Wall clock time and date at job start Mon Mar 30 2020 01:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37612 * 119.96238 * 2 1 4 4 C 1.39877 * 119.92477 * 180.02562 * 3 2 1 5 5 C 1.47574 * 120.07679 * 179.97438 * 4 3 2 6 6 N 1.33061 * 120.55004 * 224.43489 * 5 4 3 7 7 C 1.31897 * 120.02972 * 179.97438 * 6 5 4 8 8 C 1.39028 * 121.22779 * 0.02562 * 7 6 5 9 9 N 1.31525 * 121.14595 * 0.02562 * 8 7 6 10 10 C 1.34097 * 119.85974 * 359.97438 * 9 8 7 11 11 C 1.40696 * 120.58082 * 179.97438 * 10 9 8 12 12 H 1.08004 * 120.00271 * 175.63736 * 11 10 9 13 13 C 1.40143 * 120.00244 * 355.63714 * 11 10 9 14 14 N 1.30699 * 119.99608 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00021 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47116 * 90.00552 * 15 13 11 17 17 H 1.48506 * 109.46762 * 210.00222 * 15 13 11 18 18 H 1.48499 * 109.47144 * 330.00112 * 15 13 11 19 19 C 1.39881 * 119.84937 * 0.24665 * 4 3 2 20 20 C 1.37610 * 119.92077 * 359.52220 * 19 4 3 21 21 C 1.50702 * 119.96190 * 180.22843 * 20 19 4 22 22 C 1.39239 * 119.96199 * 180.02562 * 2 1 3 23 23 N 1.39168 * 119.92468 * 359.97438 * 22 2 1 24 24 H 1.09001 * 109.46786 * 89.99560 * 1 2 3 25 25 H 1.08997 * 109.47489 * 210.00033 * 1 2 3 26 26 H 1.09002 * 109.47142 * 330.00125 * 1 2 3 27 27 H 1.08009 * 120.04260 * 359.97438 * 3 2 1 28 28 H 1.08005 * 119.38530 * 180.02562 * 7 6 5 29 29 H 1.07998 * 119.42795 * 180.27956 * 8 7 6 30 30 H 0.97000 * 120.00142 * 179.97438 * 14 13 11 31 31 H 1.08001 * 120.04200 * 179.72744 * 19 4 3 32 32 H 1.09000 * 109.47015 * 270.22829 * 21 20 19 33 33 H 1.08996 * 109.47315 * 30.23148 * 21 20 19 34 34 H 1.09004 * 109.47334 * 150.23209 * 21 20 19 35 35 H 0.97001 * 120.00368 * 359.97438 * 23 22 2 36 36 H 0.97004 * 120.00448 * 180.02562 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.1922 0.0000 4 6 3.5930 1.1913 -0.0005 5 6 4.3335 2.4678 -0.0011 6 7 5.3803 2.6422 -0.8038 7 6 6.0343 3.7875 -0.7963 8 6 5.6525 4.8301 0.0405 9 7 4.6258 4.7087 0.8535 10 6 3.9289 3.5634 0.8825 11 6 2.8284 3.4169 1.7467 12 1 2.2308 2.5179 1.7126 13 6 2.5074 4.4375 2.6519 14 7 3.2301 5.5257 2.6929 15 14 1.0458 4.2432 3.7988 16 1 1.4900 3.6022 5.0625 17 1 0.4698 5.5791 4.0972 18 1 0.0156 3.3941 3.1484 19 6 4.2885 -0.0224 -0.0063 20 6 3.5949 -1.2109 -0.0015 21 6 4.3432 -2.5190 -0.0025 22 6 2.2024 -1.2063 -0.0005 23 7 1.5042 -2.4102 -0.0005 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6543 2.1276 -0.0004 28 1 6.8823 3.9179 -1.4524 29 1 6.2061 5.7572 0.0196 30 1 3.0078 6.2323 3.3191 31 1 5.3685 -0.0267 -0.0112 32 1 4.5229 -2.8340 -1.0304 33 1 5.2964 -2.3927 0.5107 34 1 3.7515 -3.2766 0.5115 35 1 0.5342 -2.4083 0.0002 36 1 1.9875 -3.2512 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241883088.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:56 Heat of formation + Delta-G solvation = 53.740591 kcal Electronic energy + Delta-G solvation = -19910.669937 eV Core-core repulsion = 16972.753722 eV Total energy + Delta-G solvation = -2937.916215 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.35969 -38.34325 -34.41891 -34.13581 -33.10684 -31.94904 -30.62866 -28.69256 -26.62976 -26.19332 -25.63326 -22.77058 -21.85009 -20.31309 -19.74790 -17.66880 -16.87853 -16.49936 -15.81975 -15.19944 -14.84989 -14.16803 -13.86313 -13.67105 -13.29252 -12.93486 -12.87917 -12.70671 -12.52360 -12.33097 -11.92949 -11.60194 -11.46332 -11.44639 -11.38344 -11.00683 -10.52456 -10.39377 -10.21636 -9.94854 -9.74980 -9.51681 -9.05944 -7.90190 -7.81092 -7.41097 -6.71724 -6.50511 -4.67327 1.99536 2.09525 2.61500 2.98166 3.00947 3.02477 3.27510 3.78771 4.24059 4.48355 4.63832 5.26310 5.35075 5.42194 5.65018 5.74877 5.82170 5.86467 5.93223 5.97692 6.02954 6.07864 6.18672 6.23386 6.30521 6.53960 6.59619 6.77329 6.81979 6.93616 6.96121 7.09284 7.28609 7.51517 7.57775 7.73196 7.97620 8.03905 8.07777 8.37021 8.66075 9.29701 9.86148 10.04553 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.015094 B = 0.007820 C = 0.005589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.547535 B = 3579.911956 C = 5008.428981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.168 4.168 3 C -0.062 4.062 4 C -0.021 4.021 5 C -0.018 4.018 6 N -0.415 5.415 7 C -0.130 4.130 8 C 0.087 3.913 9 N -0.463 5.463 10 C 0.220 3.780 11 C -0.398 4.398 12 H 0.103 0.897 13 C 0.063 3.937 14 N -0.702 5.702 15 Si 0.910 3.090 16 H -0.265 1.265 17 H -0.273 1.273 18 H -0.256 1.256 19 C -0.063 4.063 20 C -0.171 4.171 21 C -0.097 4.097 22 C 0.199 3.801 23 N -0.883 5.883 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.129 0.871 28 H 0.123 0.877 29 H 0.126 0.874 30 H 0.279 0.721 31 H 0.115 0.885 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.391 0.609 36 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.735 -9.967 -1.285 11.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.172 4.172 3 C -0.082 4.082 4 C -0.024 4.024 5 C -0.168 4.168 6 N -0.127 5.127 7 C -0.289 4.289 8 C -0.082 4.082 9 N -0.179 5.179 10 C 0.094 3.906 11 C -0.428 4.428 12 H 0.121 0.879 13 C -0.165 4.165 14 N -0.321 5.321 15 Si 0.733 3.267 16 H -0.190 1.190 17 H -0.198 1.198 18 H -0.179 1.179 19 C -0.082 4.082 20 C -0.175 4.175 21 C -0.154 4.154 22 C 0.096 3.904 23 N -0.425 5.425 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.147 0.853 28 H 0.141 0.859 29 H 0.143 0.857 30 H 0.090 0.910 31 H 0.133 0.867 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.220 0.780 36 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -4.632 -9.614 -1.175 10.736 hybrid contribution -0.521 -0.130 0.519 0.747 sum -5.153 -9.744 -0.655 11.042 Atomic orbital electron populations 1.20528 0.92082 1.01829 1.01191 1.19134 0.95084 0.91670 1.11344 1.21035 0.93419 0.96893 0.96808 1.18030 0.91787 0.90867 1.01726 1.21273 0.98262 0.94863 1.02366 1.67756 1.04604 1.22366 1.17964 1.22343 1.05449 0.93044 1.08073 1.23351 0.94719 0.97744 0.92415 1.69566 1.06233 1.22429 1.19711 1.20387 0.92426 0.86949 0.90826 1.19925 1.08393 1.02290 1.12198 0.87879 1.26259 0.97855 0.94571 0.97770 1.70083 1.32015 1.03608 1.26427 0.86262 0.81028 0.78992 0.80457 1.19031 1.19821 1.17908 1.20838 0.99060 0.90532 0.97797 1.19110 0.91368 0.95360 1.11709 1.20499 0.99504 0.94248 1.01127 1.17311 0.90421 0.85808 0.96856 1.42378 1.08443 1.05168 1.86533 0.92309 0.92914 0.91570 0.85274 0.85937 0.85683 0.90994 0.86677 0.92348 0.91956 0.92925 0.77975 0.78047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.36 9.56 36.01 0.34 -1.01 16 2 C -0.17 -2.91 5.89 -104.48 -0.62 -3.53 16 3 C -0.06 -1.27 7.24 -39.20 -0.28 -1.55 16 4 C -0.02 -0.47 5.41 -104.86 -0.57 -1.04 16 5 C -0.02 -0.46 6.54 -80.22 -0.52 -0.98 16 6 N -0.42 -10.55 10.33 -7.86 -0.08 -10.63 16 7 C -0.13 -3.10 11.17 -17.23 -0.19 -3.29 16 8 C 0.09 2.12 11.17 -17.39 -0.19 1.93 16 9 N -0.46 -12.72 8.08 -9.56 -0.08 -12.80 16 10 C 0.22 5.98 6.67 -82.64 -0.55 5.43 16 11 C -0.40 -10.20 8.01 -37.94 -0.30 -10.50 16 12 H 0.10 2.48 4.87 -52.48 -0.26 2.22 16 13 C 0.06 1.54 5.50 -17.32 -0.10 1.44 16 14 N -0.70 -17.94 11.51 55.56 0.64 -17.30 16 15 Si 0.91 17.75 29.56 -169.99 -5.03 12.72 16 16 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 17 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 18 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 19 C -0.06 -1.27 9.32 -39.20 -0.37 -1.63 16 20 C -0.17 -2.92 5.89 -104.47 -0.62 -3.54 16 21 C -0.10 -1.27 9.56 36.01 0.34 -0.92 16 22 C 0.20 3.22 6.72 -83.78 -0.56 2.65 16 23 N -0.88 -10.46 8.86 32.44 0.29 -10.17 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.60 6.54 -51.93 -0.34 0.26 16 26 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 27 H 0.13 2.72 6.68 -52.48 -0.35 2.37 16 28 H 0.12 2.53 8.06 -52.48 -0.42 2.10 16 29 H 0.13 2.63 8.06 -52.49 -0.42 2.21 16 30 H 0.28 6.40 8.29 -40.82 -0.34 6.06 16 31 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.80 8.08 -51.93 -0.42 0.38 16 34 H 0.05 0.58 6.54 -51.93 -0.34 0.24 16 35 H 0.39 3.93 6.80 -40.82 -0.28 3.65 16 36 H 0.39 3.88 6.80 -40.82 -0.28 3.60 16 LS Contribution 301.47 15.07 4.54 4.54 Total: -1.00 -30.23 301.47 -7.82 -38.06 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -3.93 Total: 12.11 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -4.18 Total: -16.54 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: 0.77 Total: -50.90 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.03 Total: 12.72 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.23 -7.82 -38.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241883088.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.797 kcal (2) G-P(sol) polarization free energy of solvation -30.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds