Wall clock time and date at job start Mon Mar 30 2020 01:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37779 * 119.97976 * 2 1 4 4 C 1.39511 * 119.95111 * 179.97438 * 3 2 1 5 5 C 1.48174 * 120.04843 * 180.02562 * 4 3 2 6 6 C 1.40117 * 119.99715 * 4.97952 * 5 4 3 7 7 N 1.32139 * 120.29060 * 180.02562 * 6 5 4 8 8 C 1.31908 * 120.29765 * 359.72862 * 7 6 5 9 9 C 1.40812 * 119.97469 * 0.52213 * 8 7 6 10 10 C 1.41311 * 120.14460 * 179.75383 * 9 8 7 11 11 H 1.07997 * 119.99585 * 359.50316 * 10 9 8 12 12 C 1.40038 * 120.00319 * 179.50719 * 10 9 8 13 13 N 1.30735 * 120.00084 * 177.97491 * 12 10 9 14 14 Si 1.86802 * 119.99788 * 357.97740 * 12 10 9 15 15 H 1.48499 * 109.47039 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.47097 * 299.99972 * 14 12 10 17 17 H 1.48495 * 109.47464 * 59.99909 * 14 12 10 18 18 N 1.32564 * 119.99057 * 184.99632 * 5 4 3 19 19 C 1.39506 * 119.89818 * 0.27453 * 4 3 2 20 20 C 1.37793 * 119.94970 * 359.48992 * 19 4 3 21 21 C 1.50695 * 119.97378 * 180.25124 * 20 19 4 22 22 C 1.39081 * 120.04635 * 0.49335 * 20 19 4 23 23 N 1.39413 * 119.94710 * 179.74448 * 22 20 19 24 24 H 1.08997 * 109.47071 * 89.99820 * 1 2 3 25 25 H 1.09004 * 109.47402 * 210.00058 * 1 2 3 26 26 H 1.09001 * 109.46773 * 330.00013 * 1 2 3 27 27 H 1.07997 * 120.02178 * 359.97438 * 3 2 1 28 28 H 1.08002 * 119.85098 * 0.04530 * 6 5 4 29 29 H 1.07999 * 120.01523 * 180.27582 * 8 7 6 30 30 H 0.97003 * 119.99660 * 354.82057 * 13 12 10 31 31 H 1.08004 * 120.02698 * 179.70560 * 19 4 3 32 32 H 1.09003 * 109.47343 * 270.23377 * 21 20 19 33 33 H 1.09001 * 109.47225 * 30.23859 * 21 20 19 34 34 H 1.09000 * 109.46633 * 150.23834 * 21 20 19 35 35 H 0.96997 * 119.99842 * 180.02562 * 23 22 20 36 36 H 0.96997 * 119.99760 * 0.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.1934 0.0000 4 6 3.5906 1.1927 0.0005 5 6 4.3332 2.4750 0.0011 6 6 3.6381 3.6870 0.1064 7 7 4.2944 4.8339 0.1070 8 6 5.6102 4.8477 0.0139 9 6 6.3203 3.6369 -0.0979 10 6 7.7294 3.6477 -0.2032 11 1 8.2634 4.5864 -0.2061 12 6 8.4334 2.4413 -0.3038 13 7 9.7335 2.4527 -0.4410 14 14 7.5148 0.8160 -0.2420 15 1 8.4817 -0.3041 -0.3679 16 1 6.7937 0.7038 1.0514 17 1 6.5389 0.7561 -1.3596 18 7 5.6551 2.4752 -0.0984 19 6 4.2854 -0.0170 -0.0047 20 6 3.5927 -1.2081 0.0002 21 6 4.3427 -2.5152 0.0003 22 6 2.2019 -1.2049 0.0000 23 7 1.5031 -2.4113 -0.0004 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6555 2.1287 -0.0004 28 1 2.5611 3.6838 0.1878 29 1 6.1423 5.7874 0.0193 30 1 10.2025 3.2949 -0.5486 31 1 5.3654 -0.0199 -0.0091 32 1 4.5235 -2.8304 -1.0274 33 1 5.2954 -2.3874 0.5142 34 1 3.7515 -3.2732 0.5141 35 1 0.5332 -2.4099 -0.0009 36 1 1.9870 -3.2520 -0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241882276.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:54 Heat of formation + Delta-G solvation = 42.039468 kcal Electronic energy + Delta-G solvation = -19884.613781 eV Core-core repulsion = 16946.190167 eV Total energy + Delta-G solvation = -2938.423614 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.89417 -38.96325 -34.91887 -34.19334 -33.48206 -32.52613 -31.15996 -29.03568 -26.92416 -26.58453 -25.55617 -23.40083 -22.03088 -20.58032 -19.92262 -18.53957 -17.17830 -17.14017 -15.91880 -15.69223 -15.13021 -14.21739 -14.17995 -13.92857 -13.44359 -13.33969 -13.25363 -13.09837 -12.77929 -12.60669 -12.32925 -11.85918 -11.72705 -11.58207 -11.12609 -11.08266 -11.05459 -10.71026 -10.50371 -9.73412 -9.60628 -9.40193 -9.10526 -8.29542 -8.27151 -7.76035 -7.22896 -6.96749 -4.96293 1.39711 1.70980 2.49419 2.72946 3.44243 3.57701 3.86857 3.92282 4.11769 4.26978 4.61571 4.91627 4.95672 5.06589 5.36784 5.44966 5.47613 5.56773 5.62543 5.68774 5.75324 5.78011 5.82350 5.94239 6.02194 6.17697 6.26533 6.46043 6.55225 6.59211 6.76230 6.86826 7.10741 7.13932 7.26327 7.31340 7.59240 7.77664 7.86258 8.04640 8.39256 8.84067 9.32105 9.82949 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.020361 B = 0.007208 C = 0.005349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.869988 B = 3883.790883 C = 5233.454453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.171 4.171 3 C -0.054 4.054 4 C -0.082 4.082 5 C 0.183 3.817 6 C -0.109 4.109 7 N -0.419 5.419 8 C -0.049 4.049 9 C 0.205 3.795 10 C -0.453 4.453 11 H 0.089 0.911 12 C 0.041 3.959 13 N -0.792 5.792 14 Si 1.145 2.855 15 H -0.327 1.327 16 H -0.283 1.283 17 H -0.277 1.277 18 N -0.543 5.543 19 C -0.049 4.049 20 C -0.171 4.171 21 C -0.105 4.105 22 C 0.220 3.780 23 N -0.878 5.878 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.127 0.873 28 H 0.136 0.864 29 H 0.139 0.861 30 H 0.286 0.714 31 H 0.131 0.869 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.394 0.606 36 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.116 -9.866 0.485 16.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.176 4.176 3 C -0.074 4.074 4 C -0.086 4.086 5 C 0.040 3.960 6 C -0.266 4.266 7 N -0.129 5.129 8 C -0.220 4.220 9 C 0.080 3.920 10 C -0.485 4.485 11 H 0.107 0.893 12 C -0.182 4.182 13 N -0.413 5.413 14 Si 0.981 3.019 15 H -0.261 1.261 16 H -0.212 1.212 17 H -0.206 1.206 18 N -0.267 5.267 19 C -0.068 4.068 20 C -0.175 4.175 21 C -0.162 4.162 22 C 0.115 3.885 23 N -0.419 5.419 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.145 0.855 28 H 0.154 0.846 29 H 0.156 0.844 30 H 0.098 0.902 31 H 0.148 0.852 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.224 0.776 36 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -12.777 -11.316 0.486 17.075 hybrid contribution -0.158 1.700 -0.011 1.708 sum -12.936 -9.616 0.475 16.125 Atomic orbital electron populations 1.20531 0.91466 1.02014 1.01583 1.19139 0.95415 0.91481 1.11557 1.20837 0.92730 0.97051 0.96755 1.18374 0.92246 0.91505 1.06459 1.20270 0.90306 0.92560 0.92889 1.22448 0.99126 0.87925 1.17099 1.67663 1.09572 1.29325 1.06373 1.23095 0.89966 0.97939 1.11033 1.19402 0.94828 0.88129 0.89664 1.20805 0.90243 0.96754 1.40737 0.89278 1.27868 0.95036 1.06491 0.88779 1.70641 1.08742 1.32729 1.29205 0.82259 0.70317 0.69828 0.79512 1.26072 1.21216 1.20566 1.67137 1.07097 1.27820 1.24613 1.21416 1.00708 0.90526 0.94191 1.19275 0.91429 0.95792 1.11019 1.20597 0.99919 0.93778 1.01915 1.17407 0.90459 0.86020 0.94583 1.42523 1.08701 1.05240 1.85474 0.91932 0.92607 0.91545 0.85528 0.84627 0.84368 0.90224 0.85152 0.91614 0.91330 0.92412 0.77650 0.77541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.00 9.56 36.01 0.34 -0.66 16 2 C -0.17 -2.42 5.89 -104.47 -0.62 -3.03 16 3 C -0.05 -0.90 9.06 -39.28 -0.36 -1.25 16 4 C -0.08 -1.68 5.88 -104.87 -0.62 -2.29 16 5 C 0.18 4.30 6.73 -82.77 -0.56 3.74 16 6 C -0.11 -2.46 10.61 -16.71 -0.18 -2.64 16 7 N -0.42 -10.06 10.47 -12.04 -0.13 -10.18 16 8 C -0.05 -1.21 10.97 -16.55 -0.18 -1.39 16 9 C 0.20 5.40 6.42 -84.84 -0.54 4.86 16 10 C -0.45 -12.11 9.59 -37.74 -0.36 -12.47 16 11 H 0.09 2.32 8.06 -52.49 -0.42 1.90 16 12 C 0.04 1.10 5.52 -17.34 -0.10 1.00 16 13 N -0.79 -21.08 13.65 55.55 0.76 -20.32 16 14 Si 1.14 28.11 22.22 -169.99 -3.78 24.33 16 15 H -0.33 -7.82 7.11 56.52 0.40 -7.42 16 16 H -0.28 -6.95 6.65 56.52 0.38 -6.58 16 17 H -0.28 -6.82 6.47 56.52 0.37 -6.45 16 18 N -0.54 -14.11 4.31 -7.51 -0.03 -14.14 16 19 C -0.05 -0.98 9.11 -39.27 -0.36 -1.34 16 20 C -0.17 -2.74 5.89 -104.47 -0.62 -3.36 16 21 C -0.11 -1.34 9.56 36.00 0.34 -0.99 16 22 C 0.22 3.07 6.72 -83.78 -0.56 2.50 16 23 N -0.88 -8.53 8.87 32.43 0.29 -8.24 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.46 6.54 -51.93 -0.34 0.12 16 26 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 27 H 0.13 1.87 6.21 -52.49 -0.33 1.55 16 28 H 0.14 2.59 6.21 -52.49 -0.33 2.26 16 29 H 0.14 3.09 8.06 -52.49 -0.42 2.67 16 30 H 0.29 7.21 8.72 -40.82 -0.36 6.85 16 31 H 0.13 2.82 2.57 -52.48 -0.14 2.69 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.90 8.09 -51.93 -0.42 0.48 16 34 H 0.06 0.57 6.54 -51.93 -0.34 0.23 16 35 H 0.39 3.01 6.80 -40.82 -0.28 2.73 16 36 H 0.40 3.20 6.80 -40.82 -0.28 2.92 16 LS Contribution 290.23 15.07 4.37 4.37 Total: -1.00 -30.22 290.23 -6.63 -36.85 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -3.77 Total: 4.66 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -4.35 Total: -17.32 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: 0.89 Total: -52.89 kcal Atomic # 14 Polarization: 28.11 SS G_CDS: -3.78 Total: 24.33 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.22 -6.63 -36.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241882276.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.889 kcal (2) G-P(sol) polarization free energy of solvation -30.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds