Wall clock time and date at job start Mon Mar 30 2020 01:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30719 * 1 3 3 Si 1.86798 * 120.00389 * 2 1 4 4 H 1.48506 * 109.46842 * 269.99696 * 3 2 1 5 5 H 1.48495 * 109.47263 * 29.99009 * 3 2 1 6 6 H 1.48494 * 109.47316 * 149.99669 * 3 2 1 7 7 C 1.40128 * 119.99715 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00110 * 164.50176 * 7 2 1 9 9 C 1.40897 * 119.99932 * 344.50512 * 7 2 1 10 10 C 1.41136 * 121.10787 * 335.06633 * 9 7 2 11 11 C 1.36440 * 119.11190 * 180.29720 * 10 9 7 12 12 N 1.32235 * 121.51620 * 359.73025 * 11 10 9 13 13 C 1.31659 * 122.50624 * 359.97438 * 12 11 10 14 14 C 1.39345 * 120.65440 * 0.02612 * 13 12 11 15 15 C 1.47852 * 120.78651 * 179.97438 * 14 13 12 16 16 C 1.41152 * 126.38252 * 129.97834 * 15 14 13 17 17 N 1.30532 * 108.11174 * 180.02562 * 16 15 14 18 18 N 1.39943 * 108.88599 * 359.97438 * 17 16 15 19 19 C 1.46504 * 125.81089 * 180.02562 * 18 17 16 20 20 C 1.53778 * 113.61766 * 194.09311 * 19 18 17 21 21 C 1.53947 * 87.01917 * 220.04614 * 20 19 18 22 22 C 1.53780 * 113.61449 * 96.48209 * 19 18 17 23 23 C 1.34682 * 108.39211 * 359.97438 * 18 17 16 24 24 H 0.97003 * 119.99282 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.44560 * 0.04619 * 10 9 7 26 26 H 1.07996 * 119.24580 * 179.74662 * 11 10 9 27 27 H 1.08003 * 119.67032 * 180.02562 * 13 12 11 28 28 H 1.07992 * 125.94312 * 0.03932 * 16 15 14 29 29 H 1.09004 * 112.84414 * 325.28693 * 19 18 17 30 30 H 1.08996 * 113.61351 * 334.56531 * 20 19 18 31 31 H 1.09001 * 113.61407 * 105.46425 * 20 19 18 32 32 H 1.09008 * 113.53961 * 270.81282 * 21 20 19 33 33 H 1.08998 * 113.74270 * 139.94648 * 21 20 19 34 34 H 1.09000 * 113.61333 * 254.52979 * 22 19 18 35 35 H 1.09000 * 113.61485 * 25.43887 * 22 19 18 36 36 H 1.08002 * 126.31710 * 180.26626 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.4889 2.0462 -1.4002 5 1 1.4388 2.6527 0.6998 6 1 3.5388 1.4401 0.7001 7 6 2.0078 -1.2136 0.0005 8 1 3.0583 -1.2308 -0.2494 9 6 1.3416 -2.4114 0.3271 10 6 0.1830 -2.4051 1.1330 11 6 -0.4261 -3.5895 1.4290 12 7 0.0411 -4.7399 0.9740 13 6 1.1130 -4.8169 0.2133 14 6 1.8112 -3.6667 -0.1490 15 6 3.0155 -3.7499 -1.0026 16 6 3.2712 -2.9924 -2.1659 17 7 4.4341 -3.3523 -2.6371 18 7 4.9714 -4.3438 -1.8084 19 6 6.2634 -5.0089 -1.9944 20 6 6.4325 -6.2764 -1.1402 21 6 7.8852 -5.8256 -0.9028 22 6 7.4002 -4.3898 -1.1642 23 6 4.0994 -4.5818 -0.8101 24 1 -0.4849 0.8401 -0.0004 25 1 -0.2137 -1.4756 1.5138 26 1 -1.3104 -3.5876 2.0490 27 1 1.4543 -5.7811 -0.1333 28 1 2.6183 -2.2450 -2.5919 29 1 6.5180 -5.1529 -3.0445 30 1 5.8228 -6.2786 -0.2367 31 1 6.3491 -7.2016 -1.7105 32 1 8.5837 -6.1941 -1.6541 33 1 8.2345 -5.9896 0.1166 34 1 8.0971 -3.7942 -1.7539 35 1 7.0556 -3.8752 -0.2673 36 1 4.2264 -5.2906 -0.0051 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241724971.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:32 Heat of formation + Delta-G solvation = 118.112140 kcal Electronic energy + Delta-G solvation = -19713.351423 eV Core-core repulsion = 16778.226568 eV Total energy + Delta-G solvation = -2935.124855 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.66293 -38.50394 -37.86421 -34.13965 -31.88070 -30.66976 -30.10373 -27.98632 -25.99239 -25.76591 -24.93263 -22.10278 -21.45826 -20.59107 -19.65009 -18.85953 -17.58979 -16.89908 -15.73514 -15.52819 -14.56636 -14.40614 -14.12922 -14.07037 -13.86515 -12.97719 -12.76997 -12.63189 -12.33336 -12.23532 -12.10719 -11.79938 -11.42762 -11.35864 -11.21569 -10.96715 -10.74274 -10.67526 -10.33164 -10.11764 -9.73880 -9.43818 -8.73360 -8.34379 -7.94583 -7.74457 -7.10860 -6.78394 -4.54906 2.35709 2.75283 2.83280 3.01259 3.02196 3.07104 3.26310 3.77026 3.85276 4.23427 4.37634 4.64238 4.65635 4.66693 5.21818 5.35058 5.48403 5.58081 5.59626 5.69111 5.72526 5.75559 5.84557 5.88743 6.17996 6.28451 6.44175 6.56998 6.67260 6.94769 6.97733 7.22316 7.36322 7.44126 7.57896 7.65125 7.91804 8.14172 8.44230 8.48691 8.74182 8.79545 9.67485 10.04132 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.017177 B = 0.006266 C = 0.004956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.704147 B = 4467.361432 C = 5648.893289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.078 3.922 3 Si 0.907 3.093 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.439 4.439 8 H 0.084 0.916 9 C 0.142 3.858 10 C -0.209 4.209 11 C 0.077 3.923 12 N -0.579 5.579 13 C 0.118 3.882 14 C -0.186 4.186 15 C -0.124 4.124 16 C 0.072 3.928 17 N -0.319 5.319 18 N -0.371 5.371 19 C 0.144 3.856 20 C -0.146 4.146 21 C -0.138 4.138 22 C -0.149 4.149 23 C 0.025 3.975 24 H 0.283 0.717 25 H 0.125 0.875 26 H 0.116 0.884 27 H 0.117 0.883 28 H 0.181 0.819 29 H 0.114 0.886 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.076 -5.513 -1.499 12.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.470 4.470 8 H 0.102 0.898 9 C 0.134 3.866 10 C -0.231 4.231 11 C -0.071 4.071 12 N -0.294 5.294 13 C -0.040 4.040 14 C -0.192 4.192 15 C -0.136 4.136 16 C -0.114 4.114 17 N -0.139 5.139 18 N -0.154 5.154 19 C 0.041 3.959 20 C -0.185 4.185 21 C -0.176 4.176 22 C -0.188 4.188 23 C -0.119 4.119 24 H 0.095 0.905 25 H 0.143 0.857 26 H 0.133 0.867 27 H 0.135 0.865 28 H 0.198 0.802 29 H 0.132 0.868 30 H 0.112 0.888 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.107 0.893 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 11.361 -5.993 -2.199 13.032 hybrid contribution 0.103 1.569 0.399 1.622 sum 11.464 -4.424 -1.800 12.419 Atomic orbital electron populations 1.69765 1.07697 1.29611 1.33610 1.26000 0.94712 1.01490 0.92006 0.86314 0.80674 0.80395 0.79518 1.19201 1.19973 1.18405 1.19524 0.97536 0.90373 1.39536 0.89811 1.17744 0.90282 0.91436 0.87169 1.21895 1.00141 0.98164 1.02884 1.21667 0.98234 0.88918 0.98300 1.67288 1.15770 1.29131 1.17173 1.22043 0.91552 0.95811 0.94557 1.18906 0.99212 0.94542 1.06584 1.18988 0.95965 1.00417 0.98197 1.24043 0.93338 0.99060 0.94946 1.76980 1.12352 1.06755 1.17852 1.48144 1.15376 1.31099 1.20734 1.22711 0.80112 0.92579 1.00523 1.23426 0.97380 0.96978 1.00687 1.22725 0.95980 0.96239 1.02634 1.23449 0.97430 0.97029 1.00905 1.22654 0.91197 1.03135 0.94949 0.90549 0.85741 0.86663 0.86509 0.80203 0.86804 0.88793 0.90231 0.89686 0.90462 0.90645 0.89251 0.81941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.22 10.91 55.56 0.61 -18.62 16 2 C 0.08 1.87 5.22 -17.32 -0.09 1.78 16 3 Si 0.91 18.18 29.59 -169.99 -5.03 13.15 16 4 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 6 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.44 -11.06 7.95 -37.87 -0.30 -11.36 16 8 H 0.08 2.11 6.78 -52.49 -0.36 1.76 16 9 C 0.14 3.64 5.62 -106.26 -0.60 3.05 16 10 C -0.21 -5.30 8.72 -39.13 -0.34 -5.64 16 11 C 0.08 1.86 11.09 -18.03 -0.20 1.66 16 12 N -0.58 -14.09 10.32 -13.36 -0.14 -14.22 16 13 C 0.12 2.73 10.90 -17.21 -0.19 2.54 16 14 C -0.19 -4.43 5.84 -104.02 -0.61 -5.03 16 15 C -0.12 -2.64 5.04 -104.95 -0.53 -3.17 16 16 C 0.07 1.52 10.49 -17.00 -0.18 1.34 16 17 N -0.32 -6.33 12.51 30.84 0.39 -5.94 16 18 N -0.37 -6.32 3.79 -53.43 -0.20 -6.52 16 19 C 0.14 1.79 5.01 -67.12 -0.34 1.45 16 20 C -0.15 -1.41 7.45 -25.83 -0.19 -1.60 16 21 C -0.14 -1.13 8.09 -25.83 -0.21 -1.34 16 22 C -0.15 -1.63 7.88 -25.92 -0.20 -1.83 16 23 C 0.02 0.45 10.65 -16.40 -0.17 0.27 16 24 H 0.28 6.34 8.29 -40.82 -0.34 6.00 16 25 H 0.12 3.20 6.22 -52.49 -0.33 2.88 16 26 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 27 H 0.12 2.39 8.06 -52.48 -0.42 1.97 16 28 H 0.18 3.78 8.01 -52.49 -0.42 3.36 16 29 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.09 0.95 6.30 -51.93 -0.33 0.63 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.16 2.50 6.68 -52.49 -0.35 2.15 16 LS Contribution 305.62 15.07 4.61 4.61 Total: -1.00 -28.72 305.62 -8.22 -36.93 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -4.30 Total: 8.51 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -4.15 Total: -17.89 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: 0.65 Total: -45.30 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.15 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.72 -8.22 -36.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241724971.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.045 kcal (2) G-P(sol) polarization free energy of solvation -28.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds