Wall clock time and date at job start Mon Mar 30 2020 01:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.38673 * 120.00011 * 2 1 4 4 C 1.39374 * 119.53722 * 0.02562 * 3 2 1 5 5 C 1.36911 * 119.37934 * 179.75914 * 4 3 2 6 6 C 1.40284 * 118.49843 * 0.48718 * 5 4 3 7 7 C 1.47809 * 120.48065 * 179.74811 * 6 5 4 8 8 C 1.39983 * 119.46344 * 184.99245 * 7 6 5 9 9 C 1.36549 * 119.46874 * 180.29766 * 8 7 6 10 10 C 1.41335 * 118.41718 * 359.44538 * 9 8 7 11 11 C 1.41024 * 120.54309 * 180.29818 * 10 9 8 12 12 H 1.08004 * 119.99739 * 149.88112 * 11 10 9 13 13 C 1.39988 * 120.00197 * 329.87555 * 11 10 9 14 14 N 1.30807 * 120.00038 * 162.18926 * 13 11 10 15 15 Si 1.86797 * 119.99658 * 342.18847 * 13 11 10 16 16 H 1.48505 * 109.47072 * 95.39109 * 15 13 11 17 17 H 1.48496 * 109.47309 * 215.38399 * 15 13 11 18 18 H 1.48504 * 109.47549 * 335.39121 * 15 13 11 19 19 C 1.40948 * 118.91009 * 0.27017 * 10 9 8 20 20 C 1.50701 * 119.79909 * 180.02562 * 19 10 9 21 21 N 1.31262 * 120.40175 * 0.02562 * 19 10 9 22 22 C 1.39557 * 119.04696 * 359.47317 * 6 5 4 23 23 N 1.31740 * 120.51602 * 0.29778 * 22 6 5 24 24 H 1.08998 * 109.47111 * 299.99987 * 1 2 3 25 25 H 1.09001 * 109.47187 * 60.00180 * 1 2 3 26 26 H 1.08995 * 109.46864 * 180.02562 * 1 2 3 27 27 H 0.97005 * 120.00222 * 179.97438 * 2 1 3 28 28 H 1.07996 * 120.31248 * 0.02562 * 4 3 2 29 29 H 1.08000 * 120.75392 * 180.23145 * 5 4 3 30 30 H 1.08004 * 120.26491 * 0.02562 * 8 7 6 31 31 H 1.08000 * 120.78971 * 179.71411 * 9 8 7 32 32 H 0.97006 * 120.00298 * 180.02562 * 14 13 11 33 33 H 1.09001 * 109.47334 * 90.00156 * 20 19 10 34 34 H 1.08999 * 109.46871 * 210.00295 * 20 19 10 35 35 H 1.08998 * 109.46839 * 330.00046 * 20 19 10 36 36 H 1.08001 * 119.74474 * 180.27364 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1584 1.2009 0.0000 4 6 1.4518 2.4023 0.0005 5 6 2.1396 3.5861 0.0056 6 6 3.5418 3.5455 -0.0005 7 6 4.3281 4.7971 -0.0010 8 6 5.7221 4.7344 -0.1131 9 6 6.4490 5.8903 -0.1075 10 6 5.7585 7.1187 0.0005 11 6 6.4642 8.3397 0.0045 12 1 6.0017 9.2319 -0.3911 13 6 7.7640 8.3952 0.5212 14 7 8.5441 9.4018 0.2226 15 14 8.3843 7.0318 1.6373 16 1 9.1363 6.0363 0.8317 17 1 9.2793 7.6082 2.6726 18 1 7.2307 6.3667 2.2947 19 6 4.3528 7.1034 0.1037 20 6 3.5962 8.4016 0.2193 21 7 3.6988 5.9653 0.0997 22 6 4.1838 2.3064 -0.0001 23 7 3.4839 1.1903 -0.0001 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.9501 -0.8401 0.0004 28 1 0.3718 2.3995 0.0014 29 1 1.6145 4.5298 0.0098 30 1 6.2189 3.7793 -0.1990 31 1 7.5258 5.8666 -0.1881 32 1 9.4450 9.4401 0.5803 33 1 3.3381 8.7616 -0.7767 34 1 2.6848 8.2408 0.7950 35 1 4.2185 9.1411 0.7231 36 1 5.2629 2.2620 -0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242067038.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:10 Heat of formation + Delta-G solvation = 41.382638 kcal Electronic energy + Delta-G solvation = -19254.051427 eV Core-core repulsion = 16315.599331 eV Total energy + Delta-G solvation = -2938.452096 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.29207 -40.29278 -36.86145 -35.87101 -34.05818 -33.61688 -32.82045 -30.73618 -28.95004 -27.63276 -25.91374 -24.52335 -23.89633 -22.64237 -21.75754 -19.44038 -18.66704 -18.11725 -17.26069 -16.91265 -16.65390 -15.67985 -15.63841 -15.29286 -15.11750 -15.04085 -14.58959 -14.53619 -14.07414 -13.89822 -13.67558 -13.45324 -13.07319 -13.01401 -12.88817 -12.69531 -12.56527 -12.09485 -11.77126 -11.45933 -11.13055 -10.66988 -10.40878 -10.27460 -9.98020 -9.58773 -8.99999 -8.39924 -6.47214 -0.02538 0.46872 0.75097 1.00142 1.25371 1.38090 1.46076 2.06283 2.33975 2.54675 3.05655 3.56092 3.64696 3.71335 4.08192 4.15085 4.23353 4.30767 4.34007 4.48419 4.66721 4.69015 4.70577 4.84769 4.91633 4.96498 4.99121 5.02291 5.13004 5.18263 5.38204 5.52678 5.55630 5.69982 5.81148 5.94065 6.16587 6.22096 6.52512 6.65267 6.67973 7.26160 7.58657 8.05102 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.034655 B = 0.004434 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.759263 B = 6313.723358 C = 6951.787287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.727 5.727 3 C 0.376 3.624 4 C -0.230 4.230 5 C -0.027 4.027 6 C -0.128 4.128 7 C 0.027 3.973 8 C -0.118 4.118 9 C -0.217 4.217 10 C 0.028 3.972 11 C -0.446 4.446 12 H 0.078 0.922 13 C 0.054 3.946 14 N -0.826 5.826 15 Si 0.956 3.044 16 H -0.253 1.253 17 H -0.272 1.272 18 H -0.262 1.262 19 C 0.015 3.985 20 C -0.069 4.069 21 N -0.458 5.458 22 C 0.137 3.863 23 N -0.557 5.557 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.104 0.896 27 H 0.408 0.592 28 H 0.155 0.845 29 H 0.134 0.866 30 H 0.139 0.861 31 H 0.113 0.887 32 H 0.299 0.701 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.684 -14.237 1.124 17.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.360 5.360 3 C 0.139 3.861 4 C -0.254 4.254 5 C -0.053 4.053 6 C -0.134 4.134 7 C -0.108 4.108 8 C -0.138 4.138 9 C -0.242 4.242 10 C 0.023 3.977 11 C -0.475 4.475 12 H 0.096 0.904 13 C -0.164 4.164 14 N -0.450 5.450 15 Si 0.780 3.220 16 H -0.178 1.178 17 H -0.198 1.198 18 H -0.186 1.186 19 C -0.130 4.130 20 C -0.127 4.127 21 N -0.167 5.167 22 C -0.021 4.021 23 N -0.275 5.275 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.123 0.877 27 H 0.243 0.757 28 H 0.172 0.828 29 H 0.152 0.848 30 H 0.156 0.844 31 H 0.131 0.869 32 H 0.110 0.890 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -11.157 -14.827 1.179 18.593 hybrid contribution 1.439 0.618 0.164 1.575 sum -9.717 -14.209 1.343 17.266 Atomic orbital electron populations 1.21807 0.77135 1.04592 1.01703 1.44272 1.06869 1.04300 1.80600 1.18734 0.88248 0.87698 0.91435 1.21268 1.01806 0.90861 1.11481 1.21264 0.92978 0.98774 0.92330 1.19304 0.94035 0.92144 1.07928 1.19142 0.90202 0.90638 1.10804 1.21532 0.94334 0.98593 0.99310 1.21205 0.99259 0.93215 1.10535 1.18667 0.93709 0.93545 0.91743 1.19437 0.97749 0.95806 1.34541 0.90369 1.26780 0.95465 0.98171 0.95982 1.69676 1.08601 1.31096 1.35626 0.85609 0.78962 0.78616 0.78832 1.17811 1.19842 1.18621 1.21520 0.91054 0.93664 1.06774 1.20296 0.98717 0.92082 1.01556 1.66907 1.41098 0.97928 1.10789 1.22621 0.99951 0.85723 0.93758 1.67179 1.06871 1.31429 1.22007 0.92352 0.92322 0.87732 0.75678 0.82761 0.84776 0.84366 0.86891 0.89035 0.91956 0.91267 0.91554 0.81794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.05 9.91 127.77 1.27 2.32 16 2 N -0.73 -14.04 5.87 -366.51 -2.15 -16.19 16 3 C 0.38 10.36 7.64 133.19 1.02 11.38 16 4 C -0.23 -6.25 9.25 22.23 0.21 -6.04 16 5 C -0.03 -0.91 9.63 22.46 0.22 -0.69 16 6 C -0.13 -4.78 5.89 -19.93 -0.12 -4.89 16 7 C 0.03 1.16 6.73 41.91 0.28 1.44 16 8 C -0.12 -5.00 9.38 22.30 0.21 -4.79 16 9 C -0.22 -10.16 7.21 22.64 0.16 -10.00 16 10 C 0.03 1.41 5.11 -21.17 -0.11 1.30 16 11 C -0.45 -23.36 8.53 23.38 0.20 -23.16 16 12 H 0.08 4.28 7.23 -2.91 -0.02 4.26 16 13 C 0.05 2.71 5.42 85.27 0.46 3.18 16 14 N -0.83 -42.13 13.93 21.83 0.30 -41.83 16 15 Si 0.96 40.70 24.52 68.60 1.68 42.39 16 16 H -0.25 -10.10 6.71 99.48 0.67 -9.43 16 17 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 18 H -0.26 -11.83 6.85 99.48 0.68 -11.15 16 19 C 0.02 0.72 6.86 43.31 0.30 1.02 16 20 C -0.07 -2.78 9.59 71.24 0.68 -2.10 16 21 N -0.46 -21.00 9.38 -171.01 -1.60 -22.61 16 22 C 0.14 4.60 10.58 85.02 0.90 5.50 16 23 N -0.56 -17.64 10.39 -192.17 -2.00 -19.64 16 24 H 0.06 0.66 7.91 -2.39 -0.02 0.64 16 25 H 0.06 0.66 7.91 -2.39 -0.02 0.64 16 26 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.41 6.96 8.95 -92.70 -0.83 6.13 16 28 H 0.15 3.16 6.66 -2.91 -0.02 3.14 16 29 H 0.13 4.48 7.61 -2.91 -0.02 4.46 16 30 H 0.14 4.81 6.20 -2.91 -0.02 4.80 16 31 H 0.11 5.11 4.82 -2.91 -0.01 5.09 16 32 H 0.30 13.64 8.30 -92.70 -0.77 12.87 16 33 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.07 2.71 6.85 -2.39 -0.02 2.70 16 36 H 0.17 4.91 6.20 -2.91 -0.02 4.90 16 Total: -1.00 -61.26 299.56 2.14 -59.11 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: 0.23 Total: 24.30 kcal Atomic # 6 Polarization: -31.22 SS G_CDS: 5.68 Total: -25.54 kcal Atomic # 7 Polarization: -94.81 SS G_CDS: -5.45 Total: -100.26 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 1.68 Total: 42.39 kcal Total: -61.26 2.14 -59.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242067038.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.497 kcal (2) G-P(sol) polarization free energy of solvation -61.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds