Wall clock time and date at job start Mon Mar 30 2020 01:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37612 * 119.96238 * 2 1 4 4 C 1.39877 * 119.92477 * 180.02562 * 3 2 1 5 5 C 1.47574 * 120.07679 * 179.97438 * 4 3 2 6 6 N 1.33061 * 120.55004 * 224.43489 * 5 4 3 7 7 C 1.31897 * 120.02972 * 179.97438 * 6 5 4 8 8 C 1.39028 * 121.22779 * 0.02562 * 7 6 5 9 9 N 1.31525 * 121.14595 * 0.02562 * 8 7 6 10 10 C 1.34097 * 119.85974 * 359.97438 * 9 8 7 11 11 C 1.40696 * 120.58082 * 179.97438 * 10 9 8 12 12 H 1.08004 * 120.00271 * 175.63736 * 11 10 9 13 13 C 1.40143 * 120.00244 * 355.63714 * 11 10 9 14 14 N 1.30699 * 119.99608 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00021 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47116 * 90.00552 * 15 13 11 17 17 H 1.48506 * 109.46762 * 210.00222 * 15 13 11 18 18 H 1.48499 * 109.47144 * 330.00112 * 15 13 11 19 19 C 1.39881 * 119.84937 * 0.24665 * 4 3 2 20 20 C 1.37610 * 119.92077 * 359.52220 * 19 4 3 21 21 C 1.50702 * 119.96190 * 180.22843 * 20 19 4 22 22 C 1.39239 * 119.96199 * 180.02562 * 2 1 3 23 23 N 1.39168 * 119.92468 * 359.97438 * 22 2 1 24 24 H 1.09001 * 109.46786 * 89.99560 * 1 2 3 25 25 H 1.08997 * 109.47489 * 210.00033 * 1 2 3 26 26 H 1.09002 * 109.47142 * 330.00125 * 1 2 3 27 27 H 1.08009 * 120.04260 * 359.97438 * 3 2 1 28 28 H 1.08005 * 119.38530 * 180.02562 * 7 6 5 29 29 H 1.07998 * 119.42795 * 180.27956 * 8 7 6 30 30 H 0.97000 * 120.00142 * 179.97438 * 14 13 11 31 31 H 1.08001 * 120.04200 * 179.72744 * 19 4 3 32 32 H 1.09000 * 109.47015 * 270.22829 * 21 20 19 33 33 H 1.08996 * 109.47315 * 30.23148 * 21 20 19 34 34 H 1.09004 * 109.47334 * 150.23209 * 21 20 19 35 35 H 0.97001 * 120.00368 * 359.97438 * 23 22 2 36 36 H 0.97004 * 120.00448 * 180.02562 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.1922 0.0000 4 6 3.5930 1.1913 -0.0005 5 6 4.3335 2.4678 -0.0011 6 7 5.3803 2.6422 -0.8038 7 6 6.0343 3.7875 -0.7963 8 6 5.6525 4.8301 0.0405 9 7 4.6258 4.7087 0.8535 10 6 3.9289 3.5634 0.8825 11 6 2.8284 3.4169 1.7467 12 1 2.2308 2.5179 1.7126 13 6 2.5074 4.4375 2.6519 14 7 3.2301 5.5257 2.6929 15 14 1.0458 4.2432 3.7988 16 1 1.4900 3.6022 5.0625 17 1 0.4698 5.5791 4.0972 18 1 0.0156 3.3941 3.1484 19 6 4.2885 -0.0224 -0.0063 20 6 3.5949 -1.2109 -0.0015 21 6 4.3432 -2.5190 -0.0025 22 6 2.2024 -1.2063 -0.0005 23 7 1.5042 -2.4102 -0.0005 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6543 2.1276 -0.0004 28 1 6.8823 3.9179 -1.4524 29 1 6.2061 5.7572 0.0196 30 1 3.0078 6.2323 3.3191 31 1 5.3685 -0.0267 -0.0112 32 1 4.5229 -2.8340 -1.0304 33 1 5.2964 -2.3927 0.5107 34 1 3.7515 -3.2766 0.5115 35 1 0.5342 -2.4083 0.0002 36 1 1.9875 -3.2512 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241883088.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:56 Heat of formation + Delta-G solvation = 34.546073 kcal Electronic energy + Delta-G solvation = -19911.502274 eV Core-core repulsion = 16972.753722 eV Total energy + Delta-G solvation = -2938.748552 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.91815 -40.03532 -36.02092 -35.78911 -34.38856 -33.78916 -32.25540 -30.13601 -28.25720 -27.52149 -27.17080 -24.49347 -23.73224 -21.64666 -21.32372 -19.53670 -18.20199 -17.84202 -17.50656 -16.87258 -16.66733 -15.86676 -15.19916 -14.95605 -14.70923 -14.54838 -14.44793 -13.99127 -13.91323 -13.75728 -13.36869 -13.23692 -13.02154 -12.72143 -12.66408 -12.48148 -12.04158 -11.90273 -11.77432 -11.62449 -11.47300 -11.34413 -10.89606 -9.62848 -9.31807 -9.29768 -8.42844 -8.02698 -6.58057 0.32017 0.65811 0.87653 1.33437 1.37555 1.52451 1.55358 2.16023 2.75007 3.03721 3.17361 3.79344 3.84636 4.05984 4.07978 4.20855 4.39919 4.53215 4.57019 4.58987 4.75403 4.78551 4.87013 4.88751 4.93512 5.04109 5.06581 5.13797 5.22263 5.34840 5.48867 5.61258 5.73080 5.88683 6.03676 6.13979 6.17601 6.48858 6.72840 6.77608 7.15309 7.38497 7.94395 8.25330 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.015094 B = 0.007820 C = 0.005589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.547535 B = 3579.911956 C = 5008.428981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.171 4.171 3 C -0.075 4.075 4 C -0.063 4.063 5 C -0.025 4.025 6 N -0.435 5.435 7 C -0.137 4.137 8 C 0.072 3.928 9 N -0.498 5.498 10 C 0.184 3.816 11 C -0.416 4.416 12 H 0.112 0.888 13 C 0.019 3.981 14 N -0.740 5.740 15 Si 0.985 3.015 16 H -0.261 1.261 17 H -0.263 1.263 18 H -0.244 1.244 19 C -0.076 4.076 20 C -0.173 4.173 21 C -0.095 4.095 22 C 0.212 3.788 23 N -0.860 5.860 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.061 0.939 27 H 0.111 0.889 28 H 0.153 0.847 29 H 0.153 0.847 30 H 0.287 0.713 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.405 0.595 36 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.802 -12.715 -0.854 14.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.176 4.176 3 C -0.095 4.095 4 C -0.066 4.066 5 C -0.175 4.175 6 N -0.147 5.147 7 C -0.296 4.296 8 C -0.096 4.096 9 N -0.215 5.215 10 C 0.058 3.942 11 C -0.446 4.446 12 H 0.129 0.871 13 C -0.205 4.205 14 N -0.360 5.360 15 Si 0.804 3.196 16 H -0.186 1.186 17 H -0.188 1.188 18 H -0.166 1.166 19 C -0.096 4.096 20 C -0.177 4.177 21 C -0.152 4.152 22 C 0.106 3.894 23 N -0.403 5.403 24 H 0.092 0.908 25 H 0.100 0.900 26 H 0.080 0.920 27 H 0.129 0.871 28 H 0.171 0.829 29 H 0.171 0.829 30 H 0.098 0.902 31 H 0.120 0.880 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.236 0.764 36 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -6.691 -12.399 -0.773 14.111 hybrid contribution 0.138 0.599 0.307 0.687 sum -6.553 -11.801 -0.466 13.506 Atomic orbital electron populations 1.20600 0.89247 1.03089 1.02549 1.19472 0.97122 0.90924 1.10063 1.20939 0.92673 0.97645 0.98223 1.18112 0.92745 0.90373 1.05379 1.21791 0.98222 0.95967 1.01485 1.67837 1.05301 1.23115 1.18475 1.22839 1.05990 0.92570 1.08165 1.23810 0.94498 0.99110 0.92201 1.69515 1.07543 1.23197 1.21255 1.20891 0.93528 0.87665 0.92076 1.20266 1.08439 1.03267 1.12643 0.87072 1.27249 1.00692 0.93676 0.98921 1.70166 1.33852 1.04563 1.27463 0.85145 0.77156 0.79491 0.77841 1.18562 1.18757 1.16648 1.20817 0.98606 0.91200 0.99013 1.19467 0.92198 0.95864 1.10218 1.20570 0.99510 0.92616 1.02475 1.17362 0.90300 0.86954 0.94762 1.42304 1.09235 1.04182 1.84615 0.90797 0.90003 0.92022 0.87057 0.82926 0.82939 0.90226 0.87959 0.90907 0.91990 0.90104 0.76357 0.76369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.38 9.56 71.24 0.68 -1.70 16 2 C -0.17 -5.64 5.89 -19.77 -0.12 -5.76 16 3 C -0.07 -3.13 7.24 22.52 0.16 -2.97 16 4 C -0.06 -2.94 5.41 -20.02 -0.11 -3.05 16 5 C -0.02 -1.32 6.54 43.56 0.28 -1.04 16 6 N -0.44 -23.06 10.33 -178.78 -1.85 -24.91 16 7 C -0.14 -6.75 11.17 84.87 0.95 -5.81 16 8 C 0.07 3.63 11.17 84.93 0.95 4.58 16 9 N -0.50 -28.66 8.08 -184.15 -1.49 -30.15 16 10 C 0.18 10.55 6.67 41.54 0.28 10.82 16 11 C -0.42 -22.17 8.01 23.33 0.19 -21.98 16 12 H 0.11 5.54 4.87 -2.91 -0.01 5.52 16 13 C 0.02 0.93 5.50 85.32 0.47 1.40 16 14 N -0.74 -39.01 11.51 21.86 0.25 -38.76 16 15 Si 0.99 36.33 29.56 68.60 2.03 38.36 16 16 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 17 H -0.26 -9.19 7.11 99.48 0.71 -8.49 16 18 H -0.24 -8.41 7.11 99.48 0.71 -7.70 16 19 C -0.08 -3.15 9.32 22.52 0.21 -2.94 16 20 C -0.17 -5.60 5.89 -19.77 -0.12 -5.71 16 21 C -0.09 -2.19 9.56 71.24 0.68 -1.51 16 22 C 0.21 6.24 6.72 38.46 0.26 6.50 16 23 N -0.86 -16.30 8.86 -51.27 -0.45 -16.75 16 24 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.08 1.49 6.54 -2.39 -0.02 1.47 16 26 H 0.06 1.57 8.08 -2.39 -0.02 1.55 16 27 H 0.11 4.92 6.68 -2.91 -0.02 4.90 16 28 H 0.15 6.33 8.06 -2.91 -0.02 6.30 16 29 H 0.15 6.57 8.06 -2.91 -0.02 6.55 16 30 H 0.29 13.48 8.29 -92.71 -0.77 12.71 16 31 H 0.10 4.33 8.06 -2.91 -0.02 4.31 16 32 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.06 1.45 8.08 -2.39 -0.02 1.43 16 34 H 0.08 1.40 6.54 -2.39 -0.02 1.38 16 35 H 0.41 5.96 6.80 -92.71 -0.63 5.33 16 36 H 0.41 5.87 6.80 -92.71 -0.63 5.24 16 Total: -1.00 -69.61 301.47 3.14 -66.48 By element: Atomic # 1 Polarization: 35.03 SS G_CDS: -0.12 Total: 34.91 kcal Atomic # 6 Polarization: -33.94 SS G_CDS: 4.77 Total: -29.17 kcal Atomic # 7 Polarization: -107.03 SS G_CDS: -3.54 Total: -110.57 kcal Atomic # 14 Polarization: 36.33 SS G_CDS: 2.03 Total: 38.36 kcal Total: -69.61 3.14 -66.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241883088.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.024 kcal (2) G-P(sol) polarization free energy of solvation -69.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds