Wall clock time and date at job start Mon Mar 30 2020 01:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37643 * 119.96712 * 2 1 4 4 C 1.39830 * 119.92777 * 180.29763 * 3 2 1 5 5 C 1.47743 * 120.07023 * 179.74112 * 4 3 2 6 6 C 1.40537 * 120.79609 * 179.70379 * 5 4 3 7 7 N 1.31550 * 119.07916 * 179.73764 * 6 5 4 8 8 C 1.33693 * 120.83785 * 0.51636 * 7 6 5 9 9 C 1.40960 * 119.12291 * 179.72348 * 8 7 6 10 10 H 1.08002 * 119.99595 * 180.02562 * 9 8 7 11 11 C 1.40101 * 120.00255 * 0.03086 * 9 8 7 12 12 N 1.30684 * 119.99564 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00082 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47185 * 59.99859 * 13 11 9 15 15 H 1.48497 * 109.47164 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47240 * 299.99929 * 13 11 9 17 17 N 1.33689 * 121.75202 * 359.75714 * 8 7 6 18 18 C 1.31547 * 120.83522 * 359.96989 * 17 8 7 19 19 C 1.39837 * 119.86476 * 359.72026 * 4 3 2 20 20 C 1.37646 * 119.92636 * 359.97438 * 19 4 3 21 21 C 1.50700 * 119.96439 * 180.02562 * 20 19 4 22 22 C 1.39245 * 120.06583 * 0.02647 * 20 19 4 23 23 N 1.39223 * 119.92314 * 179.97438 * 22 20 19 24 24 H 1.09000 * 109.46795 * 270.23894 * 1 2 3 25 25 H 1.08997 * 109.47234 * 30.23995 * 1 2 3 26 26 H 1.09002 * 109.46935 * 150.23883 * 1 2 3 27 27 H 1.07999 * 120.03127 * 0.02562 * 3 2 1 28 28 H 1.08000 * 120.46478 * 359.96815 * 6 5 4 29 29 H 0.97004 * 119.99785 * 180.02562 * 12 11 9 30 30 H 1.08006 * 120.45508 * 180.02562 * 18 17 8 31 31 H 1.07996 * 120.04191 * 179.97438 * 19 4 3 32 32 H 1.08999 * 109.47106 * 270.02241 * 21 20 19 33 33 H 1.08997 * 109.46915 * 30.02338 * 21 20 19 34 34 H 1.08997 * 109.46634 * 150.02136 * 21 20 19 35 35 H 0.97001 * 120.00464 * 0.02562 * 23 22 20 36 36 H 0.97005 * 119.99811 * 179.72466 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.1924 0.0000 4 6 3.5928 1.1915 -0.0063 5 6 4.3339 2.4695 -0.0121 6 6 5.7392 2.4864 -0.0122 7 7 6.3647 3.6436 -0.0227 8 6 5.6808 4.7924 -0.0228 9 6 6.3879 6.0118 -0.0284 10 1 5.8496 6.9481 -0.0281 11 6 7.7889 6.0092 -0.0343 12 7 8.4401 4.8762 -0.0342 13 14 8.7259 7.6251 -0.0423 14 1 8.3737 8.4076 1.1697 15 1 10.1853 7.3511 -0.0471 16 1 8.3635 8.4014 -1.2552 17 7 4.3441 4.8153 -0.0172 18 6 3.6506 3.6975 -0.0119 19 6 4.2883 -0.0217 -0.0067 20 6 3.5950 -1.2107 -0.0003 21 6 4.3436 -2.5186 -0.0001 22 6 2.2025 -1.2063 0.0060 23 7 1.5042 -2.4107 0.0119 24 1 -0.3633 0.0043 1.0277 25 1 -0.3633 0.8878 -0.5175 26 1 -0.3633 -0.8921 -0.5101 27 1 1.6545 2.1277 0.0004 28 1 6.2979 1.5622 -0.0075 29 1 9.4102 4.8743 -0.0379 30 1 2.5708 3.7233 -0.0078 31 1 5.3683 -0.0258 -0.0119 32 1 4.5198 -2.8366 -1.0277 33 1 5.2986 -2.3905 0.5095 34 1 3.7538 -3.2747 0.5182 35 1 1.9876 -3.2517 0.0120 36 1 0.5342 -2.4089 0.0203 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241884239.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:00 Heat of formation + Delta-G solvation = 37.849415 kcal Electronic energy + Delta-G solvation = -19226.463407 eV Core-core repulsion = 16287.858099 eV Total energy + Delta-G solvation = -2938.605308 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.07592 -40.18546 -36.25587 -35.33658 -34.46794 -33.73209 -32.55328 -30.32423 -28.41887 -27.68083 -26.78610 -24.52036 -24.01331 -21.53277 -21.34222 -19.80665 -18.33868 -17.99664 -17.44197 -16.81105 -16.31355 -15.97962 -15.18992 -14.90893 -14.80976 -14.70129 -14.23116 -14.17802 -13.93703 -13.70638 -13.51451 -13.06623 -12.96437 -12.71806 -12.67114 -12.59797 -12.43381 -11.95963 -11.82064 -11.66146 -11.25984 -11.07253 -10.96554 -9.83733 -9.37837 -9.28262 -8.46222 -8.04646 -6.62738 0.18023 0.61898 1.03930 1.24858 1.39792 1.54417 1.58902 2.19294 2.69618 3.13568 3.16317 3.89476 3.93267 3.94573 4.04628 4.07276 4.17658 4.40356 4.53433 4.54762 4.68393 4.77968 4.85864 4.86558 4.89885 4.91776 5.06074 5.15028 5.29486 5.33142 5.46111 5.61371 5.65233 5.88419 6.04141 6.12011 6.15167 6.49526 6.58022 6.74378 7.12340 7.16207 8.18405 8.32938 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.038239 B = 0.004035 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.070424 B = 6938.459784 C = 7650.077897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.162 4.162 3 C -0.102 4.102 4 C -0.057 4.057 5 C -0.293 4.293 6 C 0.151 3.849 7 N -0.537 5.537 8 C 0.350 3.650 9 C -0.427 4.427 10 H 0.092 0.908 11 C 0.021 3.979 12 N -0.740 5.740 13 Si 1.003 2.997 14 H -0.257 1.257 15 H -0.260 1.260 16 H -0.257 1.257 17 N -0.618 5.618 18 C 0.162 3.838 19 C -0.105 4.105 20 C -0.163 4.163 21 C -0.100 4.100 22 C 0.197 3.803 23 N -0.865 5.865 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.120 0.880 28 H 0.149 0.851 29 H 0.287 0.713 30 H 0.162 0.838 31 H 0.114 0.886 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.404 0.596 36 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.299 -13.569 0.080 16.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.167 4.167 3 C -0.121 4.121 4 C -0.060 4.060 5 C -0.302 4.302 6 C -0.023 4.023 7 N -0.254 5.254 8 C 0.115 3.885 9 C -0.462 4.462 10 H 0.110 0.890 11 C -0.203 4.203 12 N -0.362 5.362 13 Si 0.821 3.179 14 H -0.181 1.181 15 H -0.184 1.184 16 H -0.181 1.181 17 N -0.338 5.338 18 C -0.011 4.011 19 C -0.123 4.123 20 C -0.168 4.168 21 C -0.156 4.156 22 C 0.091 3.909 23 N -0.408 5.408 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.138 0.862 28 H 0.166 0.834 29 H 0.098 0.902 30 H 0.179 0.821 31 H 0.132 0.868 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.235 0.765 36 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -8.491 -12.692 0.068 15.270 hybrid contribution -0.064 -0.335 0.008 0.342 sum -8.555 -13.027 0.076 15.585 Atomic orbital electron populations 1.20607 0.89313 1.03161 1.02515 1.19514 0.97066 0.91122 1.09001 1.20915 0.92615 0.97778 1.00813 1.18405 0.93057 0.91012 1.03572 1.20067 0.94997 0.94476 1.20646 1.23484 0.91409 0.96827 0.90590 1.69295 1.38863 0.97728 1.19499 1.20350 0.85512 0.92949 0.89706 1.19680 0.92140 0.92048 1.42304 0.89013 1.27145 0.98229 1.02499 0.92408 1.70200 1.09720 1.29374 1.26896 0.84963 0.76836 0.75795 0.80296 1.18115 1.18420 1.18106 1.68639 1.09314 1.31342 1.24469 1.23226 0.99829 0.87669 0.90348 1.20907 0.99254 0.91254 1.00933 1.19492 0.92173 0.95987 1.09107 1.20605 0.99699 0.92880 1.02461 1.17442 0.90429 0.87044 0.95962 1.42343 1.09202 1.04362 1.84880 0.90954 0.91390 0.90519 0.86175 0.83380 0.90246 0.82131 0.86791 0.91012 0.91663 0.90409 0.76543 0.76489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.86 9.56 71.24 0.68 -1.18 16 2 C -0.16 -4.37 5.89 -19.76 -0.12 -4.49 16 3 C -0.10 -3.39 9.09 22.51 0.20 -3.18 16 4 C -0.06 -2.20 5.89 -19.99 -0.12 -2.32 16 5 C -0.29 -13.64 5.94 -19.64 -0.12 -13.75 16 6 C 0.15 7.67 10.70 85.30 0.91 8.58 16 7 N -0.54 -31.36 7.82 -193.15 -1.51 -32.87 16 8 C 0.35 20.96 7.35 134.85 0.99 21.95 16 9 C -0.43 -24.50 9.34 23.39 0.22 -24.28 16 10 H 0.09 5.04 7.85 -2.91 -0.02 5.02 16 11 C 0.02 1.10 5.50 85.32 0.47 1.57 16 12 N -0.74 -39.90 11.40 21.85 0.25 -39.65 16 13 Si 1.00 38.07 29.56 68.60 2.03 40.10 16 14 H -0.26 -9.45 7.11 99.48 0.71 -8.75 16 15 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 16 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 17 N -0.62 -34.65 10.34 -193.15 -2.00 -36.65 16 18 C 0.16 7.80 10.70 85.30 0.91 8.71 16 19 C -0.10 -3.59 9.09 22.52 0.20 -3.38 16 20 C -0.16 -4.52 5.89 -19.76 -0.12 -4.63 16 21 C -0.10 -1.99 9.56 71.24 0.68 -1.31 16 22 C 0.20 4.92 6.72 38.45 0.26 5.18 16 23 N -0.86 -13.92 8.86 -51.24 -0.45 -14.38 16 24 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.07 1.25 8.08 -2.39 -0.02 1.23 16 26 H 0.08 1.08 6.55 -2.39 -0.02 1.07 16 27 H 0.12 3.75 6.28 -2.91 -0.02 3.74 16 28 H 0.15 6.64 6.32 -2.91 -0.02 6.62 16 29 H 0.29 13.70 8.29 -92.71 -0.77 12.94 16 30 H 0.16 6.46 6.33 -2.91 -0.02 6.44 16 31 H 0.11 3.86 6.28 -2.91 -0.02 3.85 16 32 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.06 1.31 8.08 -2.39 -0.02 1.29 16 34 H 0.08 1.16 6.54 -2.39 -0.02 1.15 16 35 H 0.40 4.97 6.80 -92.71 -0.63 4.34 16 36 H 0.40 4.88 6.81 -92.70 -0.63 4.24 16 Total: -1.00 -70.75 301.00 3.27 -67.48 By element: Atomic # 1 Polarization: 28.61 SS G_CDS: -0.11 Total: 28.50 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: 5.07 Total: -12.53 kcal Atomic # 7 Polarization: -119.83 SS G_CDS: -3.71 Total: -123.54 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 2.03 Total: 40.10 kcal Total: -70.75 3.27 -67.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241884239.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.328 kcal (2) G-P(sol) polarization free energy of solvation -70.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds