Wall clock time and date at job start Mon Mar 30 2020 01:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30729 * 1 3 3 Si 1.86792 * 120.00212 * 2 1 4 4 H 1.48504 * 109.47243 * 270.00149 * 3 2 1 5 5 H 1.48503 * 109.47129 * 30.00311 * 3 2 1 6 6 H 1.48501 * 109.47408 * 149.99998 * 3 2 1 7 7 C 1.40105 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00449 * 179.97438 * 7 2 1 9 9 C 1.40771 * 119.99913 * 359.97438 * 7 2 1 10 10 N 1.33721 * 119.94202 * 0.28880 * 9 7 2 11 11 C 1.31278 * 121.63011 * 180.29041 * 10 9 7 12 12 C 1.39071 * 121.34537 * 359.70290 * 11 10 9 13 13 C 1.38350 * 119.73909 * 0.02562 * 12 11 10 14 14 C 1.39715 * 118.47473 * 359.97438 * 13 12 11 15 15 C 1.47802 * 120.65349 * 180.02562 * 14 13 12 16 16 C 1.41172 * 126.39078 * 129.97751 * 15 14 13 17 17 N 1.30525 * 108.10902 * 180.02562 * 16 15 14 18 18 N 1.39947 * 108.88885 * 359.97438 * 17 16 15 19 19 C 1.46494 * 125.79607 * 179.97438 * 18 17 16 20 20 C 1.53779 * 113.61837 * 194.13578 * 19 18 17 21 21 C 1.53948 * 87.02351 * 220.05116 * 20 19 18 22 22 C 1.53778 * 113.61399 * 96.52655 * 19 18 17 23 23 C 1.34646 * 108.40558 * 0.02562 * 18 17 16 24 24 H 0.97002 * 119.99409 * 359.97438 * 1 2 3 25 25 H 1.08003 * 119.32623 * 179.68098 * 11 10 9 26 26 H 1.08004 * 120.13388 * 180.02562 * 12 11 10 27 27 H 1.07997 * 120.76233 * 180.02562 * 13 12 11 28 28 H 1.07995 * 125.94175 * 0.03917 * 16 15 14 29 29 H 1.09001 * 112.85250 * 325.33389 * 19 18 17 30 30 H 1.09004 * 113.61220 * 334.57429 * 20 19 18 31 31 H 1.09003 * 113.61491 * 105.46569 * 20 19 18 32 32 H 1.09004 * 113.53678 * 270.80777 * 21 20 19 33 33 H 1.08998 * 113.74267 * 139.94481 * 21 20 19 34 34 H 1.08997 * 113.62185 * 254.53176 * 22 19 18 35 35 H 1.09006 * 113.61316 * 25.44016 * 22 19 18 36 36 H 1.08006 * 126.31388 * 180.26172 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6176 0.0000 4 1 2.4888 2.0464 -1.4001 5 1 1.4388 2.6526 0.7001 6 1 3.5389 1.4401 0.7000 7 6 2.0078 -1.2133 -0.0005 8 1 3.0878 -1.2134 -0.0010 9 6 1.3039 -2.4324 -0.0005 10 7 -0.0333 -2.4311 -0.0059 11 6 -0.7229 -3.5481 -0.0004 12 6 -0.0923 -4.7876 0.0051 13 6 1.2896 -4.8546 0.0053 14 6 2.0144 -3.6602 -0.0005 15 6 3.4923 -3.6755 -0.0011 16 6 4.3370 -2.9582 -0.8757 17 7 5.5737 -3.2331 -0.5616 18 7 5.5797 -4.1271 0.5151 19 6 6.7715 -4.6797 1.1634 20 6 6.4752 -5.8813 2.0762 21 6 7.5030 -5.2878 3.0566 22 6 7.1924 -3.9176 2.4311 23 6 4.3040 -4.3940 0.8531 24 1 -0.4849 0.8401 0.0004 25 1 -1.8020 -3.5036 0.0003 26 1 -0.6790 -5.6944 0.0091 27 1 1.7964 -5.8082 0.0091 28 1 4.0158 -2.2969 -1.6668 29 1 7.5910 -4.8529 0.4659 30 1 5.4570 -5.8934 2.4653 31 1 6.7780 -6.8381 1.6507 32 1 8.5228 -5.6285 2.8773 33 1 7.2081 -5.3671 4.1029 34 1 8.0735 -3.2914 2.2918 35 1 6.3707 -3.3919 2.9175 36 1 3.9763 -5.0463 1.6492 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241724901.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:43 Heat of formation + Delta-G solvation = 113.106263 kcal Electronic energy + Delta-G solvation = -19735.857258 eV Core-core repulsion = 16800.515332 eV Total energy + Delta-G solvation = -2935.341926 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.07577 -39.88914 -39.13311 -35.48656 -33.54526 -32.34899 -31.84104 -29.74731 -27.47416 -26.68411 -26.11245 -23.74895 -23.15647 -21.90763 -21.17425 -19.99280 -19.30678 -18.29776 -17.33468 -16.63792 -16.16898 -16.04500 -15.58047 -15.51459 -15.25956 -14.44845 -14.11380 -13.93993 -13.73087 -13.48381 -13.29034 -13.10076 -12.86886 -12.82153 -12.66831 -12.27758 -12.20053 -11.84712 -11.60147 -11.45737 -11.32129 -11.20754 -10.23473 -10.11272 -9.68333 -9.42120 -8.71792 -8.24447 -6.38039 0.76557 1.06874 1.21529 1.38184 1.49905 1.54297 1.72684 2.13037 2.22126 2.89301 3.32696 3.54840 3.80656 3.84585 3.95709 4.06696 4.10245 4.34861 4.45584 4.57696 4.68943 4.70100 4.79169 4.82503 4.94678 4.97654 5.00334 5.05001 5.06569 5.20997 5.30623 5.39875 5.57196 5.73238 5.87506 6.03481 6.27081 6.30658 6.39452 6.79368 6.90266 7.08602 8.26383 8.47677 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.016953 B = 0.006366 C = 0.005015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.215928 B = 4397.508164 C = 5582.084954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.027 3.973 3 Si 0.973 3.027 4 H -0.260 1.260 5 H -0.266 1.266 6 H -0.264 1.264 7 C -0.449 4.449 8 H 0.089 0.911 9 C 0.234 3.766 10 N -0.522 5.522 11 C 0.100 3.900 12 C -0.308 4.308 13 C -0.051 4.051 14 C -0.188 4.188 15 C -0.162 4.162 16 C 0.050 3.950 17 N -0.332 5.332 18 N -0.357 5.357 19 C 0.119 3.881 20 C -0.139 4.139 21 C -0.118 4.118 22 C -0.153 4.153 23 C 0.046 3.954 24 H 0.278 0.722 25 H 0.134 0.866 26 H 0.126 0.874 27 H 0.124 0.876 28 H 0.172 0.828 29 H 0.126 0.874 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.122 -8.748 5.230 15.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.195 4.195 3 Si 0.794 3.206 4 H -0.185 1.185 5 H -0.190 1.190 6 H -0.188 1.188 7 C -0.480 4.480 8 H 0.107 0.893 9 C 0.110 3.890 10 N -0.235 5.235 11 C -0.065 4.065 12 C -0.331 4.331 13 C -0.076 4.076 14 C -0.194 4.194 15 C -0.174 4.174 16 C -0.135 4.135 17 N -0.153 5.153 18 N -0.139 5.139 19 C 0.018 3.982 20 C -0.178 4.178 21 C -0.156 4.156 22 C -0.192 4.192 23 C -0.100 4.100 24 H 0.088 0.912 25 H 0.152 0.848 26 H 0.144 0.856 27 H 0.142 0.858 28 H 0.190 0.810 29 H 0.144 0.856 30 H 0.108 0.892 31 H 0.117 0.883 32 H 0.126 0.874 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 12.881 -7.616 4.998 15.777 hybrid contribution -0.684 0.032 -0.073 0.688 sum 12.197 -7.584 4.925 15.184 Atomic orbital electron populations 1.70231 1.08647 1.28847 1.29733 1.26915 0.95577 1.04171 0.92801 0.85350 0.78932 0.76755 0.79593 1.18499 1.19036 1.18809 1.19870 0.94830 0.90112 1.43220 0.89342 1.18960 0.88245 0.92608 0.89200 1.68686 1.07885 1.28396 1.18501 1.22977 0.99714 0.89257 0.94594 1.21543 0.95045 0.98181 1.18369 1.21225 0.93856 0.96439 0.96052 1.18989 0.90813 0.93732 1.15877 1.19038 0.92682 1.04751 1.00887 1.23950 0.89709 0.99685 1.00140 1.76897 1.21278 1.11795 1.05358 1.48581 1.05624 1.34546 1.25125 1.23422 0.85534 0.96203 0.93024 1.23451 1.01473 0.97010 0.95821 1.22708 1.00084 0.93300 0.99490 1.23447 1.01859 0.98673 0.95195 1.22928 0.83942 1.02305 1.00844 0.91173 0.84844 0.85636 0.85806 0.81049 0.85602 0.89246 0.88312 0.87386 0.89283 0.90061 0.91248 0.79184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -41.38 11.46 21.85 0.25 -41.13 16 2 C 0.03 1.43 5.50 85.31 0.47 1.90 16 3 Si 0.97 39.89 29.56 68.60 2.03 41.92 16 4 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 5 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 6 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 7 C -0.45 -24.73 8.48 23.34 0.20 -24.54 16 8 H 0.09 4.72 5.39 -2.91 -0.02 4.70 16 9 C 0.23 13.08 6.57 40.37 0.27 13.35 16 10 N -0.52 -29.60 7.85 -188.41 -1.48 -31.08 16 11 C 0.10 4.88 11.17 84.98 0.95 5.83 16 12 C -0.31 -13.34 10.10 22.50 0.23 -13.11 16 13 C -0.05 -2.23 9.86 22.65 0.22 -2.01 16 14 C -0.19 -9.18 5.83 -19.50 -0.11 -9.30 16 15 C -0.16 -7.01 5.07 -20.08 -0.10 -7.11 16 16 C 0.05 2.13 9.93 85.61 0.85 2.98 16 17 N -0.33 -13.13 12.50 -56.32 -0.70 -13.83 16 18 N -0.36 -11.75 3.79 -322.99 -1.22 -12.98 16 19 C 0.12 2.68 5.01 45.52 0.23 2.91 16 20 C -0.14 -2.19 7.45 31.18 0.23 -1.96 16 21 C -0.12 -1.49 8.09 31.18 0.25 -1.24 16 22 C -0.15 -3.03 7.88 31.12 0.25 -2.79 16 23 C 0.05 1.64 10.65 84.21 0.90 2.53 16 24 H 0.28 13.83 8.29 -92.71 -0.77 13.06 16 25 H 0.13 5.78 8.06 -2.91 -0.02 5.75 16 26 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 27 H 0.12 4.52 8.06 -2.91 -0.02 4.49 16 28 H 0.17 7.41 7.87 -2.91 -0.02 7.39 16 29 H 0.13 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.09 1.52 6.30 -2.38 -0.02 1.50 16 31 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.11 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.19 5.47 6.68 -2.91 -0.02 5.45 16 Total: -1.00 -68.10 305.62 4.78 -63.31 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: 1.09 Total: 26.34 kcal Atomic # 6 Polarization: -37.38 SS G_CDS: 4.82 Total: -32.56 kcal Atomic # 7 Polarization: -95.86 SS G_CDS: -3.16 Total: -99.02 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.92 kcal Total: -68.10 4.78 -63.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241724901.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.419 kcal (2) G-P(sol) polarization free energy of solvation -68.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds