Wall clock time and date at job start Mon Mar 30 2020 01:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38879 * 119.24377 * 2 1 4 4 C 1.36874 * 119.81704 * 179.71825 * 3 2 1 5 5 C 1.41114 * 118.40387 * 0.53939 * 4 3 2 6 6 C 1.40840 * 120.72694 * 179.70196 * 5 4 3 7 7 H 1.07997 * 119.99900 * 151.29885 * 6 5 4 8 8 C 1.40040 * 119.99710 * 331.30276 * 6 5 4 9 9 N 1.30801 * 119.99867 * 162.18327 * 8 6 5 10 10 Si 1.86800 * 120.00095 * 342.17733 * 8 6 5 11 11 H 1.48500 * 109.46658 * 90.47707 * 10 8 6 12 12 H 1.48499 * 109.47190 * 210.47754 * 10 8 6 13 13 H 1.48497 * 109.47469 * 330.48022 * 10 8 6 14 14 C 1.41943 * 118.55160 * 359.72987 * 5 4 3 15 15 C 1.47654 * 119.99695 * 180.02562 * 14 5 4 16 16 C 1.39665 * 120.48566 * 307.84663 * 15 14 5 17 17 N 1.31693 * 120.50831 * 179.97438 * 16 15 14 18 18 C 1.32601 * 121.63753 * 0.02562 * 17 16 15 19 19 N 1.38647 * 119.52797 * 180.02562 * 18 17 16 20 20 C 1.39346 * 120.94004 * 359.97438 * 18 17 16 21 21 C 1.36929 * 119.39093 * 359.69359 * 20 18 17 22 22 C 1.50699 * 120.75588 * 180.31907 * 21 20 18 23 23 N 1.31727 * 119.24317 * 180.26865 * 2 1 3 24 24 H 1.09000 * 109.46762 * 269.73104 * 1 2 3 25 25 H 1.08996 * 109.47358 * 149.73404 * 1 2 3 26 26 H 1.08997 * 109.47140 * 29.72994 * 1 2 3 27 27 H 1.08007 * 120.08789 * 359.97438 * 3 2 1 28 28 H 1.07999 * 120.79557 * 180.26411 * 4 3 2 29 29 H 0.96994 * 119.99576 * 179.97438 * 9 8 6 30 30 H 1.07998 * 119.74849 * 0.02562 * 16 15 14 31 31 H 0.97006 * 120.00276 * 0.02562 * 19 18 17 32 32 H 0.97005 * 119.99835 * 180.02562 * 19 18 17 33 33 H 1.07999 * 120.30543 * 180.02562 * 20 18 17 34 34 H 1.09003 * 109.46720 * 267.27915 * 22 21 20 35 35 H 1.08994 * 109.47325 * 27.27455 * 22 21 20 36 36 H 1.08999 * 109.46852 * 147.28089 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1855 1.2118 0.0000 4 6 3.5541 1.2255 0.0058 5 6 4.2378 -0.0090 0.0001 6 6 5.6456 -0.0519 -0.0006 7 1 6.1604 -0.8904 0.4446 8 6 6.3776 0.9927 -0.5786 9 7 7.6439 1.1431 -0.2874 10 14 5.5458 2.1711 -1.7655 11 1 4.9901 3.3232 -1.0110 12 1 6.5391 2.6602 -2.7551 13 1 4.4468 1.4669 -2.4737 14 6 3.4758 -1.2065 -0.0057 15 6 4.1583 -2.5158 -0.0112 16 6 5.1411 -2.7985 -0.9625 17 7 5.7505 -3.9659 -0.9675 18 6 5.4578 -4.9072 -0.0806 19 7 6.1271 -6.1205 -0.1258 20 6 4.4879 -4.6938 0.8968 21 6 3.8338 -3.4917 0.9434 22 6 2.7846 -3.2253 1.9919 23 7 2.1505 -1.1494 -0.0054 24 1 -0.3633 -0.0048 1.0277 25 1 -0.3634 -0.8875 -0.5179 26 1 -0.3633 0.8924 -0.5096 27 1 1.6346 2.1408 -0.0004 28 1 4.0977 2.1587 0.0102 29 1 8.1510 1.8664 -0.6880 30 1 5.4039 -2.0537 -1.6991 31 1 6.8044 -6.2760 -0.8027 32 1 5.9182 -6.8140 0.5194 33 1 4.2579 -5.4674 1.6144 34 1 1.8024 -3.4851 1.5970 35 1 2.9923 -3.8290 2.8753 36 1 2.8003 -2.1693 2.2614 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242078244.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:25 Heat of formation + Delta-G solvation = 50.165265 kcal Electronic energy + Delta-G solvation = -20104.758542 eV Core-core repulsion = 17166.687289 eV Total energy + Delta-G solvation = -2938.071253 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.77809 -38.49844 -34.70442 -34.22278 -32.96879 -31.91381 -31.24381 -28.55927 -27.74931 -27.14417 -24.28275 -22.75044 -21.91888 -20.87110 -20.17806 -17.51351 -16.94589 -16.38403 -15.97784 -15.53680 -14.73649 -14.50265 -13.78779 -13.76065 -13.56992 -13.29399 -13.25804 -12.66944 -12.47543 -12.11300 -11.98456 -11.81883 -11.71424 -11.60109 -11.21642 -10.99488 -10.80453 -10.31453 -10.18026 -9.87108 -9.52056 -8.89826 -8.81670 -8.47950 -8.18781 -7.78567 -7.13201 -7.01254 -4.59478 1.84435 2.02988 2.45411 2.69591 2.98257 3.10281 3.19617 3.82030 3.97388 4.38955 4.59038 5.19265 5.24598 5.42596 5.53091 5.71820 5.81105 5.83671 5.94665 6.07625 6.21375 6.21932 6.26907 6.34872 6.40505 6.43522 6.59109 6.65129 6.71930 6.87480 7.00016 7.23126 7.24923 7.41015 7.56685 7.72774 7.76884 7.90274 8.16282 8.39633 8.56683 8.86060 9.39797 9.86968 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.014869 B = 0.008741 C = 0.005978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.635798 B = 3202.605853 C = 4682.858614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.020 4.020 3 C -0.115 4.115 4 C -0.211 4.211 5 C 0.058 3.942 6 C -0.420 4.420 7 H 0.099 0.901 8 C 0.083 3.917 9 N -0.788 5.788 10 Si 0.912 3.088 11 H -0.267 1.267 12 H -0.287 1.287 13 H -0.246 1.246 14 C 0.055 3.945 15 C -0.090 4.090 16 C 0.177 3.823 17 N -0.550 5.550 18 C 0.385 3.615 19 N -0.860 5.860 20 C -0.247 4.247 21 C 0.008 3.992 22 C -0.100 4.100 23 N -0.437 5.437 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.102 0.898 28 H 0.112 0.888 29 H 0.289 0.711 30 H 0.159 0.841 31 H 0.398 0.602 32 H 0.401 0.599 33 H 0.119 0.881 34 H 0.074 0.926 35 H 0.053 0.947 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.937 -5.743 0.911 7.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.159 4.159 3 C -0.135 4.135 4 C -0.236 4.236 5 C 0.053 3.947 6 C -0.448 4.448 7 H 0.117 0.883 8 C -0.139 4.139 9 N -0.410 5.410 10 Si 0.738 3.262 11 H -0.193 1.193 12 H -0.214 1.214 13 H -0.169 1.169 14 C -0.087 4.087 15 C -0.095 4.095 16 C 0.019 3.981 17 N -0.268 5.268 18 C 0.149 3.851 19 N -0.404 5.404 20 C -0.272 4.272 21 C 0.000 4.000 22 C -0.157 4.157 23 N -0.145 5.145 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.120 0.880 28 H 0.129 0.871 29 H 0.100 0.900 30 H 0.176 0.824 31 H 0.227 0.773 32 H 0.230 0.770 33 H 0.137 0.863 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.546 -6.514 0.295 7.949 hybrid contribution 0.015 1.384 0.211 1.401 sum -4.531 -5.129 0.506 6.863 Atomic orbital electron populations 1.20271 0.91269 1.00997 1.00536 1.20232 0.94976 0.88314 1.12383 1.21145 0.94766 0.97552 1.00038 1.21174 0.94061 0.97594 1.10807 1.18440 0.94340 0.91078 0.90820 1.19453 0.89528 1.05369 1.30441 0.88337 1.26256 0.94762 0.96694 0.96147 1.69669 1.09041 1.28015 1.34294 0.86350 0.79620 0.80266 0.79985 1.19311 1.21431 1.16888 1.19141 0.87944 0.90687 1.10933 1.18936 0.99469 0.93476 0.97644 1.22614 0.89308 0.90903 0.95294 1.67190 1.30575 1.02629 1.26378 1.18328 0.89496 0.86778 0.90491 1.41975 1.45439 1.14002 1.39007 1.20693 1.03396 0.99469 1.03654 1.19833 0.94149 0.91829 0.94233 1.20649 0.97057 1.02536 0.95430 1.66956 1.09533 1.29043 1.08962 0.93099 0.92456 0.92940 0.88010 0.87086 0.90008 0.82399 0.77343 0.77031 0.86303 0.90695 0.92801 0.91124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.21 10.15 36.01 0.37 -0.84 16 2 C -0.02 -0.43 6.79 -82.40 -0.56 -0.99 16 3 C -0.11 -2.43 9.64 -39.84 -0.38 -2.81 16 4 C -0.21 -4.91 7.33 -38.99 -0.29 -5.20 16 5 C 0.06 1.44 5.14 -106.40 -0.55 0.89 16 6 C -0.42 -10.73 7.73 -37.92 -0.29 -11.02 16 7 H 0.10 2.71 7.01 -52.49 -0.37 2.34 16 8 C 0.08 2.06 5.43 -17.32 -0.09 1.96 16 9 N -0.79 -19.92 13.93 55.55 0.77 -19.15 16 10 Si 0.91 19.78 24.54 -169.99 -4.17 15.61 16 11 H -0.27 -5.60 6.45 56.52 0.36 -5.23 16 12 H -0.29 -6.01 7.11 56.52 0.40 -5.60 16 13 H -0.25 -5.52 7.02 56.52 0.40 -5.12 16 14 C 0.06 1.29 5.40 -82.25 -0.44 0.85 16 15 C -0.09 -1.98 5.00 -104.74 -0.52 -2.51 16 16 C 0.18 3.85 9.31 -17.08 -0.16 3.69 16 17 N -0.55 -11.21 10.39 -12.08 -0.13 -11.34 16 18 C 0.39 6.82 7.73 -155.12 -1.20 5.62 16 19 N -0.86 -11.10 9.05 31.13 0.28 -10.82 16 20 C -0.25 -4.26 9.54 -39.64 -0.38 -4.64 16 21 C 0.01 0.15 5.91 -104.31 -0.62 -0.46 16 22 C -0.10 -1.73 9.02 36.01 0.32 -1.40 16 23 N -0.44 -9.87 9.09 -5.46 -0.05 -9.92 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.05 0.76 8.07 -51.93 -0.42 0.34 16 27 H 0.10 1.84 8.06 -52.48 -0.42 1.42 16 28 H 0.11 2.53 4.50 -52.49 -0.24 2.30 16 29 H 0.29 6.61 8.29 -40.82 -0.34 6.27 16 30 H 0.16 3.51 7.48 -52.49 -0.39 3.11 16 31 H 0.40 4.72 8.95 -40.82 -0.37 4.35 16 32 H 0.40 3.89 8.81 -40.82 -0.36 3.53 16 33 H 0.12 1.67 8.06 -52.49 -0.42 1.24 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.05 0.78 8.08 -51.93 -0.42 0.36 16 36 H 0.07 1.36 7.09 -51.93 -0.37 1.00 16 LS Contribution 300.52 15.07 4.53 4.53 Total: -1.00 -28.21 300.52 -7.78 -35.99 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -4.22 Total: 11.97 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -4.80 Total: -16.87 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: 0.88 Total: -51.23 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -4.17 Total: 15.61 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.21 -7.78 -35.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242078244.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.153 kcal (2) G-P(sol) polarization free energy of solvation -28.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds