Wall clock time and date at job start Mon Mar 30 2020 01:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38835 * 119.24463 * 2 1 4 4 C 1.36905 * 119.81140 * 180.02562 * 3 2 1 5 5 C 1.41089 * 118.40125 * 0.02562 * 4 3 2 6 6 C 1.40885 * 120.71602 * 179.97438 * 5 4 3 7 7 H 1.08000 * 119.99172 * 149.39689 * 6 5 4 8 8 C 1.40009 * 119.99832 * 329.39845 * 6 5 4 9 9 N 1.30821 * 119.99597 * 162.80087 * 8 6 5 10 10 Si 1.86790 * 120.00444 * 342.80461 * 8 6 5 11 11 H 1.48500 * 109.47369 * 95.28044 * 10 8 6 12 12 H 1.48502 * 109.47302 * 215.27859 * 10 8 6 13 13 H 1.48494 * 109.47244 * 335.27454 * 10 8 6 14 14 C 1.41917 * 118.56359 * 359.97438 * 5 4 3 15 15 C 1.47738 * 119.99953 * 180.02562 * 14 5 4 16 16 C 1.41193 * 126.39177 * 325.00672 * 15 14 5 17 17 N 1.30513 * 108.09590 * 179.97438 * 16 15 14 18 18 N 1.39945 * 108.88639 * 0.02562 * 17 16 15 19 19 C 1.46498 * 125.79050 * 180.02562 * 18 17 16 20 20 C 1.53003 * 117.49890 * 163.65026 * 19 18 17 21 21 C 1.53000 * 117.49986 * 95.02472 * 19 18 17 22 22 C 1.34586 * 108.42041 * 359.75090 * 18 17 16 23 23 N 1.31779 * 119.24561 * 179.97438 * 2 1 3 24 24 H 1.08993 * 109.46881 * 270.02133 * 1 2 3 25 25 H 1.08999 * 109.46674 * 30.01847 * 1 2 3 26 26 H 1.08991 * 109.47256 * 150.01732 * 1 2 3 27 27 H 1.08002 * 120.09149 * 359.97438 * 3 2 1 28 28 H 1.07998 * 120.80141 * 180.02562 * 4 3 2 29 29 H 0.97004 * 120.00028 * 179.97438 * 9 8 6 30 30 H 1.08003 * 125.95663 * 359.97438 * 16 15 14 31 31 H 1.09001 * 115.55305 * 309.35409 * 19 18 17 32 32 H 1.09002 * 117.49522 * 359.97438 * 20 19 18 33 33 H 1.09002 * 117.49947 * 145.02366 * 20 19 18 34 34 H 1.09000 * 117.49942 * 214.97992 * 21 19 18 35 35 H 1.09002 * 117.49947 * 359.97438 * 21 19 18 36 36 H 1.07993 * 126.31418 * 180.26564 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1853 1.2114 0.0000 4 6 3.5543 1.2249 -0.0005 5 6 4.2376 -0.0094 -0.0016 6 6 5.6458 -0.0524 -0.0027 7 1 6.1613 -0.8738 0.4727 8 6 6.3769 0.9697 -0.6201 9 7 7.6467 1.1232 -0.3456 10 14 5.5392 2.1141 -1.8357 11 1 5.0983 3.3458 -1.1330 12 1 6.4936 2.4747 -2.9147 13 1 4.3597 1.4318 -2.4258 14 6 3.4758 -1.2068 -0.0016 15 6 4.1587 -2.5168 -0.0021 16 6 5.3713 -2.8291 -0.6545 17 7 5.6468 -4.0830 -0.4194 18 7 4.6372 -4.6260 0.3832 19 6 4.5778 -6.0071 0.8680 20 6 3.6231 -6.3093 2.0248 21 6 5.1341 -6.2900 2.2650 22 6 3.7331 -3.6624 0.6392 23 7 2.1509 -1.1498 0.0005 24 1 -0.3633 0.0004 1.0276 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3633 -0.8901 -0.5135 27 1 1.6345 2.1404 -0.0004 28 1 4.0981 2.1580 -0.0001 29 1 8.1533 1.8311 -0.7735 30 1 5.9671 -2.1490 -1.2451 31 1 4.7086 -6.7780 0.1086 32 1 3.0395 -5.4803 2.4254 33 1 3.1256 -7.2792 2.0266 34 1 5.6306 -7.2471 2.4246 35 1 5.5446 -5.4486 2.8231 36 1 2.8385 -3.7668 1.2350 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241905569.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:27 Heat of formation + Delta-G solvation = 126.674950 kcal Electronic energy + Delta-G solvation = -19748.232927 eV Core-core repulsion = 16813.479383 eV Total energy + Delta-G solvation = -2934.753544 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.52525 -38.60318 -36.93849 -34.19898 -32.15044 -31.48643 -30.37976 -28.72333 -27.90467 -24.42752 -23.22707 -22.63459 -21.66656 -21.13416 -19.53111 -19.39276 -17.49030 -16.98410 -15.66769 -15.55540 -15.00962 -14.33211 -14.02970 -13.68250 -13.45510 -13.29026 -13.20883 -12.71949 -12.21100 -12.00976 -11.87829 -11.68315 -11.56664 -11.55104 -11.16481 -10.86518 -10.79562 -10.75814 -10.36808 -9.99436 -9.83860 -9.47891 -8.71913 -8.63421 -8.19778 -8.01731 -7.11456 -7.06102 -4.52810 2.11990 2.54504 2.68861 2.85796 3.02570 3.12354 3.24262 3.59893 3.72663 3.88242 4.47269 4.53088 4.67363 4.85657 5.28541 5.36551 5.42304 5.50041 5.64043 5.70193 5.85735 5.87847 5.94698 6.08711 6.25552 6.27701 6.36068 6.40977 6.45586 6.64061 6.83483 6.92580 7.16683 7.37478 7.43646 7.55517 7.71533 7.82936 8.21886 8.42086 8.46710 8.63272 9.44418 9.93491 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.016911 B = 0.006937 C = 0.005201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.302910 B = 4035.487131 C = 5382.664154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.015 4.015 3 C -0.123 4.123 4 C -0.203 4.203 5 C 0.057 3.943 6 C -0.426 4.426 7 H 0.103 0.897 8 C 0.084 3.916 9 N -0.795 5.795 10 Si 0.906 3.094 11 H -0.269 1.269 12 H -0.287 1.287 13 H -0.244 1.244 14 C 0.093 3.907 15 C -0.135 4.135 16 C 0.084 3.916 17 N -0.313 5.313 18 N -0.358 5.358 19 C 0.094 3.906 20 C -0.173 4.173 21 C -0.181 4.181 22 C 0.053 3.947 23 N -0.451 5.451 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.102 0.898 28 H 0.109 0.891 29 H 0.288 0.712 30 H 0.193 0.807 31 H 0.133 0.867 32 H 0.104 0.896 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.988 -7.414 1.985 9.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.153 4.153 3 C -0.143 4.143 4 C -0.229 4.229 5 C 0.051 3.949 6 C -0.454 4.454 7 H 0.121 0.879 8 C -0.137 4.137 9 N -0.418 5.418 10 Si 0.733 3.267 11 H -0.195 1.195 12 H -0.214 1.214 13 H -0.167 1.167 14 C -0.050 4.050 15 C -0.147 4.147 16 C -0.103 4.103 17 N -0.133 5.133 18 N -0.140 5.140 19 C -0.009 4.009 20 C -0.212 4.212 21 C -0.219 4.219 22 C -0.093 4.093 23 N -0.159 5.159 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.120 0.880 28 H 0.126 0.874 29 H 0.098 0.902 30 H 0.210 0.790 31 H 0.150 0.850 32 H 0.123 0.877 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.120 0.880 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -5.389 -9.137 1.802 10.760 hybrid contribution -0.235 2.266 -0.247 2.291 sum -5.624 -6.872 1.556 9.015 Atomic orbital electron populations 1.20278 0.91302 1.01017 1.00524 1.20225 0.94954 0.88316 1.11771 1.21117 0.94803 0.97501 1.00853 1.21073 0.93940 0.97419 1.10431 1.18409 0.94470 0.90969 0.91017 1.19488 0.89531 1.07045 1.29370 0.87934 1.26210 0.94774 0.96245 0.96493 1.69683 1.08936 1.28378 1.34756 0.86367 0.80169 0.80251 0.79961 1.19511 1.21410 1.16720 1.18732 0.87508 0.90020 1.08736 1.18642 0.97588 0.92536 1.05953 1.24288 0.95806 0.91870 0.98330 1.77088 1.10914 1.11165 1.14086 1.47490 1.18067 1.07630 1.40774 1.21487 1.06496 0.81784 0.91164 1.23379 0.93623 1.04080 1.00088 1.23450 0.95931 1.04008 0.98522 1.22655 0.95853 0.88487 1.02270 1.66899 1.09709 1.29167 1.10160 0.93098 0.92889 0.92457 0.88026 0.87369 0.90160 0.79017 0.84990 0.87725 0.87075 0.87540 0.88012 0.81588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.23 10.15 36.01 0.37 -0.87 16 2 C -0.01 -0.32 6.79 -82.39 -0.56 -0.88 16 3 C -0.12 -2.64 9.64 -39.84 -0.38 -3.03 16 4 C -0.20 -4.81 7.21 -38.98 -0.28 -5.09 16 5 C 0.06 1.41 5.12 -106.41 -0.54 0.87 16 6 C -0.43 -10.88 7.43 -37.92 -0.28 -11.16 16 7 H 0.10 2.77 6.49 -52.49 -0.34 2.43 16 8 C 0.08 2.07 5.43 -17.32 -0.09 1.98 16 9 N -0.79 -20.08 13.93 55.55 0.77 -19.31 16 10 Si 0.91 19.89 24.53 -169.99 -4.17 15.72 16 11 H -0.27 -5.73 6.72 56.52 0.38 -5.35 16 12 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 13 H -0.24 -5.59 6.83 56.52 0.39 -5.20 16 14 C 0.09 2.24 6.74 -82.24 -0.55 1.68 16 15 C -0.14 -3.02 5.58 -104.98 -0.59 -3.60 16 16 C 0.08 1.84 9.94 -16.99 -0.17 1.67 16 17 N -0.31 -6.50 12.50 30.85 0.39 -6.12 16 18 N -0.36 -6.47 3.92 -54.24 -0.21 -6.68 16 19 C 0.09 1.24 7.12 -67.93 -0.48 0.76 16 20 C -0.17 -1.75 9.98 -26.73 -0.27 -2.01 16 21 C -0.18 -2.00 10.46 -26.73 -0.28 -2.27 16 22 C 0.05 1.02 10.78 -16.43 -0.18 0.84 16 23 N -0.45 -10.49 10.15 -5.45 -0.06 -10.55 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.05 0.78 8.07 -51.93 -0.42 0.36 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 28 H 0.11 2.49 4.85 -52.49 -0.25 2.24 16 29 H 0.29 6.60 8.30 -40.82 -0.34 6.26 16 30 H 0.19 4.24 6.89 -52.48 -0.36 3.87 16 31 H 0.13 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.10 1.12 6.98 -51.93 -0.36 0.75 16 33 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.17 2.83 7.20 -52.49 -0.38 2.45 16 LS Contribution 303.73 15.07 4.58 4.58 Total: -1.00 -28.89 303.73 -7.24 -36.13 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -4.25 Total: 7.32 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: -4.30 Total: -21.11 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: 0.89 Total: -42.65 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -4.17 Total: 15.72 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.89 -7.24 -36.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241905569.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.810 kcal (2) G-P(sol) polarization free energy of solvation -28.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds