0.096 3.904 23 C -0.282 4.282 24 H 0.292 0.708 25 H 0.114 0.886 26 H 0.148 0.852 27 H 0.193 0.807 28 H 0.131 0.869 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.191 0.809 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.282 -15.297 0.525 15.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.179 4.179 3 Si 0.807 3.193 4 H -0.181 1.181 5 H -0.189 1.189 6 H -0.187 1.187 7 C -0.521 4.521 8 H 0.099 0.901 9 C 0.096 3.904 10 C -0.265 4.265 11 C -0.064 4.064 12 N -0.294 5.294 13 C 0.067 3.933 14 C -0.220 4.220 15 C -0.126 4.126 16 N -0.141 5.141 17 N -0.139 5.139 18 C 0.017 3.983 19 C -0.184 4.184 20 C -0.156 4.156 21 C -0.187 4.187 22 C -0.053 4.053 23 C -0.305 4.305 24 H 0.103 0.897 25 H 0.132 0.868 26 H 0.165 0.835 27 H 0.210 0.790 28 H 0.148 0.852 29 H 0.106 0.894 30 H 0.114 0.886 31 H 0.127 0.873 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.208 0.792 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.287 -17.044 0.199 17.047 hybrid contribution 0.218 2.667 0.059 2.676 sum 0.504 -14.377 0.258 14.388 Atomic orbital electron populations 1.69821 1.09160 1.30961 1.34144 1.26840 0.95525 1.04697 0.90795 0.85082 0.79404 0.75712 0.79068 1.18067 1.18920 1.18675 1.19911 0.98200 0.91928 1.42015 0.90053 1.18143 0.91299 0.93061 0.87923 1.22177 1.01401 0.98382 1.04526 1.22313 0.98455 0.88056 0.97545 1.67383 1.15288 1.28887 1.17889 1.18807 0.90962 0.90633 0.92897 1.18848 0.99504 0.92147 1.11479 1.24115 0.97442 0.93544 0.97492 1.77079 1.07767 1.07758 1.21455 1.48847 1.16518 1.07506 1.41006 1.23529 0.99281 0.74004 1.01510 1.23496 0.93731 0.99318 1.01819 1.22712 0.94348 0.96691 1.01886 1.23431 1.00287 0.98761 0.96176 1.22584 0.97861 0.87419 0.97445 1.21894 1.05752 0.92856 1.10044 0.89724 0.86811 0.83459 0.79023 0.85170 0.89421 0.88570 0.87339 0.89234 0.89540 0.90872 0.79237 0.87256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.90 10.92 21.84 0.24 -41.66 16 2 C 0.04 1.90 5.20 85.29 0.44 2.35 16 3 Si 0.99 37.35 29.59 68.60 2.03 39.38 16 4 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 5 H -0.26 -9.56 7.11 99.48 0.71 -8.86 16 6 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 7 C -0.49 -26.36 9.12 23.52 0.21 -26.15 16 8 H 0.08 4.21 7.90 -2.91 -0.02 4.18 16 9 C 0.10 5.71 5.60 -21.12 -0.12 5.59 16 10 C -0.24 -12.93 8.79 22.86 0.20 -12.73 16 11 C 0.09 4.28 11.15 84.54 0.94 5.22 16 12 N -0.58 -28.00 10.04 -185.37 -1.86 -29.86 16 13 C 0.20 9.73 6.75 41.86 0.28 10.01 16 14 C -0.21 -8.48 6.05 -20.34 -0.12 -8.60 16 15 C 0.06 2.25 11.40 85.52 0.98 3.23 16 16 N -0.32 -11.19 12.54 -56.43 -0.71 -11.89 16 17 N -0.36 -10.82 3.79 -324.18 -1.23 -12.05 16 18 C 0.12 2.38 5.02 45.52 0.23 2.61 16 19 C -0.15 -2.21 7.45 31.18 0.23 -1.98 16 20 C -0.12 -1.32 8.09 31.18 0.25 -1.06 16 21 C -0.15 -2.48 7.88 31.12 0.25 -2.23 16 22 C 0.10 3.26 10.40 83.84 0.87 4.13 16 23 C -0.28 -14.49 9.40 23.07 0.22 -14.27 16 24 H 0.29 13.38 8.29 -92.71 -0.77 12.61 16 25 H 0.11 6.20 6.20 -2.91 -0.02 6.18 16 26 H 0.15 6.12 8.06 -2.91 -0.02 6.10 16 27 H 0.19 6.45 7.35 -2.91 -0.02 6.43 16 28 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.09 1.52 6.30 -2.39 -0.02 1.50 16 30 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.19 5.80 6.68 -2.91 -0.02 5.78 16 36 H 0.11 5.21 7.05 -2.91 -0.02 5.19 16 Total: -1.00 -65.07 307.17 4.43 -60.64 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: 1.09 Total: 29.34 kcal Atomic # 6 Polarization: -38.75 SS G_CDS: 4.86 Total: -33.89 kcal Atomic # 7 Polarization: -91.91 SS G_CDS: -3.56 Total: -95.47 kcal Atomic # 14 Polarization: 37.35 SS G_CDS: 2.03 Total: 39.38 kcal Total: -65.07 4.43 -60.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241720625.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.502 kcal (2) G-P(sol) polarization free energy of solvation -65.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds