Wall clock time and date at job start Mon Mar 30 2020 01:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31299 * 119.79963 * 2 1 4 4 C 1.33040 * 121.71250 * 179.97438 * 3 2 1 5 5 C 1.47899 * 119.45547 * 180.02562 * 4 3 2 6 6 C 1.41132 * 126.37779 * 185.02954 * 5 4 3 7 7 N 1.30530 * 108.10341 * 179.97438 * 6 5 4 8 8 N 1.39946 * 108.86327 * 359.97438 * 7 6 5 9 9 C 1.46497 * 125.80415 * 180.02562 * 8 7 6 10 10 C 1.52996 * 117.50059 * 163.60049 * 9 8 7 11 11 C 1.52998 * 117.49923 * 94.97332 * 9 8 7 12 12 C 1.34616 * 108.39560 * 359.77096 * 8 7 6 13 13 C 1.39966 * 121.08598 * 359.75278 * 4 3 2 14 14 C 1.36544 * 119.46735 * 0.52229 * 13 4 3 15 15 C 1.40914 * 119.79137 * 180.02562 * 2 1 3 16 16 C 1.41051 * 120.55197 * 359.97438 * 15 2 1 17 17 H 1.08006 * 120.00441 * 334.64813 * 16 15 2 18 18 C 1.39958 * 120.00080 * 154.65195 * 16 15 2 19 19 N 1.30840 * 119.99544 * 343.62142 * 18 16 15 20 20 Si 1.86800 * 119.99920 * 163.62639 * 18 16 15 21 21 H 1.48496 * 109.47235 * 90.00247 * 20 18 16 22 22 H 1.48507 * 109.46581 * 209.99536 * 20 18 16 23 23 H 1.48491 * 109.47305 * 329.99741 * 20 18 16 24 24 H 1.08999 * 109.47027 * 269.98262 * 1 2 3 25 25 H 1.09003 * 109.46474 * 29.97483 * 1 2 3 26 26 H 1.08997 * 109.47297 * 149.97171 * 1 2 3 27 27 H 1.08008 * 125.94718 * 359.97438 * 6 5 4 28 28 H 1.09008 * 115.54982 * 309.30846 * 9 8 7 29 29 H 1.08999 * 117.50230 * 359.97438 * 10 9 8 30 30 H 1.09000 * 117.49925 * 145.02542 * 10 9 8 31 31 H 1.08998 * 117.49804 * 214.97858 * 11 9 8 32 32 H 1.08992 * 117.50019 * 359.97438 * 11 9 8 33 33 H 1.07998 * 126.30757 * 180.22993 * 12 8 7 34 34 H 1.07997 * 120.26556 * 180.28750 * 13 4 3 35 35 H 1.07998 * 120.78905 * 179.76194 * 14 13 4 36 36 H 0.96998 * 119.99260 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1596 1.1394 0.0000 4 6 3.4892 1.1838 0.0005 5 6 4.1731 2.4952 0.0011 6 6 5.5639 2.7140 -0.0980 7 7 5.7754 4.0015 -0.0623 8 7 4.5459 4.6589 0.0591 9 6 4.3531 6.1093 0.1321 10 6 2.9439 6.6482 -0.1220 11 6 4.0396 6.8467 -1.1713 12 6 3.5701 3.7321 0.0918 13 6 4.2515 0.0099 0.0062 14 6 3.6203 -1.2009 0.0006 15 6 2.2072 -1.2229 -0.0005 16 6 1.5092 -2.4487 -0.0006 17 1 0.5076 -2.4999 0.4003 18 6 2.1147 -3.5987 -0.5199 19 7 3.1713 -3.4932 -1.2843 20 14 1.4140 -5.2839 -0.1219 21 1 0.4041 -5.6545 -1.1456 22 1 2.5088 -6.2874 -0.1208 23 1 0.7724 -5.2497 1.2168 24 1 -0.3633 -0.0003 1.0277 25 1 -0.3632 0.8903 -0.5135 26 1 -0.3634 -0.8897 -0.5142 27 1 6.3212 1.9492 -0.1877 28 1 4.9656 6.6285 0.8693 29 1 2.1603 5.9238 -0.3438 30 1 2.6290 7.5222 0.4482 31 1 4.4455 7.8511 -1.2914 32 1 3.9773 6.2528 -2.0831 33 1 2.5104 3.9221 0.1764 34 1 5.3302 0.0614 0.0113 35 1 4.1875 -2.1199 0.0009 36 1 3.5906 -4.2902 -1.6446 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241906453.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:28 Heat of formation + Delta-G solvation = 106.064516 kcal Electronic energy + Delta-G solvation = -19213.692532 eV Core-core repulsion = 16278.045253 eV Total energy + Delta-G solvation = -2935.647279 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.07540 -40.14813 -38.02973 -35.97330 -33.80841 -32.61726 -31.89896 -30.56347 -28.66143 -26.84214 -24.47276 -23.67341 -23.20772 -22.44211 -21.14596 -20.66540 -19.18256 -18.35162 -17.29055 -16.69863 -16.33891 -15.99944 -15.65919 -15.36454 -15.00824 -14.68783 -14.23993 -13.95424 -13.62170 -13.48052 -13.28852 -13.22611 -12.94342 -12.73936 -12.59552 -12.48578 -12.20725 -11.99682 -11.85149 -11.57531 -11.36886 -11.18243 -10.30405 -10.16613 -9.90380 -9.85908 -8.79756 -8.56991 -6.28954 0.51702 0.99773 1.13023 1.41162 1.45965 1.49638 1.56129 2.04514 2.20714 2.62093 2.86715 3.53560 3.68773 3.78275 3.86851 3.95720 3.97163 4.10773 4.49889 4.62064 4.64785 4.69268 4.71763 4.82792 4.89602 4.93905 5.03691 5.09935 5.10940 5.19917 5.23461 5.36732 5.55986 5.61824 5.92845 6.01908 6.10275 6.18478 6.55376 6.74767 6.80249 6.87612 7.80270 8.27108 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.038290 B = 0.004040 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.090901 B = 6928.823228 C = 7495.279978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.014 4.014 3 N -0.471 5.471 4 C 0.054 3.946 5 C -0.177 4.177 6 C 0.049 3.951 7 N -0.318 5.318 8 N -0.344 5.344 9 C 0.054 3.946 10 C -0.152 4.152 11 C -0.170 4.170 12 C 0.067 3.933 13 C -0.143 4.143 14 C -0.155 4.155 15 C 0.037 3.963 16 C -0.468 4.468 17 H 0.092 0.908 18 C 0.034 3.966 19 N -0.819 5.819 20 Si 0.985 3.015 21 H -0.261 1.261 22 H -0.269 1.269 23 H -0.256 1.256 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.197 0.803 28 H 0.152 0.848 29 H 0.097 0.903 30 H 0.146 0.854 31 H 0.137 0.863 32 H 0.082 0.918 33 H 0.185 0.815 34 H 0.120 0.880 35 H 0.113 0.887 36 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.470 12.043 1.733 12.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.157 4.157 3 N -0.180 5.180 4 C -0.083 4.083 5 C -0.189 4.189 6 C -0.136 4.136 7 N -0.139 5.139 8 N -0.125 5.125 9 C -0.048 4.048 10 C -0.190 4.190 11 C -0.208 4.208 12 C -0.081 4.081 13 C -0.164 4.164 14 C -0.181 4.181 15 C 0.032 3.968 16 C -0.497 4.497 17 H 0.110 0.890 18 C -0.182 4.182 19 N -0.444 5.444 20 Si 0.805 3.195 21 H -0.185 1.185 22 H -0.194 1.194 23 H -0.179 1.179 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.214 0.786 28 H 0.169 0.831 29 H 0.116 0.884 30 H 0.164 0.836 31 H 0.155 0.845 32 H 0.100 0.900 33 H 0.202 0.798 34 H 0.138 0.862 35 H 0.131 0.869 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.122 13.752 1.566 13.841 hybrid contribution -0.012 -2.560 -0.081 2.562 sum 0.110 11.191 1.484 11.290 Atomic orbital electron populations 1.20224 0.88834 1.01646 1.01303 1.21536 0.96865 0.87872 1.09398 1.66842 1.09050 1.30279 1.11818 1.18516 0.88603 0.90657 1.10546 1.18985 0.92745 0.91586 1.15610 1.24141 0.95813 0.93700 0.99980 1.76957 1.04471 1.06720 1.25782 1.47900 1.03338 1.05852 1.55440 1.22146 1.03810 0.75174 1.03687 1.23560 0.89951 1.03706 1.01816 1.23512 1.02203 1.02633 0.92482 1.22847 0.95794 0.87925 1.01516 1.21419 0.99741 0.92918 1.02302 1.21327 0.95064 0.96842 1.04848 1.18712 0.92970 0.94263 0.90828 1.19818 1.02306 0.92689 1.34842 0.89024 1.26877 0.94341 1.05275 0.91742 1.69863 1.18722 1.33559 1.22237 0.85148 0.78833 0.75369 0.80119 1.18511 1.19355 1.17915 0.91998 0.92077 0.91554 0.78623 0.83073 0.88442 0.83578 0.84483 0.89964 0.79814 0.86165 0.86864 0.89820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.58 9.58 71.24 0.68 -1.89 16 2 C -0.01 -0.69 6.86 43.30 0.30 -0.39 16 3 N -0.47 -23.20 9.96 -170.97 -1.70 -24.91 16 4 C 0.05 2.58 6.76 41.94 0.28 2.87 16 5 C -0.18 -7.28 6.09 -20.09 -0.12 -7.40 16 6 C 0.05 1.82 11.40 85.60 0.98 2.80 16 7 N -0.32 -11.30 12.51 -56.33 -0.70 -12.01 16 8 N -0.34 -10.86 3.92 -325.59 -1.28 -12.14 16 9 C 0.05 1.14 7.12 44.99 0.32 1.46 16 10 C -0.15 -2.32 9.98 30.59 0.31 -2.01 16 11 C -0.17 -2.86 10.46 30.60 0.32 -2.54 16 12 C 0.07 2.38 10.59 84.19 0.89 3.27 16 13 C -0.14 -6.92 9.54 22.29 0.21 -6.71 16 14 C -0.16 -8.20 8.73 22.64 0.20 -8.00 16 15 C 0.04 1.96 5.58 -21.17 -0.12 1.84 16 16 C -0.47 -23.85 8.13 23.38 0.19 -23.66 16 17 H 0.09 4.38 6.87 -2.91 -0.02 4.36 16 18 C 0.03 1.62 5.18 85.26 0.44 2.07 16 19 N -0.82 -41.30 10.96 21.83 0.24 -41.06 16 20 Si 0.99 36.14 29.59 68.60 2.03 38.17 16 21 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 22 H -0.27 -9.51 7.11 99.48 0.71 -8.80 16 23 H -0.26 -9.15 7.11 99.48 0.71 -8.45 16 24 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.07 2.69 6.76 -2.39 -0.02 2.67 16 27 H 0.20 6.24 7.34 -2.91 -0.02 6.22 16 28 H 0.15 2.65 8.14 -2.38 -0.02 2.63 16 29 H 0.10 1.72 6.98 -2.39 -0.02 1.70 16 30 H 0.15 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.14 1.48 8.14 -2.39 -0.02 1.47 16 32 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.18 5.97 7.21 -2.91 -0.02 5.95 16 34 H 0.12 5.04 7.03 -2.91 -0.02 5.02 16 35 H 0.11 6.11 6.27 -2.91 -0.02 6.09 16 36 H 0.29 13.24 8.30 -92.71 -0.77 12.47 16 Total: -1.00 -64.43 309.84 4.56 -59.87 By element: Atomic # 1 Polarization: 29.27 SS G_CDS: 1.10 Total: 30.38 kcal Atomic # 6 Polarization: -43.18 SS G_CDS: 4.88 Total: -38.30 kcal Atomic # 7 Polarization: -86.67 SS G_CDS: -3.44 Total: -90.11 kcal Atomic # 14 Polarization: 36.14 SS G_CDS: 2.03 Total: 38.17 kcal Total: -64.43 4.56 -59.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241906453.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.934 kcal (2) G-P(sol) polarization free energy of solvation -64.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds