Wall clock time and date at job start Mon Mar 30 2020 01:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86799 * 119.99996 * 2 1 4 4 H 1.48504 * 109.47126 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47162 * 299.99792 * 3 2 1 6 6 H 1.48505 * 109.47248 * 60.00285 * 3 2 1 7 7 C 1.39930 * 119.99708 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99866 * 163.64122 * 7 2 1 9 9 C 1.41432 * 120.00454 * 343.64612 * 7 2 1 10 10 C 1.40810 * 120.61041 * 155.73444 * 9 7 2 11 11 N 1.31481 * 120.65846 * 179.97438 * 10 9 7 12 12 C 1.31951 * 122.11339 * 359.75688 * 11 10 9 13 13 C 1.39647 * 121.15357 * 0.53657 * 12 11 10 14 14 C 1.48504 * 120.40409 * 179.71988 * 13 12 11 15 15 C 1.40833 * 126.21701 * 179.74751 * 14 13 12 16 16 N 1.30682 * 108.09581 * 179.97438 * 15 14 13 17 17 N 1.40012 * 108.51880 * 359.77153 * 16 15 14 18 18 C 1.46509 * 125.89148 * 180.24837 * 17 16 15 19 19 C 1.53778 * 113.61357 * 194.29938 * 18 17 16 20 20 C 1.53954 * 87.01938 * 220.05111 * 19 18 17 21 21 C 1.53778 * 87.11154 * 25.36298 * 20 19 18 22 22 C 1.34822 * 108.21258 * 0.38849 * 17 16 15 23 23 C 1.39118 * 119.18909 * 359.45504 * 13 12 11 24 24 H 0.97003 * 119.99832 * 0.02562 * 1 2 3 25 25 H 1.08004 * 119.66761 * 359.97438 * 10 9 7 26 26 H 1.08007 * 119.42829 * 180.28888 * 12 11 10 27 27 H 1.07997 * 125.95491 * 359.97102 * 15 14 13 28 28 H 1.08997 * 112.84790 * 325.49773 * 18 17 16 29 29 H 1.09001 * 113.61220 * 334.57099 * 19 18 17 30 30 H 1.08998 * 113.61727 * 105.47064 * 19 18 17 31 31 H 1.08998 * 113.53454 * 270.81615 * 20 19 18 32 32 H 1.09003 * 113.74673 * 139.94450 * 20 19 18 33 33 H 1.09005 * 113.61546 * 220.09059 * 21 20 19 34 34 H 1.09003 * 113.61690 * 89.19008 * 21 20 19 35 35 H 1.08002 * 126.19633 * 179.88797 * 22 17 16 36 36 H 1.07996 * 120.95391 * 180.29645 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7023 1.3464 0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8836 2.3964 1.2126 7 6 2.0078 -1.2119 0.0005 8 1 3.0551 -1.2309 -0.2629 9 6 1.3436 -2.4118 0.3459 10 6 1.8229 -3.6541 -0.1121 11 7 1.2065 -4.7702 0.2088 12 6 0.1275 -4.7822 0.9682 13 6 -0.4215 -3.5970 1.4622 14 6 -1.6400 -3.6294 2.3105 15 6 -2.2908 -2.5153 2.8750 16 7 -3.3216 -2.9474 3.5521 17 7 -3.3723 -4.3424 3.4430 18 6 -4.3793 -5.2155 4.0514 19 6 -3.9869 -6.7023 4.0505 20 6 -5.4553 -7.0069 3.7024 21 6 -5.5232 -5.5952 3.0963 22 6 -2.3327 -4.7437 2.6842 23 6 0.1902 -2.3860 1.1546 24 1 -0.4850 0.8401 -0.0004 25 1 2.7057 -3.6904 -0.7333 26 1 -0.3417 -5.7248 1.2088 27 1 -1.9902 -1.4836 2.7673 28 1 -4.7218 -4.8548 5.0213 29 1 -3.2863 -6.9685 3.2590 30 1 -3.6829 -7.0743 5.0289 31 1 -6.0920 -7.1373 4.5775 32 1 -5.5763 -7.8035 2.9684 33 1 -6.4577 -5.0746 3.3055 34 1 -5.2434 -5.5582 2.0434 35 1 -2.0943 -5.7625 2.4165 36 1 -0.2074 -1.4528 1.5253 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241723018.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:39 Heat of formation + Delta-G solvation = 116.655079 kcal Electronic energy + Delta-G solvation = -19358.453096 eV Core-core repulsion = 16423.265058 eV Total energy + Delta-G solvation = -2935.188038 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.98015 -38.62120 -37.93499 -34.04683 -32.15539 -30.91351 -30.28862 -28.13298 -25.98060 -25.59892 -25.05025 -22.18688 -21.99109 -20.56399 -19.77188 -19.06455 -17.49090 -16.78386 -15.88960 -15.49289 -15.16325 -14.57128 -14.30866 -14.05149 -13.96200 -13.17232 -12.90411 -12.57561 -12.46544 -12.25871 -12.11812 -11.60898 -11.52665 -11.44241 -11.21457 -10.94189 -10.88833 -10.80252 -10.53938 -10.30804 -9.79766 -9.37223 -9.08445 -8.98297 -8.06380 -7.78999 -6.99169 -6.76671 -4.46925 2.04138 2.57490 2.77605 2.83568 3.04982 3.10057 3.21915 3.75406 3.87840 4.09742 4.25866 4.51807 4.55165 4.66516 5.03705 5.17676 5.35363 5.42887 5.45122 5.58823 5.64327 5.69282 5.73312 5.91431 6.04880 6.06394 6.16832 6.33693 6.56695 6.81522 7.02631 7.09896 7.12889 7.32175 7.38905 7.74787 7.89314 7.97733 8.15481 8.46785 8.71015 8.75128 9.66541 10.09300 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.028353 B = 0.004487 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.317666 B = 6238.816760 C = 7030.589033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.451 4.451 8 H 0.083 0.917 9 C 0.066 3.934 10 C -0.024 4.024 11 N -0.470 5.470 12 C -0.034 4.034 13 C -0.043 4.043 14 C -0.159 4.159 15 C 0.064 3.936 16 N -0.309 5.309 17 N -0.370 5.370 18 C 0.141 3.859 19 C -0.147 4.147 20 C -0.137 4.137 21 C -0.149 4.149 22 C 0.047 3.953 23 C -0.125 4.125 24 H 0.282 0.718 25 H 0.125 0.875 26 H 0.115 0.885 27 H 0.184 0.816 28 H 0.117 0.883 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.170 0.830 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.102 -7.096 7.004 13.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.481 4.481 8 H 0.101 0.899 9 C 0.062 3.938 10 C -0.185 4.185 11 N -0.177 5.177 12 C -0.192 4.192 13 C -0.047 4.047 14 C -0.171 4.171 15 C -0.122 4.122 16 N -0.128 5.128 17 N -0.152 5.152 18 C 0.038 3.962 19 C -0.185 4.185 20 C -0.175 4.175 21 C -0.188 4.188 22 C -0.097 4.097 23 C -0.151 4.151 24 H 0.093 0.907 25 H 0.142 0.858 26 H 0.132 0.868 27 H 0.201 0.799 28 H 0.135 0.865 29 H 0.113 0.887 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.187 0.813 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.092 -7.477 7.486 14.621 hybrid contribution 0.632 1.452 -0.281 1.608 sum -9.460 -6.025 7.205 13.331 Atomic orbital electron populations 1.69803 1.07608 1.29400 1.34739 1.25943 0.94785 1.01483 0.92121 0.86222 0.80996 0.80694 0.78641 1.18285 1.19917 1.19621 1.19578 0.97742 0.90727 1.40052 0.89920 1.18453 0.92100 0.93634 0.89654 1.22478 1.02539 0.88178 1.05346 1.66888 1.07806 1.31789 1.11178 1.21590 0.97366 0.95144 1.05099 1.18792 0.93098 0.95191 0.97580 1.19086 1.00109 0.91423 1.06489 1.24027 0.92436 1.00271 0.95463 1.77138 1.22222 0.88717 1.24772 1.48382 1.21773 1.04816 1.40197 1.22819 0.87933 0.87860 0.97552 1.23446 0.98082 0.93432 1.03574 1.22727 0.96094 0.97273 1.01430 1.23453 0.98725 0.96380 1.00212 1.22289 0.90328 0.99885 0.97209 1.21671 0.98032 0.95968 0.99469 0.90680 0.85784 0.86790 0.79946 0.86530 0.88723 0.90045 0.89564 0.90287 0.90485 0.89218 0.81331 0.85276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.66 10.90 55.55 0.61 -19.06 16 2 C 0.08 1.81 5.20 -17.35 -0.09 1.72 16 3 Si 0.91 18.06 29.59 -169.99 -5.03 13.03 16 4 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 5 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 6 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 7 C -0.45 -11.57 9.09 -37.73 -0.34 -11.91 16 8 H 0.08 2.02 7.90 -52.48 -0.41 1.61 16 9 C 0.07 1.73 5.59 -106.71 -0.60 1.14 16 10 C -0.02 -0.61 10.96 -16.73 -0.18 -0.79 16 11 N -0.47 -11.68 10.32 -12.29 -0.13 -11.81 16 12 C -0.03 -0.79 10.73 -16.97 -0.18 -0.97 16 13 C -0.04 -1.01 5.89 -104.81 -0.62 -1.62 16 14 C -0.16 -3.23 6.05 -105.34 -0.64 -3.87 16 15 C 0.06 1.27 11.44 -17.06 -0.20 1.07 16 16 N -0.31 -5.72 12.54 30.80 0.39 -5.34 16 17 N -0.37 -5.86 3.80 -53.81 -0.20 -6.07 16 18 C 0.14 1.60 5.02 -67.11 -0.34 1.26 16 19 C -0.15 -1.28 7.45 -25.83 -0.19 -1.47 16 20 C -0.14 -1.00 8.09 -25.83 -0.21 -1.21 16 21 C -0.15 -1.45 7.88 -25.92 -0.20 -1.66 16 22 C 0.05 0.80 10.08 -16.89 -0.17 0.63 16 23 C -0.13 -3.18 8.32 -38.25 -0.32 -3.50 16 24 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 25 H 0.12 2.91 8.06 -52.48 -0.42 2.49 16 26 H 0.11 2.28 7.01 -52.48 -0.37 1.91 16 27 H 0.18 3.45 7.40 -52.49 -0.39 3.06 16 28 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.09 0.86 6.30 -51.93 -0.33 0.53 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.17 2.37 5.91 -52.49 -0.31 2.06 16 36 H 0.13 3.30 5.30 -52.49 -0.28 3.02 16 LS Contribution 305.28 15.07 4.60 4.60 Total: -1.00 -29.43 305.28 -8.22 -37.66 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -4.18 Total: 8.17 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -4.27 Total: -21.19 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: 0.66 Total: -42.27 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.03 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.43 -8.22 -37.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241723018.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.310 kcal (2) G-P(sol) polarization free energy of solvation -29.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds