Wall clock time and date at job start Mon Mar 30 2020 01:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.38673 * 120.00011 * 2 1 4 4 C 1.39374 * 119.53722 * 0.02562 * 3 2 1 5 5 C 1.36911 * 119.37934 * 179.75914 * 4 3 2 6 6 C 1.40284 * 118.49843 * 0.48718 * 5 4 3 7 7 C 1.47809 * 120.48065 * 179.74811 * 6 5 4 8 8 C 1.39983 * 119.46344 * 184.99245 * 7 6 5 9 9 C 1.36549 * 119.46874 * 180.29766 * 8 7 6 10 10 C 1.41335 * 118.41718 * 359.44538 * 9 8 7 11 11 C 1.41024 * 120.54309 * 180.29818 * 10 9 8 12 12 H 1.08004 * 119.99739 * 149.88112 * 11 10 9 13 13 C 1.39988 * 120.00197 * 329.87555 * 11 10 9 14 14 N 1.30807 * 120.00038 * 162.18926 * 13 11 10 15 15 Si 1.86797 * 119.99658 * 342.18847 * 13 11 10 16 16 H 1.48505 * 109.47072 * 95.39109 * 15 13 11 17 17 H 1.48496 * 109.47309 * 215.38399 * 15 13 11 18 18 H 1.48504 * 109.47549 * 335.39121 * 15 13 11 19 19 C 1.40948 * 118.91009 * 0.27017 * 10 9 8 20 20 C 1.50701 * 119.79909 * 180.02562 * 19 10 9 21 21 N 1.31262 * 120.40175 * 0.02562 * 19 10 9 22 22 C 1.39557 * 119.04696 * 359.47317 * 6 5 4 23 23 N 1.31740 * 120.51602 * 0.29778 * 22 6 5 24 24 H 1.08998 * 109.47111 * 299.99987 * 1 2 3 25 25 H 1.09001 * 109.47187 * 60.00180 * 1 2 3 26 26 H 1.08995 * 109.46864 * 180.02562 * 1 2 3 27 27 H 0.97005 * 120.00222 * 179.97438 * 2 1 3 28 28 H 1.07996 * 120.31248 * 0.02562 * 4 3 2 29 29 H 1.08000 * 120.75392 * 180.23145 * 5 4 3 30 30 H 1.08004 * 120.26491 * 0.02562 * 8 7 6 31 31 H 1.08000 * 120.78971 * 179.71411 * 9 8 7 32 32 H 0.97006 * 120.00298 * 180.02562 * 14 13 11 33 33 H 1.09001 * 109.47334 * 90.00156 * 20 19 10 34 34 H 1.08999 * 109.46871 * 210.00295 * 20 19 10 35 35 H 1.08998 * 109.46839 * 330.00046 * 20 19 10 36 36 H 1.08001 * 119.74474 * 180.27364 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1584 1.2009 0.0000 4 6 1.4518 2.4023 0.0005 5 6 2.1396 3.5861 0.0056 6 6 3.5418 3.5455 -0.0005 7 6 4.3281 4.7971 -0.0010 8 6 5.7221 4.7344 -0.1131 9 6 6.4490 5.8903 -0.1075 10 6 5.7585 7.1187 0.0005 11 6 6.4642 8.3397 0.0045 12 1 6.0017 9.2319 -0.3911 13 6 7.7640 8.3952 0.5212 14 7 8.5441 9.4018 0.2226 15 14 8.3843 7.0318 1.6373 16 1 9.1363 6.0363 0.8317 17 1 9.2793 7.6082 2.6726 18 1 7.2307 6.3667 2.2947 19 6 4.3528 7.1034 0.1037 20 6 3.5962 8.4016 0.2193 21 7 3.6988 5.9653 0.0997 22 6 4.1838 2.3064 -0.0001 23 7 3.4839 1.1903 -0.0001 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.9501 -0.8401 0.0004 28 1 0.3718 2.3995 0.0014 29 1 1.6145 4.5298 0.0098 30 1 6.2189 3.7793 -0.1990 31 1 7.5258 5.8666 -0.1881 32 1 9.4450 9.4401 0.5803 33 1 3.3381 8.7616 -0.7767 34 1 2.6848 8.2408 0.7950 35 1 4.2185 9.1411 0.7231 36 1 5.2629 2.2620 -0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242067038.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:10 Heat of formation + Delta-G solvation = 58.581977 kcal Electronic energy + Delta-G solvation = -19253.305608 eV Core-core repulsion = 16315.599331 eV Total energy + Delta-G solvation = -2937.706277 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.92192 -38.65360 -35.71595 -34.17616 -32.54103 -32.00008 -31.25660 -29.39800 -27.24680 -26.54694 -24.44770 -23.15894 -22.35188 -21.10618 -20.15858 -17.65976 -17.49351 -16.69724 -15.81071 -15.29291 -15.04616 -14.60623 -14.30751 -14.12449 -13.51510 -13.47459 -13.05856 -12.98078 -12.84525 -12.49848 -12.22518 -12.01819 -11.73930 -11.45505 -11.42724 -11.14466 -10.86718 -10.43338 -10.00867 -9.98032 -9.57458 -9.38653 -9.08854 -8.52013 -8.22817 -8.05436 -7.21173 -7.02230 -4.63602 1.43994 1.78590 2.48502 2.68500 2.98088 3.08042 3.18549 3.32412 3.79423 4.18350 4.57794 4.90178 5.04406 5.19910 5.30125 5.32470 5.42246 5.50460 5.54695 5.60937 5.79379 6.00828 6.15119 6.22485 6.35749 6.47590 6.55003 6.64548 6.72700 6.75299 6.82621 6.93562 7.18152 7.27336 7.38575 7.52741 7.68051 7.73596 8.06390 8.31674 8.48735 8.51001 9.35785 9.78169 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.034655 B = 0.004434 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.759263 B = 6313.723358 C = 6951.787287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.738 5.738 3 C 0.370 3.630 4 C -0.232 4.232 5 C -0.027 4.027 6 C -0.088 4.088 7 C 0.013 3.987 8 C -0.106 4.106 9 C -0.210 4.210 10 C 0.048 3.952 11 C -0.415 4.415 12 H 0.101 0.899 13 C 0.082 3.918 14 N -0.788 5.788 15 Si 0.911 3.089 16 H -0.266 1.266 17 H -0.286 1.286 18 H -0.243 1.243 19 C 0.032 3.968 20 C -0.075 4.075 21 N -0.445 5.445 22 C 0.128 3.872 23 N -0.540 5.540 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.073 0.927 27 H 0.401 0.599 28 H 0.123 0.877 29 H 0.138 0.862 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.290 0.710 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.071 0.929 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.938 -10.927 0.816 14.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.373 5.373 3 C 0.135 3.865 4 C -0.256 4.256 5 C -0.053 4.053 6 C -0.093 4.093 7 C -0.120 4.120 8 C -0.126 4.126 9 C -0.235 4.235 10 C 0.043 3.957 11 C -0.443 4.443 12 H 0.119 0.881 13 C -0.140 4.140 14 N -0.410 5.410 15 Si 0.736 3.264 16 H -0.192 1.192 17 H -0.213 1.213 18 H -0.166 1.166 19 C -0.115 4.115 20 C -0.133 4.133 21 N -0.154 5.154 22 C -0.030 4.030 23 N -0.257 5.257 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.091 0.909 27 H 0.235 0.765 28 H 0.141 0.859 29 H 0.156 0.844 30 H 0.124 0.876 31 H 0.128 0.872 32 H 0.101 0.899 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -9.379 -11.506 0.876 14.870 hybrid contribution 1.246 -0.024 0.299 1.281 sum -8.133 -11.530 1.175 14.159 Atomic orbital electron populations 1.21489 0.79604 1.02166 1.01174 1.43985 1.05293 1.05247 1.82752 1.18328 0.88438 0.86174 0.93530 1.21037 1.00300 0.91902 1.12381 1.21184 0.93466 0.97857 0.92827 1.19337 0.93266 0.92830 1.03855 1.18525 0.89485 0.89829 1.14136 1.21190 0.94221 0.97683 0.99538 1.21007 0.98807 0.92893 1.10753 1.18494 0.92983 0.93290 0.90934 1.19548 0.96738 0.96119 1.31891 0.88114 1.26288 0.95611 0.96657 0.95436 1.69667 1.07818 1.29635 1.33929 0.86291 0.79855 0.80326 0.79882 1.19226 1.21281 1.16642 1.21027 0.90882 0.92366 1.07253 1.20313 0.98580 0.93565 1.00795 1.66790 1.40991 0.97688 1.09885 1.22460 0.99220 0.86076 0.95234 1.67070 1.05937 1.31946 1.20717 0.92970 0.92959 0.90864 0.76506 0.85859 0.84439 0.87589 0.87240 0.89883 0.92892 0.92904 0.91001 0.82958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.82 9.91 59.85 0.59 1.41 16 2 N -0.74 -8.66 5.87 -67.20 -0.39 -9.05 16 3 C 0.37 5.75 7.64 -155.12 -1.19 4.56 16 4 C -0.23 -3.54 9.25 -39.64 -0.37 -3.90 16 5 C -0.03 -0.48 9.63 -39.29 -0.38 -0.85 16 6 C -0.09 -1.70 5.89 -104.72 -0.62 -2.32 16 7 C 0.01 0.29 6.73 -82.76 -0.56 -0.26 16 8 C -0.11 -2.30 9.38 -39.54 -0.37 -2.67 16 9 C -0.21 -4.90 7.21 -39.01 -0.28 -5.19 16 10 C 0.05 1.18 5.11 -106.64 -0.54 0.63 16 11 C -0.42 -10.37 8.53 -37.87 -0.32 -10.69 16 12 H 0.10 2.58 7.23 -52.48 -0.38 2.20 16 13 C 0.08 2.00 5.42 -17.33 -0.09 1.90 16 14 N -0.79 -19.45 13.93 55.55 0.77 -18.68 16 15 Si 0.91 19.61 24.52 -169.99 -4.17 15.44 16 16 H -0.27 -5.54 6.71 56.52 0.38 -5.17 16 17 H -0.29 -5.92 7.11 56.52 0.40 -5.52 16 18 H -0.24 -5.50 6.85 56.52 0.39 -5.11 16 19 C 0.03 0.75 6.86 -81.81 -0.56 0.19 16 20 C -0.07 -1.48 9.59 36.01 0.35 -1.14 16 21 N -0.45 -10.23 9.38 -5.41 -0.05 -10.28 16 22 C 0.13 2.28 10.58 -17.10 -0.18 2.10 16 23 N -0.54 -9.32 10.39 -12.09 -0.13 -9.44 16 24 H 0.05 0.42 7.91 -51.93 -0.41 0.01 16 25 H 0.05 0.42 7.91 -51.93 -0.41 0.01 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.40 4.23 8.95 -40.82 -0.37 3.86 16 28 H 0.12 1.53 6.66 -52.49 -0.35 1.18 16 29 H 0.14 2.39 7.61 -52.49 -0.40 1.99 16 30 H 0.11 1.95 6.20 -52.48 -0.33 1.63 16 31 H 0.11 2.48 4.82 -52.49 -0.25 2.23 16 32 H 0.29 6.46 8.30 -40.82 -0.34 6.13 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 1.41 6.85 -51.93 -0.36 1.05 16 36 H 0.15 2.47 6.20 -52.49 -0.33 2.14 16 LS Contribution 299.56 15.07 4.51 4.51 Total: -1.00 -28.04 299.56 -7.99 -36.03 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -4.01 Total: 7.70 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -4.52 Total: -16.23 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: 0.20 Total: -47.45 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -4.17 Total: 15.44 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.04 -7.99 -36.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242067038.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.610 kcal (2) G-P(sol) polarization free energy of solvation -28.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds