Wall clock time and date at job start Mon Mar 30 2020 01:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30719 * 1 3 3 Si 1.86798 * 120.00389 * 2 1 4 4 H 1.48506 * 109.46842 * 269.99696 * 3 2 1 5 5 H 1.48495 * 109.47263 * 29.99009 * 3 2 1 6 6 H 1.48494 * 109.47316 * 149.99669 * 3 2 1 7 7 C 1.40128 * 119.99715 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00110 * 164.50176 * 7 2 1 9 9 C 1.40897 * 119.99932 * 344.50512 * 7 2 1 10 10 C 1.41136 * 121.10787 * 335.06633 * 9 7 2 11 11 C 1.36440 * 119.11190 * 180.29720 * 10 9 7 12 12 N 1.32235 * 121.51620 * 359.73025 * 11 10 9 13 13 C 1.31659 * 122.50624 * 359.97438 * 12 11 10 14 14 C 1.39345 * 120.65440 * 0.02612 * 13 12 11 15 15 C 1.47852 * 120.78651 * 179.97438 * 14 13 12 16 16 C 1.41152 * 126.38252 * 129.97834 * 15 14 13 17 17 N 1.30532 * 108.11174 * 180.02562 * 16 15 14 18 18 N 1.39943 * 108.88599 * 359.97438 * 17 16 15 19 19 C 1.46504 * 125.81089 * 180.02562 * 18 17 16 20 20 C 1.53778 * 113.61766 * 194.09311 * 19 18 17 21 21 C 1.53947 * 87.01917 * 220.04614 * 20 19 18 22 22 C 1.53780 * 113.61449 * 96.48209 * 19 18 17 23 23 C 1.34682 * 108.39211 * 359.97438 * 18 17 16 24 24 H 0.97003 * 119.99282 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.44560 * 0.04619 * 10 9 7 26 26 H 1.07996 * 119.24580 * 179.74662 * 11 10 9 27 27 H 1.08003 * 119.67032 * 180.02562 * 13 12 11 28 28 H 1.07992 * 125.94312 * 0.03932 * 16 15 14 29 29 H 1.09004 * 112.84414 * 325.28693 * 19 18 17 30 30 H 1.08996 * 113.61351 * 334.56531 * 20 19 18 31 31 H 1.09001 * 113.61407 * 105.46425 * 20 19 18 32 32 H 1.09008 * 113.53961 * 270.81282 * 21 20 19 33 33 H 1.08998 * 113.74270 * 139.94648 * 21 20 19 34 34 H 1.09000 * 113.61333 * 254.52979 * 22 19 18 35 35 H 1.09000 * 113.61485 * 25.43887 * 22 19 18 36 36 H 1.08002 * 126.31710 * 180.26626 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.4889 2.0462 -1.4002 5 1 1.4388 2.6527 0.6998 6 1 3.5388 1.4401 0.7001 7 6 2.0078 -1.2136 0.0005 8 1 3.0583 -1.2308 -0.2494 9 6 1.3416 -2.4114 0.3271 10 6 0.1830 -2.4051 1.1330 11 6 -0.4261 -3.5895 1.4290 12 7 0.0411 -4.7399 0.9740 13 6 1.1130 -4.8169 0.2133 14 6 1.8112 -3.6667 -0.1490 15 6 3.0155 -3.7499 -1.0026 16 6 3.2712 -2.9924 -2.1659 17 7 4.4341 -3.3523 -2.6371 18 7 4.9714 -4.3438 -1.8084 19 6 6.2634 -5.0089 -1.9944 20 6 6.4325 -6.2764 -1.1402 21 6 7.8852 -5.8256 -0.9028 22 6 7.4002 -4.3898 -1.1642 23 6 4.0994 -4.5818 -0.8101 24 1 -0.4849 0.8401 -0.0004 25 1 -0.2137 -1.4756 1.5138 26 1 -1.3104 -3.5876 2.0490 27 1 1.4543 -5.7811 -0.1333 28 1 2.6183 -2.2450 -2.5919 29 1 6.5180 -5.1529 -3.0445 30 1 5.8228 -6.2786 -0.2367 31 1 6.3491 -7.2016 -1.7105 32 1 8.5837 -6.1941 -1.6541 33 1 8.2345 -5.9896 0.1166 34 1 8.0971 -3.7942 -1.7539 35 1 7.0556 -3.8752 -0.2673 36 1 4.2264 -5.2906 -0.0051 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241724971.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:32 Heat of formation + Delta-G solvation = 102.804780 kcal Electronic energy + Delta-G solvation = -19714.015200 eV Core-core repulsion = 16778.226568 eV Total energy + Delta-G solvation = -2935.788632 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.06182 -40.02820 -39.15875 -35.98773 -33.52698 -32.13494 -31.94521 -29.60785 -27.73650 -26.67635 -26.08381 -23.72160 -23.27940 -21.90770 -21.15606 -19.99012 -19.42705 -18.22644 -17.33983 -16.62941 -16.30602 -16.07794 -15.67374 -15.50432 -15.25629 -14.41045 -14.21363 -14.18983 -13.75351 -13.72541 -13.28507 -13.17725 -13.04784 -12.94653 -12.69426 -12.25602 -11.99972 -11.83295 -11.56389 -11.54060 -11.34896 -11.23889 -10.21677 -10.04497 -9.83644 -9.59673 -8.84203 -8.54354 -6.44860 0.71061 1.03252 1.13343 1.37004 1.48054 1.55514 1.73550 2.11314 2.17237 2.80090 3.33639 3.55808 3.76878 3.82369 3.85799 4.03643 4.08719 4.12541 4.52046 4.58480 4.70557 4.71893 4.82743 4.87098 4.95668 4.98547 5.05765 5.06076 5.13990 5.16615 5.36214 5.42294 5.55437 5.65339 5.83186 6.03227 6.26130 6.32464 6.59609 6.85574 6.89362 6.93961 7.79603 8.25353 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.017177 B = 0.006266 C = 0.004956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.704147 B = 4467.361432 C = 5648.893289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.043 3.957 3 Si 0.973 3.027 4 H -0.263 1.263 5 H -0.262 1.262 6 H -0.264 1.264 7 C -0.458 4.458 8 H 0.075 0.925 9 C 0.113 3.887 10 C -0.229 4.229 11 C 0.073 3.927 12 N -0.588 5.588 13 C 0.110 3.890 14 C -0.185 4.185 15 C -0.163 4.163 16 C 0.057 3.943 17 N -0.334 5.334 18 N -0.357 5.357 19 C 0.119 3.881 20 C -0.139 4.139 21 C -0.118 4.118 22 C -0.152 4.152 23 C 0.049 3.951 24 H 0.292 0.708 25 H 0.114 0.886 26 H 0.139 0.861 27 H 0.145 0.855 28 H 0.167 0.833 29 H 0.125 0.875 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.190 -6.650 -1.478 14.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.175 4.175 3 Si 0.794 3.206 4 H -0.188 1.188 5 H -0.186 1.186 6 H -0.188 1.188 7 C -0.488 4.488 8 H 0.093 0.907 9 C 0.105 3.895 10 C -0.252 4.252 11 C -0.076 4.076 12 N -0.303 5.303 13 C -0.046 4.046 14 C -0.191 4.191 15 C -0.175 4.175 16 C -0.128 4.128 17 N -0.155 5.155 18 N -0.139 5.139 19 C 0.018 3.982 20 C -0.178 4.178 21 C -0.156 4.156 22 C -0.191 4.191 23 C -0.098 4.098 24 H 0.103 0.897 25 H 0.132 0.868 26 H 0.156 0.844 27 H 0.162 0.838 28 H 0.184 0.816 29 H 0.143 0.857 30 H 0.109 0.891 31 H 0.116 0.884 32 H 0.125 0.875 33 H 0.108 0.892 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 13.493 -7.146 -2.200 15.426 hybrid contribution -0.451 1.815 0.345 1.902 sum 13.042 -5.331 -1.855 14.211 Atomic orbital electron populations 1.69798 1.08885 1.30927 1.33817 1.26719 0.95383 1.04210 0.91178 0.85324 0.79151 0.76508 0.79578 1.18766 1.18622 1.18776 1.19581 0.97227 0.91290 1.40713 0.90694 1.18129 0.90922 0.92688 0.87776 1.21883 1.00992 0.98291 1.04025 1.21983 0.98781 0.88524 0.98315 1.67359 1.16282 1.29013 1.17651 1.22465 0.91115 0.96861 0.94195 1.19146 0.99906 0.94056 1.06028 1.18974 0.96819 1.02829 0.98869 1.23864 0.93940 0.99485 0.95515 1.76912 1.11935 1.07908 1.18766 1.48604 1.16236 1.29645 1.19372 1.23423 0.78308 0.94312 1.02152 1.23457 0.98221 0.96150 0.99963 1.22707 0.95433 0.93345 1.04128 1.23442 0.96920 0.98892 0.99806 1.22971 0.89946 1.01807 0.95034 0.89705 0.86832 0.84406 0.83757 0.81576 0.85716 0.89119 0.88393 0.87479 0.89237 0.90106 0.91106 0.78948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.66 10.91 21.86 0.24 -40.43 16 2 C 0.04 2.09 5.22 85.32 0.45 2.53 16 3 Si 0.97 37.67 29.59 68.60 2.03 39.70 16 4 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 5 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 6 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 7 C -0.46 -23.82 7.95 23.38 0.19 -23.63 16 8 H 0.07 3.93 6.78 -2.91 -0.02 3.91 16 9 C 0.11 5.98 5.62 -20.92 -0.12 5.86 16 10 C -0.23 -11.98 8.72 22.56 0.20 -11.79 16 11 C 0.07 3.54 11.09 84.21 0.93 4.47 16 12 N -0.59 -28.42 10.32 -196.19 -2.02 -30.44 16 13 C 0.11 5.05 10.90 84.99 0.93 5.98 16 14 C -0.19 -8.93 5.84 -19.47 -0.11 -9.05 16 15 C -0.16 -6.99 5.04 -20.08 -0.10 -7.09 16 16 C 0.06 2.44 10.49 85.60 0.90 3.34 16 17 N -0.33 -13.21 12.51 -56.33 -0.70 -13.91 16 18 N -0.36 -11.63 3.79 -322.97 -1.22 -12.85 16 19 C 0.12 2.65 5.01 45.52 0.23 2.88 16 20 C -0.14 -2.17 7.45 31.18 0.23 -1.94 16 21 C -0.12 -1.46 8.09 31.18 0.25 -1.21 16 22 C -0.15 -2.93 7.88 31.12 0.25 -2.68 16 23 C 0.05 1.70 10.65 84.19 0.90 2.60 16 24 H 0.29 13.23 8.29 -92.71 -0.77 12.46 16 25 H 0.11 6.07 6.22 -2.91 -0.02 6.05 16 26 H 0.14 5.87 8.06 -2.91 -0.02 5.84 16 27 H 0.15 5.67 8.06 -2.91 -0.02 5.65 16 28 H 0.17 7.41 8.01 -2.91 -0.02 7.39 16 29 H 0.13 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.09 1.50 6.30 -2.39 -0.02 1.49 16 31 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.19 5.38 6.68 -2.91 -0.02 5.36 16 Total: -1.00 -63.02 305.62 4.52 -58.50 By element: Atomic # 1 Polarization: 28.07 SS G_CDS: 1.09 Total: 29.16 kcal Atomic # 6 Polarization: -34.84 SS G_CDS: 5.11 Total: -29.73 kcal Atomic # 7 Polarization: -93.92 SS G_CDS: -3.71 Total: -97.63 kcal Atomic # 14 Polarization: 37.67 SS G_CDS: 2.03 Total: 39.70 kcal Total: -63.02 4.52 -58.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241724971.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.305 kcal (2) G-P(sol) polarization free energy of solvation -63.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds