Wall clock time and date at job start Mon Mar 30 2020 01:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37779 * 119.97976 * 2 1 4 4 C 1.39511 * 119.95111 * 179.97438 * 3 2 1 5 5 C 1.48174 * 120.04843 * 180.02562 * 4 3 2 6 6 C 1.40117 * 119.99715 * 4.97952 * 5 4 3 7 7 N 1.32139 * 120.29060 * 180.02562 * 6 5 4 8 8 C 1.31908 * 120.29765 * 359.72862 * 7 6 5 9 9 C 1.40812 * 119.97469 * 0.52213 * 8 7 6 10 10 C 1.41311 * 120.14460 * 179.75383 * 9 8 7 11 11 H 1.07997 * 119.99585 * 359.50316 * 10 9 8 12 12 C 1.40038 * 120.00319 * 179.50719 * 10 9 8 13 13 N 1.30735 * 120.00084 * 177.97491 * 12 10 9 14 14 Si 1.86802 * 119.99788 * 357.97740 * 12 10 9 15 15 H 1.48499 * 109.47039 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.47097 * 299.99972 * 14 12 10 17 17 H 1.48495 * 109.47464 * 59.99909 * 14 12 10 18 18 N 1.32564 * 119.99057 * 184.99632 * 5 4 3 19 19 C 1.39506 * 119.89818 * 0.27453 * 4 3 2 20 20 C 1.37793 * 119.94970 * 359.48992 * 19 4 3 21 21 C 1.50695 * 119.97378 * 180.25124 * 20 19 4 22 22 C 1.39081 * 120.04635 * 0.49335 * 20 19 4 23 23 N 1.39413 * 119.94710 * 179.74448 * 22 20 19 24 24 H 1.08997 * 109.47071 * 89.99820 * 1 2 3 25 25 H 1.09004 * 109.47402 * 210.00058 * 1 2 3 26 26 H 1.09001 * 109.46773 * 330.00013 * 1 2 3 27 27 H 1.07997 * 120.02178 * 359.97438 * 3 2 1 28 28 H 1.08002 * 119.85098 * 0.04530 * 6 5 4 29 29 H 1.07999 * 120.01523 * 180.27582 * 8 7 6 30 30 H 0.97003 * 119.99660 * 354.82057 * 13 12 10 31 31 H 1.08004 * 120.02698 * 179.70560 * 19 4 3 32 32 H 1.09003 * 109.47343 * 270.23377 * 21 20 19 33 33 H 1.09001 * 109.47225 * 30.23859 * 21 20 19 34 34 H 1.09000 * 109.46633 * 150.23834 * 21 20 19 35 35 H 0.96997 * 119.99842 * 180.02562 * 23 22 20 36 36 H 0.96997 * 119.99760 * 0.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.1934 0.0000 4 6 3.5906 1.1927 0.0005 5 6 4.3332 2.4750 0.0011 6 6 3.6381 3.6870 0.1064 7 7 4.2944 4.8339 0.1070 8 6 5.6102 4.8477 0.0139 9 6 6.3203 3.6369 -0.0979 10 6 7.7294 3.6477 -0.2032 11 1 8.2634 4.5864 -0.2061 12 6 8.4334 2.4413 -0.3038 13 7 9.7335 2.4527 -0.4410 14 14 7.5148 0.8160 -0.2420 15 1 8.4817 -0.3041 -0.3679 16 1 6.7937 0.7038 1.0514 17 1 6.5389 0.7561 -1.3596 18 7 5.6551 2.4752 -0.0984 19 6 4.2854 -0.0170 -0.0047 20 6 3.5927 -1.2081 0.0002 21 6 4.3427 -2.5152 0.0003 22 6 2.2019 -1.2049 0.0000 23 7 1.5031 -2.4113 -0.0004 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6555 2.1287 -0.0004 28 1 2.5611 3.6838 0.1878 29 1 6.1423 5.7874 0.0193 30 1 10.2025 3.2949 -0.5486 31 1 5.3654 -0.0199 -0.0091 32 1 4.5235 -2.8304 -1.0274 33 1 5.2954 -2.3874 0.5142 34 1 3.7515 -3.2732 0.5141 35 1 0.5332 -2.4099 -0.0009 36 1 1.9870 -3.2520 -0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241882276.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:54 Heat of formation + Delta-G solvation = 21.830663 kcal Electronic energy + Delta-G solvation = -19885.490100 eV Core-core repulsion = 16946.190167 eV Total energy + Delta-G solvation = -2939.299933 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.47562 -40.44361 -36.37932 -35.98415 -34.64870 -34.26095 -32.75504 -30.33185 -28.38413 -27.66908 -27.20965 -25.06596 -23.79513 -21.78494 -21.42594 -20.49393 -18.51568 -18.36659 -17.53734 -17.33536 -16.77162 -15.82872 -15.56263 -15.16913 -15.01787 -14.93948 -14.79843 -14.39408 -13.97386 -13.93741 -13.61870 -13.24726 -13.10591 -12.93993 -12.75020 -12.72337 -12.30905 -12.09147 -11.96269 -11.60870 -11.48906 -11.26723 -11.00514 -10.01599 -9.75092 -9.50809 -9.19032 -8.17921 -6.97951 -0.15824 0.47912 0.57909 1.10085 1.44841 1.60620 1.90142 2.31552 2.51622 2.89538 3.01975 3.41702 3.52812 3.83069 3.88090 3.93027 4.09825 4.31484 4.41125 4.47579 4.55117 4.64326 4.75729 4.79385 4.80411 4.92901 4.93281 5.01279 5.22862 5.24823 5.37119 5.39555 5.42741 5.56275 5.71203 5.89727 5.95216 6.10751 6.40040 6.57930 6.93580 7.02824 7.41133 7.80867 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.020361 B = 0.007208 C = 0.005349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.869988 B = 3883.790883 C = 5233.454453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.169 4.169 3 C -0.051 4.051 4 C -0.126 4.126 5 C 0.173 3.827 6 C -0.099 4.099 7 N -0.423 5.423 8 C -0.069 4.069 9 C 0.192 3.808 10 C -0.482 4.482 11 H 0.084 0.916 12 C 0.018 3.982 13 N -0.812 5.812 14 Si 1.179 2.821 15 H -0.321 1.321 16 H -0.292 1.292 17 H -0.286 1.286 18 N -0.563 5.563 19 C -0.079 4.079 20 C -0.181 4.181 21 C -0.108 4.108 22 C 0.235 3.765 23 N -0.854 5.854 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.143 0.857 28 H 0.175 0.825 29 H 0.153 0.847 30 H 0.288 0.712 31 H 0.104 0.896 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.090 0.910 35 H 0.410 0.590 36 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.108 -12.059 0.616 20.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.174 4.174 3 C -0.071 4.071 4 C -0.129 4.129 5 C 0.031 3.969 6 C -0.256 4.256 7 N -0.134 5.134 8 C -0.237 4.237 9 C 0.066 3.934 10 C -0.515 4.515 11 H 0.102 0.898 12 C -0.202 4.202 13 N -0.434 5.434 14 Si 1.014 2.986 15 H -0.254 1.254 16 H -0.222 1.222 17 H -0.215 1.215 18 N -0.287 5.287 19 C -0.098 4.098 20 C -0.186 4.186 21 C -0.164 4.164 22 C 0.127 3.873 23 N -0.396 5.396 24 H 0.095 0.905 25 H 0.097 0.903 26 H 0.094 0.906 27 H 0.161 0.839 28 H 0.192 0.808 29 H 0.170 0.830 30 H 0.099 0.901 31 H 0.121 0.879 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.109 0.891 35 H 0.242 0.758 36 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -16.775 -13.524 0.616 21.557 hybrid contribution 0.725 2.232 -0.036 2.347 sum -16.050 -11.292 0.580 19.633 Atomic orbital electron populations 1.20637 0.88095 1.03757 1.03002 1.19581 0.97674 0.90521 1.09575 1.21015 0.91099 0.98927 0.96021 1.18415 0.93766 0.90060 1.10696 1.20956 0.89694 0.94820 0.91433 1.23129 1.00869 0.87196 1.14442 1.67739 1.09176 1.30017 1.06426 1.23249 0.90439 0.98020 1.12009 1.19604 0.94994 0.89128 0.89669 1.20805 0.90817 0.96672 1.43248 0.89816 1.28401 0.95357 1.07808 0.88604 1.70639 1.08815 1.32889 1.31031 0.81785 0.69331 0.68685 0.78753 1.25443 1.22189 1.21482 1.67110 1.08680 1.27783 1.25082 1.21363 0.99754 0.92194 0.96526 1.19527 0.92719 0.95691 1.10644 1.20693 0.99717 0.93078 1.02951 1.17490 0.89877 0.87595 0.92329 1.42498 1.09590 1.04297 1.83254 0.90498 0.90263 0.90599 0.83924 0.80793 0.83000 0.90073 0.87861 0.90554 0.92459 0.89134 0.75818 0.76161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.45 9.56 71.24 0.68 -0.77 16 2 C -0.17 -4.08 5.89 -19.77 -0.12 -4.19 16 3 C -0.05 -1.55 9.06 22.47 0.20 -1.35 16 4 C -0.13 -5.04 5.88 -20.02 -0.12 -5.15 16 5 C 0.17 8.17 6.73 42.13 0.28 8.46 16 6 C -0.10 -4.32 10.61 85.10 0.90 -3.42 16 7 N -0.42 -20.07 10.47 -192.00 -2.01 -22.08 16 8 C -0.07 -3.47 10.97 85.31 0.94 -2.53 16 9 C 0.19 10.47 6.42 40.22 0.26 10.73 16 10 C -0.48 -27.01 9.59 23.46 0.23 -26.78 16 11 H 0.08 4.60 8.06 -2.91 -0.02 4.58 16 12 C 0.02 0.98 5.52 85.29 0.47 1.45 16 13 N -0.81 -44.75 13.65 21.84 0.30 -44.45 16 14 Si 1.18 59.78 22.22 68.60 1.52 61.31 16 15 H -0.32 -15.56 7.11 99.48 0.71 -14.85 16 16 H -0.29 -14.99 6.65 99.48 0.66 -14.33 16 17 H -0.29 -14.65 6.47 99.48 0.64 -14.00 16 18 N -0.56 -30.01 4.31 -177.68 -0.77 -30.77 16 19 C -0.08 -3.14 9.11 22.47 0.20 -2.93 16 20 C -0.18 -5.45 5.89 -19.77 -0.12 -5.57 16 21 C -0.11 -2.49 9.56 71.23 0.68 -1.81 16 22 C 0.23 5.64 6.72 38.34 0.26 5.89 16 23 N -0.85 -12.09 8.87 -51.32 -0.46 -12.55 16 24 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.08 0.82 6.54 -2.39 -0.02 0.80 16 26 H 0.08 1.04 8.08 -2.39 -0.02 1.02 16 27 H 0.14 3.72 6.21 -2.91 -0.02 3.70 16 28 H 0.18 6.12 6.21 -2.91 -0.02 6.10 16 29 H 0.15 6.97 8.06 -2.91 -0.02 6.95 16 30 H 0.29 15.13 8.72 -92.71 -0.81 14.32 16 31 H 0.10 4.60 2.57 -2.91 -0.01 4.60 16 32 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.06 1.45 8.09 -2.39 -0.02 1.43 16 34 H 0.09 1.43 6.54 -2.39 -0.02 1.41 16 35 H 0.41 3.77 6.80 -92.71 -0.63 3.14 16 36 H 0.41 4.39 6.80 -92.71 -0.63 3.76 16 Total: -1.00 -68.46 290.23 3.09 -65.37 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -0.26 Total: 11.17 kcal Atomic # 6 Polarization: -32.74 SS G_CDS: 4.75 Total: -27.99 kcal Atomic # 7 Polarization: -106.92 SS G_CDS: -2.93 Total: -109.86 kcal Atomic # 14 Polarization: 59.78 SS G_CDS: 1.52 Total: 61.31 kcal Total: -68.46 3.09 -65.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241882276.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.198 kcal (2) G-P(sol) polarization free energy of solvation -68.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds