Wall clock time and date at job start Mon Mar 30 2020 01:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37643 * 119.96712 * 2 1 4 4 C 1.39830 * 119.92777 * 180.29763 * 3 2 1 5 5 C 1.47743 * 120.07023 * 179.74112 * 4 3 2 6 6 C 1.40537 * 120.79609 * 179.70379 * 5 4 3 7 7 N 1.31550 * 119.07916 * 179.73764 * 6 5 4 8 8 C 1.33693 * 120.83785 * 0.51636 * 7 6 5 9 9 C 1.40960 * 119.12291 * 179.72348 * 8 7 6 10 10 H 1.08002 * 119.99595 * 180.02562 * 9 8 7 11 11 C 1.40101 * 120.00255 * 0.03086 * 9 8 7 12 12 N 1.30684 * 119.99564 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00082 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47185 * 59.99859 * 13 11 9 15 15 H 1.48497 * 109.47164 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47240 * 299.99929 * 13 11 9 17 17 N 1.33689 * 121.75202 * 359.75714 * 8 7 6 18 18 C 1.31547 * 120.83522 * 359.96989 * 17 8 7 19 19 C 1.39837 * 119.86476 * 359.72026 * 4 3 2 20 20 C 1.37646 * 119.92636 * 359.97438 * 19 4 3 21 21 C 1.50700 * 119.96439 * 180.02562 * 20 19 4 22 22 C 1.39245 * 120.06583 * 0.02647 * 20 19 4 23 23 N 1.39223 * 119.92314 * 179.97438 * 22 20 19 24 24 H 1.09000 * 109.46795 * 270.23894 * 1 2 3 25 25 H 1.08997 * 109.47234 * 30.23995 * 1 2 3 26 26 H 1.09002 * 109.46935 * 150.23883 * 1 2 3 27 27 H 1.07999 * 120.03127 * 0.02562 * 3 2 1 28 28 H 1.08000 * 120.46478 * 359.96815 * 6 5 4 29 29 H 0.97004 * 119.99785 * 180.02562 * 12 11 9 30 30 H 1.08006 * 120.45508 * 180.02562 * 18 17 8 31 31 H 1.07996 * 120.04191 * 179.97438 * 19 4 3 32 32 H 1.08999 * 109.47106 * 270.02241 * 21 20 19 33 33 H 1.08997 * 109.46915 * 30.02338 * 21 20 19 34 34 H 1.08997 * 109.46634 * 150.02136 * 21 20 19 35 35 H 0.97001 * 120.00464 * 0.02562 * 23 22 20 36 36 H 0.97005 * 119.99811 * 179.72466 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.1924 0.0000 4 6 3.5928 1.1915 -0.0063 5 6 4.3339 2.4695 -0.0121 6 6 5.7392 2.4864 -0.0122 7 7 6.3647 3.6436 -0.0227 8 6 5.6808 4.7924 -0.0228 9 6 6.3879 6.0118 -0.0284 10 1 5.8496 6.9481 -0.0281 11 6 7.7889 6.0092 -0.0343 12 7 8.4401 4.8762 -0.0342 13 14 8.7259 7.6251 -0.0423 14 1 8.3737 8.4076 1.1697 15 1 10.1853 7.3511 -0.0471 16 1 8.3635 8.4014 -1.2552 17 7 4.3441 4.8153 -0.0172 18 6 3.6506 3.6975 -0.0119 19 6 4.2883 -0.0217 -0.0067 20 6 3.5950 -1.2107 -0.0003 21 6 4.3436 -2.5186 -0.0001 22 6 2.2025 -1.2063 0.0060 23 7 1.5042 -2.4107 0.0119 24 1 -0.3633 0.0043 1.0277 25 1 -0.3633 0.8878 -0.5175 26 1 -0.3633 -0.8921 -0.5101 27 1 1.6545 2.1277 0.0004 28 1 6.2979 1.5622 -0.0075 29 1 9.4102 4.8743 -0.0379 30 1 2.5708 3.7233 -0.0078 31 1 5.3683 -0.0258 -0.0119 32 1 4.5198 -2.8366 -1.0277 33 1 5.2986 -2.3905 0.5095 34 1 3.7538 -3.2747 0.5182 35 1 1.9876 -3.2517 0.0120 36 1 0.5342 -2.4089 0.0203 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241884239.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:00 Heat of formation + Delta-G solvation = 56.674884 kcal Electronic energy + Delta-G solvation = -19225.647073 eV Core-core repulsion = 16287.858099 eV Total energy + Delta-G solvation = -2937.788975 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.55342 -38.58683 -34.79846 -33.67508 -33.33111 -31.82628 -31.03350 -28.89793 -27.00117 -26.46991 -25.31620 -22.73768 -22.27821 -20.31546 -19.87468 -17.94996 -17.04558 -16.75382 -15.80042 -15.07272 -14.75750 -14.43441 -14.02776 -13.66439 -13.31538 -13.05486 -12.98435 -12.72207 -12.70878 -12.57511 -12.04604 -11.67667 -11.61386 -11.35724 -11.31358 -11.24819 -10.76460 -10.47993 -10.41188 -10.34531 -9.48019 -9.14873 -9.12370 -8.19130 -8.15247 -7.33872 -6.70249 -6.61044 -4.70566 1.74329 1.86701 2.79469 3.00399 3.01029 3.04019 3.14461 3.81984 4.12243 4.31091 4.70169 5.08486 5.14376 5.35401 5.47987 5.60349 5.71921 5.75721 5.77240 5.85467 5.90390 5.92216 5.95688 6.04966 6.10280 6.30845 6.44880 6.48345 6.69401 6.87570 6.94114 6.99260 7.13962 7.34279 7.56059 7.63835 7.84198 7.94992 8.08348 8.43038 8.50513 9.07728 10.03648 10.22702 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.038239 B = 0.004035 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.070424 B = 6938.459784 C = 7650.077897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.153 4.153 3 C -0.101 4.101 4 C -0.013 4.013 5 C -0.314 4.314 6 C 0.175 3.825 7 N -0.508 5.508 8 C 0.381 3.619 9 C -0.384 4.384 10 H 0.094 0.906 11 C 0.062 3.938 12 N -0.701 5.701 13 Si 0.922 3.078 14 H -0.262 1.262 15 H -0.275 1.275 16 H -0.262 1.262 17 N -0.594 5.594 18 C 0.180 3.820 19 C -0.099 4.099 20 C -0.152 4.152 21 C -0.101 4.101 22 C 0.182 3.818 23 N -0.884 5.884 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.053 0.947 27 H 0.117 0.883 28 H 0.130 0.870 29 H 0.278 0.722 30 H 0.130 0.870 31 H 0.118 0.882 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.391 0.609 36 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.757 -11.319 0.071 13.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.157 4.157 3 C -0.120 4.120 4 C -0.016 4.016 5 C -0.324 4.324 6 C -0.002 4.002 7 N -0.223 5.223 8 C 0.147 3.853 9 C -0.417 4.417 10 H 0.113 0.887 11 C -0.166 4.166 12 N -0.321 5.321 13 Si 0.745 3.255 14 H -0.186 1.186 15 H -0.200 1.200 16 H -0.186 1.186 17 N -0.312 5.312 18 C 0.005 3.995 19 C -0.118 4.118 20 C -0.157 4.157 21 C -0.158 4.158 22 C 0.079 3.921 23 N -0.427 5.427 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.134 0.866 28 H 0.147 0.853 29 H 0.089 0.911 30 H 0.148 0.852 31 H 0.136 0.864 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.220 0.780 36 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -6.879 -10.335 0.057 12.415 hybrid contribution -0.260 -0.640 0.009 0.691 sum -7.139 -10.975 0.066 13.092 Atomic orbital electron populations 1.20542 0.92125 1.01747 1.01333 1.19142 0.94993 0.91788 1.09824 1.20778 0.93444 0.96396 1.01341 1.18465 0.92024 0.92039 0.99093 1.19739 0.95422 0.92926 1.24323 1.23055 0.90095 0.96894 0.90157 1.69341 1.37893 0.96993 1.18119 1.19929 0.84681 0.92133 0.88555 1.19379 0.90534 0.92347 1.39482 0.88746 1.26189 0.98281 0.98435 0.93698 1.70134 1.09019 1.26960 1.26024 0.86150 0.78036 0.81112 0.80237 1.18613 1.19983 1.18607 1.68634 1.09536 1.29795 1.23267 1.22670 0.98389 0.87945 0.90454 1.20809 0.99173 0.90766 1.01029 1.19154 0.91390 0.95410 1.09705 1.20546 0.99634 0.94246 1.01359 1.17269 0.90431 0.85838 0.98531 1.42360 1.08388 1.05148 1.86811 0.92160 0.91779 0.92795 0.86557 0.85296 0.91059 0.85246 0.86427 0.92124 0.91726 0.92811 0.78011 0.78030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.14 9.56 36.01 0.34 -0.79 16 2 C -0.15 -2.28 5.89 -104.46 -0.62 -2.90 16 3 C -0.10 -1.73 9.09 -39.20 -0.36 -2.08 16 4 C -0.01 -0.25 5.89 -104.82 -0.62 -0.87 16 5 C -0.31 -7.11 5.94 -104.28 -0.62 -7.73 16 6 C 0.17 4.24 10.70 -16.81 -0.18 4.06 16 7 N -0.51 -14.07 7.82 -12.40 -0.10 -14.16 16 8 C 0.38 10.78 7.35 -158.14 -1.16 9.62 16 9 C -0.38 -10.43 9.34 -37.85 -0.35 -10.79 16 10 H 0.09 2.45 7.85 -52.49 -0.41 2.03 16 11 C 0.06 1.55 5.50 -17.34 -0.10 1.45 16 12 N -0.70 -18.15 11.40 55.55 0.63 -17.51 16 13 Si 0.92 18.15 29.56 -169.99 -5.02 13.13 16 14 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 15 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 16 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 17 N -0.59 -15.89 10.34 -12.40 -0.13 -16.02 16 18 C 0.18 4.21 10.70 -16.81 -0.18 4.03 16 19 C -0.10 -1.73 9.09 -39.20 -0.36 -2.08 16 20 C -0.15 -2.30 5.89 -104.46 -0.62 -2.91 16 21 C -0.10 -1.17 9.56 36.01 0.34 -0.83 16 22 C 0.18 2.60 6.72 -83.75 -0.56 2.03 16 23 N -0.88 -9.23 8.86 32.45 0.29 -8.94 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 26 H 0.05 0.51 6.55 -51.93 -0.34 0.17 16 27 H 0.12 1.88 6.28 -52.49 -0.33 1.55 16 28 H 0.13 2.76 6.32 -52.49 -0.33 2.43 16 29 H 0.28 6.45 8.29 -40.82 -0.34 6.11 16 30 H 0.13 2.58 6.33 -52.48 -0.33 2.24 16 31 H 0.12 1.98 6.28 -52.49 -0.33 1.65 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 34 H 0.05 0.52 6.54 -51.93 -0.34 0.18 16 35 H 0.39 3.41 6.80 -40.82 -0.28 3.13 16 36 H 0.39 3.38 6.81 -40.82 -0.28 3.11 16 LS Contribution 301.00 15.07 4.54 4.54 Total: -1.00 -30.72 301.00 -8.61 -39.32 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -3.79 Total: 9.44 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -5.03 Total: -9.79 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: 0.70 Total: -56.63 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.02 Total: 13.13 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.72 -8.61 -39.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241884239.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.998 kcal (2) G-P(sol) polarization free energy of solvation -30.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds