Wall clock time and date at job start Mon Mar 30 2020 01:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38835 * 119.24463 * 2 1 4 4 C 1.36905 * 119.81140 * 180.02562 * 3 2 1 5 5 C 1.41089 * 118.40125 * 0.02562 * 4 3 2 6 6 C 1.40885 * 120.71602 * 179.97438 * 5 4 3 7 7 H 1.08000 * 119.99172 * 149.39689 * 6 5 4 8 8 C 1.40009 * 119.99832 * 329.39845 * 6 5 4 9 9 N 1.30821 * 119.99597 * 162.80087 * 8 6 5 10 10 Si 1.86790 * 120.00444 * 342.80461 * 8 6 5 11 11 H 1.48500 * 109.47369 * 95.28044 * 10 8 6 12 12 H 1.48502 * 109.47302 * 215.27859 * 10 8 6 13 13 H 1.48494 * 109.47244 * 335.27454 * 10 8 6 14 14 C 1.41917 * 118.56359 * 359.97438 * 5 4 3 15 15 C 1.47738 * 119.99953 * 180.02562 * 14 5 4 16 16 C 1.41193 * 126.39177 * 325.00672 * 15 14 5 17 17 N 1.30513 * 108.09590 * 179.97438 * 16 15 14 18 18 N 1.39945 * 108.88639 * 0.02562 * 17 16 15 19 19 C 1.46498 * 125.79050 * 180.02562 * 18 17 16 20 20 C 1.53003 * 117.49890 * 163.65026 * 19 18 17 21 21 C 1.53000 * 117.49986 * 95.02472 * 19 18 17 22 22 C 1.34586 * 108.42041 * 359.75090 * 18 17 16 23 23 N 1.31779 * 119.24561 * 179.97438 * 2 1 3 24 24 H 1.08993 * 109.46881 * 270.02133 * 1 2 3 25 25 H 1.08999 * 109.46674 * 30.01847 * 1 2 3 26 26 H 1.08991 * 109.47256 * 150.01732 * 1 2 3 27 27 H 1.08002 * 120.09149 * 359.97438 * 3 2 1 28 28 H 1.07998 * 120.80141 * 180.02562 * 4 3 2 29 29 H 0.97004 * 120.00028 * 179.97438 * 9 8 6 30 30 H 1.08003 * 125.95663 * 359.97438 * 16 15 14 31 31 H 1.09001 * 115.55305 * 309.35409 * 19 18 17 32 32 H 1.09002 * 117.49522 * 359.97438 * 20 19 18 33 33 H 1.09002 * 117.49947 * 145.02366 * 20 19 18 34 34 H 1.09000 * 117.49942 * 214.97992 * 21 19 18 35 35 H 1.09002 * 117.49947 * 359.97438 * 21 19 18 36 36 H 1.07993 * 126.31418 * 180.26564 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1853 1.2114 0.0000 4 6 3.5543 1.2249 -0.0005 5 6 4.2376 -0.0094 -0.0016 6 6 5.6458 -0.0524 -0.0027 7 1 6.1613 -0.8738 0.4727 8 6 6.3769 0.9697 -0.6201 9 7 7.6467 1.1232 -0.3456 10 14 5.5392 2.1141 -1.8357 11 1 5.0983 3.3458 -1.1330 12 1 6.4936 2.4747 -2.9147 13 1 4.3597 1.4318 -2.4258 14 6 3.4758 -1.2068 -0.0016 15 6 4.1587 -2.5168 -0.0021 16 6 5.3713 -2.8291 -0.6545 17 7 5.6468 -4.0830 -0.4194 18 7 4.6372 -4.6260 0.3832 19 6 4.5778 -6.0071 0.8680 20 6 3.6231 -6.3093 2.0248 21 6 5.1341 -6.2900 2.2650 22 6 3.7331 -3.6624 0.6392 23 7 2.1509 -1.1498 0.0005 24 1 -0.3633 0.0004 1.0276 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3633 -0.8901 -0.5135 27 1 1.6345 2.1404 -0.0004 28 1 4.0981 2.1580 -0.0001 29 1 8.1533 1.8311 -0.7735 30 1 5.9671 -2.1490 -1.2451 31 1 4.7086 -6.7780 0.1086 32 1 3.0395 -5.4803 2.4254 33 1 3.1256 -7.2792 2.0266 34 1 5.6306 -7.2471 2.4246 35 1 5.5446 -5.4486 2.8231 36 1 2.8385 -3.7668 1.2350 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241905569.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:26 Heat of formation + Delta-G solvation = 109.401506 kcal Electronic energy + Delta-G solvation = -19748.981960 eV Core-core repulsion = 16813.479383 eV Total energy + Delta-G solvation = -2935.502577 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.06196 -40.33016 -38.00572 -36.00630 -33.82439 -33.27014 -31.86666 -30.28555 -29.57370 -26.07855 -24.71164 -23.59587 -23.19173 -22.83899 -21.09269 -20.82859 -19.35082 -18.34283 -17.43413 -16.69674 -16.63952 -15.97381 -15.56499 -15.23409 -15.08872 -14.87250 -14.72378 -14.16266 -13.70333 -13.62882 -13.47877 -13.22584 -13.00228 -12.80341 -12.52219 -12.46754 -12.19853 -12.00104 -11.78895 -11.64144 -11.38935 -11.29490 -10.38313 -10.21037 -9.96559 -9.74847 -8.90845 -8.79738 -6.41651 0.41469 0.78748 1.03687 1.24716 1.36855 1.46668 1.54939 2.01933 2.09669 2.61804 2.66259 3.52169 3.55828 3.70347 3.86837 3.95283 3.99839 4.14079 4.23604 4.46810 4.60720 4.65798 4.75292 4.79315 4.81385 4.92705 4.96163 5.02312 5.05270 5.10410 5.14676 5.28340 5.44547 5.64258 5.69869 5.86174 6.04438 6.22224 6.31697 6.64378 6.74212 6.82029 7.66065 8.14825 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.016911 B = 0.006937 C = 0.005201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.302910 B = 4035.487131 C = 5382.664154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.008 4.008 3 C -0.130 4.130 4 C -0.212 4.212 5 C 0.033 3.967 6 C -0.448 4.448 7 H 0.070 0.930 8 C 0.053 3.947 9 N -0.835 5.835 10 Si 0.956 3.044 11 H -0.254 1.254 12 H -0.276 1.276 13 H -0.261 1.261 14 C 0.084 3.916 15 C -0.175 4.175 16 C 0.069 3.931 17 N -0.330 5.330 18 N -0.345 5.345 19 C 0.052 3.948 20 C -0.145 4.145 21 C -0.175 4.175 22 C 0.071 3.929 23 N -0.465 5.465 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.061 0.939 27 H 0.140 0.860 28 H 0.111 0.889 29 H 0.295 0.705 30 H 0.176 0.824 31 H 0.150 0.850 32 H 0.100 0.900 33 H 0.149 0.851 34 H 0.136 0.864 35 H 0.079 0.921 36 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.002 -8.191 2.524 12.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.147 4.147 3 C -0.150 4.150 4 C -0.238 4.238 5 C 0.028 3.972 6 C -0.477 4.477 7 H 0.088 0.912 8 C -0.163 4.163 9 N -0.460 5.460 10 Si 0.780 3.220 11 H -0.179 1.179 12 H -0.202 1.202 13 H -0.185 1.185 14 C -0.057 4.057 15 C -0.187 4.187 16 C -0.117 4.117 17 N -0.151 5.151 18 N -0.125 5.125 19 C -0.050 4.050 20 C -0.183 4.183 21 C -0.213 4.213 22 C -0.077 4.077 23 N -0.174 5.174 24 H 0.089 0.911 25 H 0.099 0.901 26 H 0.080 0.920 27 H 0.158 0.842 28 H 0.129 0.871 29 H 0.106 0.894 30 H 0.192 0.808 31 H 0.168 0.832 32 H 0.118 0.882 33 H 0.167 0.833 34 H 0.154 0.846 35 H 0.097 0.903 36 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -8.377 -9.940 2.349 13.209 hybrid contribution 0.499 2.316 -0.311 2.389 sum -7.877 -7.624 2.038 11.150 Atomic orbital electron populations 1.20390 0.87481 1.02660 1.02314 1.21204 0.97542 0.87849 1.08141 1.21541 0.94114 0.99353 0.99997 1.21277 0.95220 0.96955 1.10299 1.18600 0.94365 0.92191 0.92057 1.19284 0.90127 1.07012 1.31311 0.91205 1.26743 0.95112 0.97162 0.97329 1.69704 1.09957 1.29866 1.36522 0.85613 0.78842 0.79026 0.78500 1.17869 1.20188 1.18474 1.19032 0.88113 0.90602 1.08001 1.18782 0.98369 0.93286 1.08233 1.24047 0.96131 0.92316 0.99159 1.76993 1.12166 1.10729 1.15169 1.47898 1.16480 1.09213 1.38913 1.22147 1.10507 0.79429 0.92899 1.23566 0.92899 1.05626 0.96174 1.23512 0.97382 1.04531 0.95851 1.22922 0.96150 0.87710 1.00916 1.67046 1.09122 1.30145 1.11124 0.91082 0.90137 0.92004 0.84185 0.87145 0.89395 0.80754 0.83231 0.88175 0.83311 0.84557 0.90265 0.79073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.08 10.15 71.24 0.72 -1.36 16 2 C -0.01 -0.34 6.79 42.71 0.29 -0.05 16 3 C -0.13 -5.30 9.64 22.10 0.21 -5.09 16 4 C -0.21 -9.94 7.21 22.66 0.16 -9.77 16 5 C 0.03 1.68 5.12 -21.02 -0.11 1.58 16 6 C -0.45 -24.35 7.43 23.35 0.17 -24.17 16 7 H 0.07 4.13 6.49 -2.91 -0.02 4.12 16 8 C 0.05 2.75 5.43 85.27 0.46 3.21 16 9 N -0.84 -44.36 13.93 21.84 0.30 -44.05 16 10 Si 0.96 41.70 24.53 68.60 1.68 43.39 16 11 H -0.25 -10.31 6.72 99.48 0.67 -9.64 16 12 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 13 H -0.26 -11.93 6.83 99.48 0.68 -11.25 16 14 C 0.08 4.11 6.74 42.45 0.29 4.40 16 15 C -0.17 -8.06 5.58 -20.09 -0.11 -8.17 16 16 C 0.07 3.23 9.94 85.61 0.85 4.08 16 17 N -0.33 -14.21 12.50 -56.30 -0.70 -14.91 16 18 N -0.34 -12.35 3.92 -325.53 -1.27 -13.62 16 19 C 0.05 1.26 7.12 44.99 0.32 1.58 16 20 C -0.14 -2.39 9.98 30.60 0.31 -2.09 16 21 C -0.17 -3.44 10.46 30.60 0.32 -3.12 16 22 C 0.07 2.72 10.78 84.22 0.91 3.63 16 23 N -0.47 -21.18 10.15 -171.15 -1.74 -22.92 16 24 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.08 1.95 8.07 -2.39 -0.02 1.93 16 26 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.14 4.56 8.06 -2.91 -0.02 4.53 16 28 H 0.11 5.03 4.85 -2.91 -0.01 5.02 16 29 H 0.30 14.10 8.30 -92.71 -0.77 13.33 16 30 H 0.18 8.55 6.89 -2.91 -0.02 8.53 16 31 H 0.15 3.10 8.14 -2.39 -0.02 3.08 16 32 H 0.10 1.80 6.98 -2.39 -0.02 1.79 16 33 H 0.15 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.14 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.19 6.18 7.20 -2.91 -0.02 6.16 16 Total: -1.00 -65.82 303.73 4.10 -61.72 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: 1.04 Total: 25.73 kcal Atomic # 6 Polarization: -40.14 SS G_CDS: 4.80 Total: -35.34 kcal Atomic # 7 Polarization: -92.09 SS G_CDS: -3.41 Total: -95.50 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 1.68 Total: 43.39 kcal Total: -65.82 4.10 -61.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241905569.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.122 kcal (2) G-P(sol) polarization free energy of solvation -65.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds