Wall clock time and date at job start Mon Mar 30 2020 01:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38879 * 119.24377 * 2 1 4 4 C 1.36874 * 119.81704 * 179.71825 * 3 2 1 5 5 C 1.41114 * 118.40387 * 0.53939 * 4 3 2 6 6 C 1.40840 * 120.72694 * 179.70196 * 5 4 3 7 7 H 1.07997 * 119.99900 * 151.29885 * 6 5 4 8 8 C 1.40040 * 119.99710 * 331.30276 * 6 5 4 9 9 N 1.30801 * 119.99867 * 162.18327 * 8 6 5 10 10 Si 1.86800 * 120.00095 * 342.17733 * 8 6 5 11 11 H 1.48500 * 109.46658 * 90.47707 * 10 8 6 12 12 H 1.48499 * 109.47190 * 210.47754 * 10 8 6 13 13 H 1.48497 * 109.47469 * 330.48022 * 10 8 6 14 14 C 1.41943 * 118.55160 * 359.72987 * 5 4 3 15 15 C 1.47654 * 119.99695 * 180.02562 * 14 5 4 16 16 C 1.39665 * 120.48566 * 307.84663 * 15 14 5 17 17 N 1.31693 * 120.50831 * 179.97438 * 16 15 14 18 18 C 1.32601 * 121.63753 * 0.02562 * 17 16 15 19 19 N 1.38647 * 119.52797 * 180.02562 * 18 17 16 20 20 C 1.39346 * 120.94004 * 359.97438 * 18 17 16 21 21 C 1.36929 * 119.39093 * 359.69359 * 20 18 17 22 22 C 1.50699 * 120.75588 * 180.31907 * 21 20 18 23 23 N 1.31727 * 119.24317 * 180.26865 * 2 1 3 24 24 H 1.09000 * 109.46762 * 269.73104 * 1 2 3 25 25 H 1.08996 * 109.47358 * 149.73404 * 1 2 3 26 26 H 1.08997 * 109.47140 * 29.72994 * 1 2 3 27 27 H 1.08007 * 120.08789 * 359.97438 * 3 2 1 28 28 H 1.07999 * 120.79557 * 180.26411 * 4 3 2 29 29 H 0.96994 * 119.99576 * 179.97438 * 9 8 6 30 30 H 1.07998 * 119.74849 * 0.02562 * 16 15 14 31 31 H 0.97006 * 120.00276 * 0.02562 * 19 18 17 32 32 H 0.97005 * 119.99835 * 180.02562 * 19 18 17 33 33 H 1.07999 * 120.30543 * 180.02562 * 20 18 17 34 34 H 1.09003 * 109.46720 * 267.27915 * 22 21 20 35 35 H 1.08994 * 109.47325 * 27.27455 * 22 21 20 36 36 H 1.08999 * 109.46852 * 147.28089 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1855 1.2118 0.0000 4 6 3.5541 1.2255 0.0058 5 6 4.2378 -0.0090 0.0001 6 6 5.6456 -0.0519 -0.0006 7 1 6.1604 -0.8904 0.4446 8 6 6.3776 0.9927 -0.5786 9 7 7.6439 1.1431 -0.2874 10 14 5.5458 2.1711 -1.7655 11 1 4.9901 3.3232 -1.0110 12 1 6.5391 2.6602 -2.7551 13 1 4.4468 1.4669 -2.4737 14 6 3.4758 -1.2065 -0.0057 15 6 4.1583 -2.5158 -0.0112 16 6 5.1411 -2.7985 -0.9625 17 7 5.7505 -3.9659 -0.9675 18 6 5.4578 -4.9072 -0.0806 19 7 6.1271 -6.1205 -0.1258 20 6 4.4879 -4.6938 0.8968 21 6 3.8338 -3.4917 0.9434 22 6 2.7846 -3.2253 1.9919 23 7 2.1505 -1.1494 -0.0054 24 1 -0.3633 -0.0048 1.0277 25 1 -0.3634 -0.8875 -0.5179 26 1 -0.3633 0.8924 -0.5096 27 1 1.6346 2.1408 -0.0004 28 1 4.0977 2.1587 0.0102 29 1 8.1510 1.8664 -0.6880 30 1 5.4039 -2.0537 -1.6991 31 1 6.8044 -6.2760 -0.8027 32 1 5.9182 -6.8140 0.5194 33 1 4.2579 -5.4674 1.6144 34 1 1.8024 -3.4851 1.5970 35 1 2.9923 -3.8290 2.8753 36 1 2.8003 -2.1693 2.2614 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242078244.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:24 Heat of formation + Delta-G solvation = 31.909790 kcal Electronic energy + Delta-G solvation = -20105.550159 eV Core-core repulsion = 17166.687289 eV Total energy + Delta-G solvation = -2938.862870 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.33264 -40.15707 -36.18017 -35.92536 -34.43341 -33.60641 -32.90869 -30.04081 -29.35032 -28.59508 -25.94149 -24.37872 -23.54911 -22.47952 -21.75552 -19.36293 -18.30774 -17.75295 -17.67085 -17.20688 -16.36298 -15.92252 -15.42756 -15.33560 -15.12393 -14.89036 -14.82794 -14.29569 -13.87131 -13.69895 -13.53060 -13.38962 -13.27139 -13.01646 -12.78522 -12.55239 -12.48464 -11.99417 -11.82172 -11.42337 -11.30974 -10.45710 -10.30962 -10.19410 -9.91006 -9.47386 -8.96313 -8.48593 -6.46781 0.22670 0.51310 0.73496 0.98010 1.21775 1.36552 1.44598 2.05265 2.59426 2.74163 3.04098 3.49386 3.70036 3.86235 4.06001 4.22223 4.31773 4.36593 4.49054 4.57590 4.72782 4.79327 4.86410 4.90354 4.96698 4.98546 5.02840 5.13547 5.22745 5.26986 5.38892 5.60942 5.67448 5.74913 5.90036 6.00942 6.26790 6.51158 6.58409 6.67966 6.70017 7.47869 7.64701 8.10110 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.014869 B = 0.008741 C = 0.005978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.635798 B = 3202.605853 C = 4682.858614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.013 4.013 3 C -0.122 4.122 4 C -0.220 4.220 5 C 0.037 3.963 6 C -0.444 4.444 7 H 0.061 0.939 8 C 0.051 3.949 9 N -0.831 5.831 10 Si 0.961 3.039 11 H -0.250 1.250 12 H -0.275 1.275 13 H -0.261 1.261 14 C 0.052 3.948 15 C -0.123 4.123 16 C 0.162 3.838 17 N -0.572 5.572 18 C 0.384 3.616 19 N -0.837 5.837 20 C -0.239 4.239 21 C -0.001 4.001 22 C -0.091 4.091 23 N -0.450 5.450 24 H 0.070 0.930 25 H 0.060 0.940 26 H 0.079 0.921 27 H 0.140 0.860 28 H 0.113 0.887 29 H 0.297 0.703 30 H 0.136 0.864 31 H 0.406 0.594 32 H 0.420 0.580 33 H 0.161 0.839 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.382 -6.571 1.492 9.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.152 4.152 3 C -0.142 4.142 4 C -0.246 4.246 5 C 0.032 3.968 6 C -0.473 4.473 7 H 0.079 0.921 8 C -0.166 4.166 9 N -0.456 5.456 10 Si 0.784 3.216 11 H -0.176 1.176 12 H -0.201 1.201 13 H -0.185 1.185 14 C -0.088 4.088 15 C -0.129 4.129 16 C 0.005 3.995 17 N -0.292 5.292 18 C 0.145 3.855 19 N -0.382 5.382 20 C -0.263 4.263 21 C -0.010 4.010 22 C -0.148 4.148 23 N -0.159 5.159 24 H 0.089 0.911 25 H 0.079 0.921 26 H 0.098 0.902 27 H 0.158 0.842 28 H 0.131 0.869 29 H 0.107 0.893 30 H 0.153 0.847 31 H 0.235 0.765 32 H 0.253 0.747 33 H 0.179 0.821 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.971 -7.384 0.891 10.194 hybrid contribution 0.599 1.427 0.088 1.550 sum -6.372 -5.957 0.979 8.778 Atomic orbital electron populations 1.20380 0.87572 1.02582 1.02273 1.21194 0.97492 0.87883 1.08660 1.21562 0.94057 0.99389 0.99176 1.21367 0.95327 0.97112 1.10780 1.18630 0.94147 0.92375 0.91654 1.19194 0.90186 1.05116 1.32805 0.92106 1.26819 0.95119 0.97725 0.96929 1.69693 1.10123 1.29564 1.36220 0.85607 0.78569 0.78914 0.78491 1.17563 1.20119 1.18475 1.19433 0.88471 0.91202 1.09709 1.19033 1.00559 0.94005 0.99292 1.22319 0.90137 0.91413 0.95644 1.67138 1.31190 1.02857 1.27965 1.18690 0.89594 0.87427 0.89773 1.41925 1.44380 1.12629 1.39282 1.21058 1.02047 0.99500 1.03737 1.20165 0.94763 0.92015 0.94023 1.20609 0.96721 1.01426 0.96012 1.67112 1.08985 1.29920 1.09845 0.91125 0.92101 0.90211 0.84208 0.86913 0.89264 0.84664 0.76456 0.74726 0.82122 0.89985 0.89491 0.93773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.05 10.15 71.24 0.72 -1.33 16 2 C -0.01 -0.51 6.79 42.73 0.29 -0.22 16 3 C -0.12 -4.90 9.64 22.10 0.21 -4.69 16 4 C -0.22 -10.22 7.33 22.66 0.17 -10.05 16 5 C 0.04 1.87 5.14 -21.02 -0.11 1.76 16 6 C -0.44 -24.22 7.73 23.34 0.18 -24.04 16 7 H 0.06 3.67 7.01 -2.91 -0.02 3.64 16 8 C 0.05 2.66 5.43 85.28 0.46 3.12 16 9 N -0.83 -44.32 13.93 21.84 0.30 -44.01 16 10 Si 0.96 41.60 24.54 68.60 1.68 43.28 16 11 H -0.25 -10.06 6.45 99.48 0.64 -9.42 16 12 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 13 H -0.26 -11.76 7.02 99.48 0.70 -11.07 16 14 C 0.05 2.53 5.40 42.43 0.23 2.76 16 15 C -0.12 -5.61 5.00 -19.94 -0.10 -5.71 16 16 C 0.16 7.48 9.31 85.06 0.79 8.27 16 17 N -0.57 -23.92 10.39 -192.12 -2.00 -25.92 16 18 C 0.38 13.11 7.73 133.18 1.03 14.14 16 19 N -0.84 -19.50 9.05 -55.41 -0.50 -20.01 16 20 C -0.24 -7.72 9.54 22.23 0.21 -7.51 16 21 C 0.00 -0.06 5.91 -19.66 -0.12 -0.17 16 22 C -0.09 -3.00 9.02 71.24 0.64 -2.35 16 23 N -0.45 -20.06 9.09 -171.19 -1.56 -21.62 16 24 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.08 1.91 8.07 -2.39 -0.02 1.90 16 27 H 0.14 4.49 8.06 -2.91 -0.02 4.47 16 28 H 0.11 5.10 4.50 -2.91 -0.01 5.09 16 29 H 0.30 14.17 8.29 -92.71 -0.77 13.41 16 30 H 0.14 6.64 7.48 -2.91 -0.02 6.62 16 31 H 0.41 8.76 8.95 -92.70 -0.83 7.93 16 32 H 0.42 6.62 8.81 -92.70 -0.82 5.80 16 33 H 0.16 3.77 8.06 -2.91 -0.02 3.74 16 34 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.09 2.24 8.08 -2.39 -0.02 2.22 16 36 H 0.04 1.68 7.09 -2.39 -0.02 1.66 16 Total: -1.00 -64.67 300.52 1.97 -62.70 By element: Atomic # 1 Polarization: 32.17 SS G_CDS: -0.59 Total: 31.58 kcal Atomic # 6 Polarization: -30.63 SS G_CDS: 4.62 Total: -26.02 kcal Atomic # 7 Polarization: -107.80 SS G_CDS: -3.75 Total: -111.55 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 1.68 Total: 43.28 kcal Total: -64.67 1.97 -62.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242078244.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.614 kcal (2) G-P(sol) polarization free energy of solvation -64.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds