Wall clock time and date at job start Mon Mar 30 2020 01:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86799 * 119.99996 * 2 1 4 4 H 1.48504 * 109.47126 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47162 * 299.99792 * 3 2 1 6 6 H 1.48505 * 109.47248 * 60.00285 * 3 2 1 7 7 C 1.39930 * 119.99708 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99866 * 163.64122 * 7 2 1 9 9 C 1.41432 * 120.00454 * 343.64612 * 7 2 1 10 10 C 1.40810 * 120.61041 * 155.73444 * 9 7 2 11 11 N 1.31481 * 120.65846 * 179.97438 * 10 9 7 12 12 C 1.31951 * 122.11339 * 359.75688 * 11 10 9 13 13 C 1.39647 * 121.15357 * 0.53657 * 12 11 10 14 14 C 1.48504 * 120.40409 * 179.71988 * 13 12 11 15 15 C 1.40833 * 126.21701 * 179.74751 * 14 13 12 16 16 N 1.30682 * 108.09581 * 179.97438 * 15 14 13 17 17 N 1.40012 * 108.51880 * 359.77153 * 16 15 14 18 18 C 1.46509 * 125.89148 * 180.24837 * 17 16 15 19 19 C 1.53778 * 113.61357 * 194.29938 * 18 17 16 20 20 C 1.53954 * 87.01938 * 220.05111 * 19 18 17 21 21 C 1.53778 * 87.11154 * 25.36298 * 20 19 18 22 22 C 1.34822 * 108.21258 * 0.38849 * 17 16 15 23 23 C 1.39118 * 119.18909 * 359.45504 * 13 12 11 24 24 H 0.97003 * 119.99832 * 0.02562 * 1 2 3 25 25 H 1.08004 * 119.66761 * 359.97438 * 10 9 7 26 26 H 1.08007 * 119.42829 * 180.28888 * 12 11 10 27 27 H 1.07997 * 125.95491 * 359.97102 * 15 14 13 28 28 H 1.08997 * 112.84790 * 325.49773 * 18 17 16 29 29 H 1.09001 * 113.61220 * 334.57099 * 19 18 17 30 30 H 1.08998 * 113.61727 * 105.47064 * 19 18 17 31 31 H 1.08998 * 113.53454 * 270.81615 * 20 19 18 32 32 H 1.09003 * 113.74673 * 139.94450 * 20 19 18 33 33 H 1.09005 * 113.61546 * 220.09059 * 21 20 19 34 34 H 1.09003 * 113.61690 * 89.19008 * 21 20 19 35 35 H 1.08002 * 126.19633 * 179.88797 * 22 17 16 36 36 H 1.07996 * 120.95391 * 180.29645 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7023 1.3464 0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8836 2.3964 1.2126 7 6 2.0078 -1.2119 0.0005 8 1 3.0551 -1.2309 -0.2629 9 6 1.3436 -2.4118 0.3459 10 6 1.8229 -3.6541 -0.1121 11 7 1.2065 -4.7702 0.2088 12 6 0.1275 -4.7822 0.9682 13 6 -0.4215 -3.5970 1.4622 14 6 -1.6400 -3.6294 2.3105 15 6 -2.2908 -2.5153 2.8750 16 7 -3.3216 -2.9474 3.5521 17 7 -3.3723 -4.3424 3.4430 18 6 -4.3793 -5.2155 4.0514 19 6 -3.9869 -6.7023 4.0505 20 6 -5.4553 -7.0069 3.7024 21 6 -5.5232 -5.5952 3.0963 22 6 -2.3327 -4.7437 2.6842 23 6 0.1902 -2.3860 1.1546 24 1 -0.4850 0.8401 -0.0004 25 1 2.7057 -3.6904 -0.7333 26 1 -0.3417 -5.7248 1.2088 27 1 -1.9902 -1.4836 2.7673 28 1 -4.7218 -4.8548 5.0213 29 1 -3.2863 -6.9685 3.2590 30 1 -3.6829 -7.0743 5.0289 31 1 -6.0920 -7.1373 4.5775 32 1 -5.5763 -7.8035 2.9684 33 1 -6.4577 -5.0746 3.3055 34 1 -5.2434 -5.5582 2.0434 35 1 -2.0943 -5.7625 2.4165 36 1 -0.2074 -1.4528 1.5253 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241723018.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:38 Heat of formation + Delta-G solvation = 100.547558 kcal Electronic energy + Delta-G solvation = -19359.151571 eV Core-core repulsion = 16423.265058 eV Total energy + Delta-G solvation = -2935.886513 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.31265 -40.04002 -39.25089 -35.91356 -33.74661 -32.34113 -32.14035 -29.66783 -27.47666 -26.71521 -26.11530 -23.96542 -23.54456 -21.89814 -21.27229 -20.09693 -19.14810 -18.25074 -17.28316 -16.97095 -16.64491 -16.10215 -15.80773 -15.47729 -15.33772 -14.51169 -14.20987 -14.02878 -13.84039 -13.43194 -13.40322 -13.23940 -13.09211 -13.08223 -12.65258 -12.29975 -12.15784 -11.87312 -11.62186 -11.59090 -11.40131 -11.18173 -10.74440 -10.31688 -9.97036 -9.69942 -8.72881 -8.51532 -6.41622 0.44929 0.97722 1.08439 1.41217 1.52392 1.56552 1.58236 2.09325 2.21117 2.82016 3.25509 3.51840 3.75519 3.81571 3.83350 3.87010 3.92436 4.17088 4.42819 4.54066 4.56062 4.68261 4.71104 4.78460 4.79938 4.91043 4.95813 5.01155 5.05926 5.19941 5.28912 5.35096 5.42841 5.63164 5.88591 5.97894 6.08070 6.15549 6.55476 6.71381 6.80914 6.84404 7.75232 8.28872 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.028353 B = 0.004487 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.317666 B = 6238.816760 C = 7030.589033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.037 3.963 3 Si 0.985 3.015 4 H -0.256 1.256 5 H -0.266 1.266 6 H -0.265 1.265 7 C -0.483 4.483 8 H 0.084 0.916 9 C 0.042 3.958 10 C -0.048 4.048 11 N -0.478 5.478 12 C -0.040 4.040 13 C -0.035 4.035 14 C -0.202 4.202 15 C 0.051 3.949 16 N -0.323 5.323 17 N -0.356 5.356 18 C 0.116 3.884 19 C -0.141 4.141 20 C -0.119 4.119 21 C -0.151 4.151 22 C 0.076 3.924 23 C -0.151 4.151 24 H 0.291 0.709 25 H 0.132 0.868 26 H 0.150 0.850 27 H 0.176 0.824 28 H 0.127 0.873 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.203 0.797 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.379 -8.457 8.032 15.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.179 4.179 3 Si 0.806 3.194 4 H -0.180 1.180 5 H -0.191 1.191 6 H -0.189 1.189 7 C -0.513 4.513 8 H 0.102 0.898 9 C 0.038 3.962 10 C -0.209 4.209 11 N -0.185 5.185 12 C -0.198 4.198 13 C -0.038 4.038 14 C -0.214 4.214 15 C -0.134 4.134 16 N -0.144 5.144 17 N -0.137 5.137 18 C 0.016 3.984 19 C -0.180 4.180 20 C -0.157 4.157 21 C -0.189 4.189 22 C -0.072 4.072 23 C -0.178 4.178 24 H 0.101 0.899 25 H 0.150 0.850 26 H 0.168 0.832 27 H 0.193 0.807 28 H 0.145 0.855 29 H 0.112 0.888 30 H 0.116 0.884 31 H 0.124 0.876 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.220 0.780 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.395 -8.852 8.525 16.760 hybrid contribution 0.834 1.738 -0.513 1.995 sum -10.561 -7.114 8.013 15.045 Atomic orbital electron populations 1.69854 1.09027 1.30797 1.34700 1.26787 0.95509 1.04564 0.91025 0.85107 0.79498 0.75920 0.78920 1.17952 1.19077 1.18923 1.19846 0.98087 0.91715 1.41623 0.89776 1.18773 0.92823 0.94400 0.90218 1.22623 1.03445 0.88308 1.06489 1.66915 1.08448 1.31517 1.11602 1.22158 0.96877 0.96518 1.04261 1.19020 0.93560 0.94484 0.96761 1.19025 1.00604 0.93070 1.08685 1.23967 0.93041 1.00238 0.96143 1.77091 1.21853 0.90547 1.24910 1.48860 1.21767 1.04254 1.38789 1.23531 0.87922 0.88633 0.98310 1.23496 0.99185 0.90722 1.04570 1.22710 0.95159 0.95667 1.02143 1.23453 0.98064 0.98407 0.99001 1.22666 0.89084 1.00326 0.95087 1.21690 0.98781 0.96622 1.00676 0.89869 0.85029 0.83232 0.80743 0.85524 0.88806 0.88416 0.87555 0.89069 0.89970 0.90744 0.78022 0.86365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.90 10.90 21.82 0.24 -41.66 16 2 C 0.04 1.83 5.20 85.25 0.44 2.27 16 3 Si 0.99 37.36 29.59 68.60 2.03 39.39 16 4 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 5 H -0.27 -9.69 7.11 99.48 0.71 -8.99 16 6 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 7 C -0.48 -25.67 9.09 23.47 0.21 -25.45 16 8 H 0.08 4.26 7.90 -2.91 -0.02 4.24 16 9 C 0.04 2.30 5.59 -21.22 -0.12 2.18 16 10 C -0.05 -2.51 10.96 85.37 0.94 -1.58 16 11 N -0.48 -23.86 10.32 -192.78 -1.99 -25.85 16 12 C -0.04 -1.82 10.73 85.02 0.91 -0.91 16 13 C -0.03 -1.65 5.89 -19.99 -0.12 -1.77 16 14 C -0.20 -8.16 6.05 -20.33 -0.12 -8.29 16 15 C 0.05 2.06 11.44 85.50 0.98 3.04 16 16 N -0.32 -11.86 12.54 -56.46 -0.71 -12.57 16 17 N -0.36 -10.62 3.80 -324.17 -1.23 -11.85 16 18 C 0.12 2.31 5.02 45.51 0.23 2.54 16 19 C -0.14 -1.90 7.45 31.18 0.23 -1.67 16 20 C -0.12 -1.23 8.09 31.18 0.25 -0.98 16 21 C -0.15 -2.51 7.88 31.12 0.25 -2.26 16 22 C 0.08 2.39 10.08 83.81 0.85 3.24 16 23 C -0.15 -8.00 8.32 23.13 0.19 -7.81 16 24 H 0.29 13.39 8.30 -92.71 -0.77 12.62 16 25 H 0.13 6.41 8.06 -2.91 -0.02 6.39 16 26 H 0.15 5.59 7.01 -2.91 -0.02 5.57 16 27 H 0.18 7.03 7.40 -2.91 -0.02 7.01 16 28 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.09 1.31 6.30 -2.39 -0.02 1.29 16 30 H 0.10 1.04 8.14 -2.39 -0.02 1.03 16 31 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.20 4.90 5.91 -2.91 -0.02 4.89 16 36 H 0.12 6.39 5.30 -2.91 -0.02 6.38 16 Total: -1.00 -65.38 305.28 4.56 -60.82 By element: Atomic # 1 Polarization: 28.06 SS G_CDS: 1.10 Total: 29.15 kcal Atomic # 6 Polarization: -42.56 SS G_CDS: 5.12 Total: -37.45 kcal Atomic # 7 Polarization: -88.23 SS G_CDS: -3.69 Total: -91.92 kcal Atomic # 14 Polarization: 37.36 SS G_CDS: 2.03 Total: 39.39 kcal Total: -65.38 4.56 -60.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241723018.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.367 kcal (2) G-P(sol) polarization free energy of solvation -65.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds