Wall clock time and date at job start Mon Mar 30 2020 01:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30729 * 1 3 3 Si 1.86792 * 120.00212 * 2 1 4 4 H 1.48504 * 109.47243 * 270.00149 * 3 2 1 5 5 H 1.48503 * 109.47129 * 30.00311 * 3 2 1 6 6 H 1.48501 * 109.47408 * 149.99998 * 3 2 1 7 7 C 1.40105 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00449 * 179.97438 * 7 2 1 9 9 C 1.40771 * 119.99913 * 359.97438 * 7 2 1 10 10 N 1.33721 * 119.94202 * 0.28880 * 9 7 2 11 11 C 1.31278 * 121.63011 * 180.29041 * 10 9 7 12 12 C 1.39071 * 121.34537 * 359.70290 * 11 10 9 13 13 C 1.38350 * 119.73909 * 0.02562 * 12 11 10 14 14 C 1.39715 * 118.47473 * 359.97438 * 13 12 11 15 15 C 1.47802 * 120.65349 * 180.02562 * 14 13 12 16 16 C 1.41172 * 126.39078 * 129.97751 * 15 14 13 17 17 N 1.30525 * 108.10902 * 180.02562 * 16 15 14 18 18 N 1.39947 * 108.88885 * 359.97438 * 17 16 15 19 19 C 1.46494 * 125.79607 * 179.97438 * 18 17 16 20 20 C 1.53779 * 113.61837 * 194.13578 * 19 18 17 21 21 C 1.53948 * 87.02351 * 220.05116 * 20 19 18 22 22 C 1.53778 * 113.61399 * 96.52655 * 19 18 17 23 23 C 1.34646 * 108.40558 * 0.02562 * 18 17 16 24 24 H 0.97002 * 119.99409 * 359.97438 * 1 2 3 25 25 H 1.08003 * 119.32623 * 179.68098 * 11 10 9 26 26 H 1.08004 * 120.13388 * 180.02562 * 12 11 10 27 27 H 1.07997 * 120.76233 * 180.02562 * 13 12 11 28 28 H 1.07995 * 125.94175 * 0.03917 * 16 15 14 29 29 H 1.09001 * 112.85250 * 325.33389 * 19 18 17 30 30 H 1.09004 * 113.61220 * 334.57429 * 20 19 18 31 31 H 1.09003 * 113.61491 * 105.46569 * 20 19 18 32 32 H 1.09004 * 113.53678 * 270.80777 * 21 20 19 33 33 H 1.08998 * 113.74267 * 139.94481 * 21 20 19 34 34 H 1.08997 * 113.62185 * 254.53176 * 22 19 18 35 35 H 1.09006 * 113.61316 * 25.44016 * 22 19 18 36 36 H 1.08006 * 126.31388 * 180.26172 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6176 0.0000 4 1 2.4888 2.0464 -1.4001 5 1 1.4388 2.6526 0.7001 6 1 3.5389 1.4401 0.7000 7 6 2.0078 -1.2133 -0.0005 8 1 3.0878 -1.2134 -0.0010 9 6 1.3039 -2.4324 -0.0005 10 7 -0.0333 -2.4311 -0.0059 11 6 -0.7229 -3.5481 -0.0004 12 6 -0.0923 -4.7876 0.0051 13 6 1.2896 -4.8546 0.0053 14 6 2.0144 -3.6602 -0.0005 15 6 3.4923 -3.6755 -0.0011 16 6 4.3370 -2.9582 -0.8757 17 7 5.5737 -3.2331 -0.5616 18 7 5.5797 -4.1271 0.5151 19 6 6.7715 -4.6797 1.1634 20 6 6.4752 -5.8813 2.0762 21 6 7.5030 -5.2878 3.0566 22 6 7.1924 -3.9176 2.4311 23 6 4.3040 -4.3940 0.8531 24 1 -0.4849 0.8401 0.0004 25 1 -1.8020 -3.5036 0.0003 26 1 -0.6790 -5.6944 0.0091 27 1 1.7964 -5.8082 0.0091 28 1 4.0158 -2.2969 -1.6668 29 1 7.5910 -4.8529 0.4659 30 1 5.4570 -5.8934 2.4653 31 1 6.7780 -6.8381 1.6507 32 1 8.5228 -5.6285 2.8773 33 1 7.2081 -5.3671 4.1029 34 1 8.0735 -3.2914 2.2918 35 1 6.3707 -3.3919 2.9175 36 1 3.9763 -5.0463 1.6492 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241724901.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:43 Heat of formation + Delta-G solvation = 129.899681 kcal Electronic energy + Delta-G solvation = -19735.129041 eV Core-core repulsion = 16800.515332 eV Total energy + Delta-G solvation = -2934.613709 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.67419 -38.46474 -37.72239 -33.61570 -31.90024 -30.78528 -30.07639 -28.13918 -25.90978 -25.57905 -24.94349 -22.15044 -21.32653 -20.58169 -19.68655 -18.84029 -17.43144 -16.98064 -15.73706 -15.50878 -14.52385 -14.39898 -14.05122 -13.98953 -13.85269 -12.99329 -12.77698 -12.52209 -12.25119 -12.19502 -11.82480 -11.69401 -11.36377 -11.18662 -11.07245 -10.94337 -10.76316 -10.67589 -10.39647 -10.11488 -9.73110 -9.36865 -8.72536 -8.39734 -7.87626 -7.53532 -7.01901 -6.38658 -4.45178 2.38816 2.76191 2.96423 3.00719 3.10298 3.14673 3.25657 3.79097 3.96276 4.23261 4.37531 4.64820 4.66175 4.77642 5.21585 5.34604 5.48610 5.58968 5.60449 5.70443 5.75450 5.84518 5.94154 6.12546 6.15509 6.19769 6.40089 6.50115 6.67758 6.71019 6.96687 7.14515 7.32440 7.44364 7.58398 7.74244 7.82987 8.10928 8.29885 8.43052 8.67987 8.99026 10.13821 10.31845 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.016953 B = 0.006366 C = 0.005015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.215928 B = 4397.508164 C = 5582.084954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.712 5.712 2 C 0.069 3.931 3 Si 0.902 3.098 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.419 4.419 8 H 0.090 0.910 9 C 0.267 3.733 10 N -0.484 5.484 11 C 0.126 3.874 12 C -0.321 4.321 13 C -0.044 4.044 14 C -0.187 4.187 15 C -0.122 4.122 16 C 0.064 3.936 17 N -0.317 5.317 18 N -0.370 5.370 19 C 0.143 3.857 20 C -0.146 4.146 21 C -0.138 4.138 22 C -0.150 4.150 23 C 0.024 3.976 24 H 0.273 0.727 25 H 0.116 0.884 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.182 0.818 29 H 0.114 0.886 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.254 -6.963 4.082 13.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.333 5.333 2 C -0.157 4.157 3 Si 0.726 3.274 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.450 4.450 8 H 0.108 0.892 9 C 0.143 3.857 10 N -0.195 5.195 11 C -0.042 4.042 12 C -0.344 4.344 13 C -0.068 4.068 14 C -0.193 4.193 15 C -0.133 4.133 16 C -0.121 4.121 17 N -0.138 5.138 18 N -0.153 5.153 19 C 0.041 3.959 20 C -0.185 4.185 21 C -0.176 4.176 22 C -0.188 4.188 23 C -0.120 4.120 24 H 0.084 0.916 25 H 0.134 0.866 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.198 0.802 29 H 0.132 0.868 30 H 0.112 0.888 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 11.004 -5.806 3.854 13.025 hybrid contribution -0.187 -0.318 0.241 0.440 sum 10.817 -6.124 4.095 13.087 Atomic orbital electron populations 1.70142 1.07207 1.27776 1.28131 1.26125 0.94836 1.01108 0.93619 0.86409 0.80621 0.80992 0.79413 1.19223 1.20122 1.18496 1.19680 0.94764 0.89177 1.41337 0.89177 1.18540 0.87858 0.91099 0.88232 1.68769 1.07146 1.26519 1.17104 1.22551 0.98685 0.88920 0.94031 1.21180 0.94594 0.97702 1.20966 1.20849 0.93653 0.95671 0.96632 1.18725 0.89252 0.93995 1.17368 1.19026 0.93433 1.02177 0.98683 1.24051 0.89205 0.99194 0.99695 1.76960 1.21955 1.10784 1.04067 1.48118 1.04470 1.36199 1.26513 1.22711 0.86639 0.94238 0.92356 1.23426 1.01105 0.97391 0.96555 1.22725 0.99240 0.96258 0.99343 1.23452 1.02365 0.97100 0.95907 1.22627 0.83938 1.03758 1.01686 0.91622 0.86638 0.89009 0.88964 0.80156 0.86801 0.88825 0.90270 0.89683 0.90450 0.90614 0.89196 0.82029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.86 11.46 55.56 0.64 -18.22 16 2 C 0.07 1.75 5.50 -17.32 -0.10 1.66 16 3 Si 0.90 18.85 29.56 -169.99 -5.02 13.83 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.23 16 6 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.42 -11.07 8.48 -37.92 -0.32 -11.39 16 8 H 0.09 2.29 5.39 -52.49 -0.28 2.01 16 9 C 0.27 7.20 6.57 -84.71 -0.56 6.64 16 10 N -0.48 -13.30 7.85 -10.91 -0.09 -13.38 16 11 C 0.13 3.05 11.17 -17.48 -0.20 2.85 16 12 C -0.32 -7.18 10.10 -39.23 -0.40 -7.58 16 13 C -0.04 -0.98 9.86 -38.99 -0.38 -1.36 16 14 C -0.19 -4.53 5.83 -104.06 -0.61 -5.13 16 15 C -0.12 -2.63 5.07 -104.95 -0.53 -3.16 16 16 C 0.06 1.35 9.93 -16.99 -0.17 1.18 16 17 N -0.32 -6.31 12.50 30.85 0.39 -5.92 16 18 N -0.37 -6.38 3.79 -53.44 -0.20 -6.58 16 19 C 0.14 1.81 5.01 -67.12 -0.34 1.47 16 20 C -0.15 -1.43 7.45 -25.83 -0.19 -1.63 16 21 C -0.14 -1.15 8.09 -25.83 -0.21 -1.36 16 22 C -0.15 -1.66 7.88 -25.92 -0.20 -1.87 16 23 C 0.02 0.44 10.65 -16.40 -0.17 0.27 16 24 H 0.27 6.55 8.29 -40.82 -0.34 6.22 16 25 H 0.12 2.49 8.06 -52.48 -0.42 2.07 16 26 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 27 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 28 H 0.18 3.67 7.87 -52.49 -0.41 3.26 16 29 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.09 0.97 6.30 -51.93 -0.33 0.64 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.16 2.56 6.68 -52.48 -0.35 2.21 16 LS Contribution 305.62 15.07 4.61 4.61 Total: -1.00 -30.38 305.62 -8.37 -38.75 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -4.31 Total: 6.34 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -4.37 Total: -19.41 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: 0.73 Total: -44.11 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.02 Total: 13.83 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.38 -8.37 -38.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241724901.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.648 kcal (2) G-P(sol) polarization free energy of solvation -30.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds