Wall clock time and date at job start Mon Mar 30 2020 01:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38873 * 119.24775 * 2 1 4 4 C 1.36883 * 119.79713 * 180.02562 * 3 2 1 5 5 C 1.41121 * 118.39757 * 359.73615 * 4 3 2 6 6 C 1.40886 * 120.72206 * 180.28157 * 5 4 3 7 7 H 1.07999 * 119.99540 * 151.36989 * 6 5 4 8 8 C 1.40067 * 119.99913 * 331.37423 * 6 5 4 9 9 N 1.30772 * 120.00253 * 348.70120 * 8 6 5 10 10 Si 1.86799 * 119.99911 * 168.70434 * 8 6 5 11 11 H 1.48504 * 109.47396 * 59.99683 * 10 8 6 12 12 H 1.48502 * 109.47558 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47018 * 299.99779 * 10 8 6 14 14 C 1.41871 * 118.55899 * 0.50240 * 5 4 3 15 15 C 1.47832 * 119.98735 * 179.75978 * 14 5 4 16 16 C 1.39708 * 120.53433 * 316.29470 * 15 14 5 17 17 N 1.31645 * 120.71746 * 180.02562 * 16 15 14 18 18 C 1.31896 * 121.96430 * 359.97438 * 17 16 15 19 19 C 1.50696 * 119.50491 * 179.97438 * 18 17 16 20 20 C 1.39039 * 120.98808 * 0.02562 * 18 17 16 21 21 N 1.39726 * 120.41545 * 180.02562 * 20 18 17 22 22 C 1.39009 * 119.16824 * 359.97438 * 20 18 17 23 23 N 1.31745 * 119.25115 * 179.97438 * 2 1 3 24 24 H 1.09003 * 109.46740 * 270.01904 * 1 2 3 25 25 H 1.09003 * 109.47548 * 30.01363 * 1 2 3 26 26 H 1.08997 * 109.47321 * 150.02229 * 1 2 3 27 27 H 1.07998 * 120.09967 * 0.02808 * 3 2 1 28 28 H 1.08000 * 120.80124 * 179.97438 * 4 3 2 29 29 H 0.96998 * 119.99809 * 180.02562 * 9 8 6 30 30 H 1.08003 * 119.63607 * 0.28415 * 16 15 14 31 31 H 1.08997 * 109.46941 * 90.00395 * 19 18 17 32 32 H 1.09002 * 109.47397 * 210.00309 * 19 18 17 33 33 H 1.09003 * 109.47475 * 330.00372 * 19 18 17 34 34 H 0.97004 * 120.00162 * 359.97438 * 21 20 18 35 35 H 0.96997 * 120.00376 * 179.97438 * 21 20 18 36 36 H 1.08007 * 120.89039 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1855 1.2117 0.0000 4 6 3.5542 1.2248 -0.0005 5 6 4.2373 -0.0101 0.0046 6 6 5.6454 -0.0537 0.0103 7 1 6.1579 -0.8901 0.4622 8 6 6.3807 0.9877 -0.5700 9 7 5.7763 1.8836 -1.3063 10 14 8.2247 1.0967 -0.2923 11 1 8.8767 -0.1337 -0.8083 12 1 8.7643 2.2800 -1.0092 13 1 8.4994 1.2302 1.1610 14 6 3.4752 -1.2067 -0.0008 15 6 4.1582 -2.5177 -0.0009 16 6 5.2608 -2.7435 -0.8287 17 7 5.8715 -3.9098 -0.8321 18 6 5.4769 -4.9068 -0.0641 19 6 6.2165 -6.2189 -0.1129 20 6 4.3881 -4.7657 0.7891 21 7 3.9807 -5.8298 1.5979 22 6 3.7107 -3.5525 0.8281 23 7 2.1507 -1.1495 0.0005 24 1 -0.3633 0.0003 1.0277 25 1 -0.3634 0.8899 -0.5140 26 1 -0.3634 -0.8901 -0.5135 27 1 1.6349 2.1408 0.0005 28 1 4.0984 2.1577 -0.0010 29 1 6.2856 2.6046 -1.7085 30 1 5.6186 -1.9513 -1.4697 31 1 7.0223 -6.2093 0.6210 32 1 5.5279 -7.0328 0.1142 33 1 6.6342 -6.3638 -1.1093 34 1 4.4580 -6.6736 1.5661 35 1 3.2206 -5.7246 2.1912 36 1 2.8617 -3.4122 1.4807 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242407032.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:06 Heat of formation + Delta-G solvation = 45.369490 kcal Electronic energy + Delta-G solvation = -19810.900279 eV Core-core repulsion = 16872.621066 eV Total energy + Delta-G solvation = -2938.279213 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.68025 -38.37235 -34.82050 -34.28477 -33.03597 -31.04648 -30.48511 -29.14821 -28.09724 -26.57917 -24.27309 -22.40807 -22.23239 -20.71076 -20.09465 -17.46482 -17.08036 -16.26212 -15.61305 -15.21046 -14.62934 -14.46954 -14.14903 -13.90695 -13.70218 -13.20283 -12.58230 -12.41272 -12.18723 -11.93203 -11.87394 -11.77222 -11.52935 -11.47517 -11.30156 -11.02250 -10.98064 -10.71240 -10.59471 -9.92174 -9.43328 -8.91266 -8.71426 -8.21736 -8.11778 -7.44183 -7.05584 -6.89021 -4.54802 1.72719 2.20614 2.60857 2.96359 2.99876 3.04248 3.14778 3.81735 4.15554 4.47244 4.61802 5.02789 5.30383 5.39881 5.48377 5.76721 5.85985 5.93520 5.96442 6.02265 6.06509 6.22280 6.34254 6.42800 6.46521 6.52921 6.60807 6.77037 6.92137 6.98315 7.13029 7.24659 7.34688 7.62460 7.72647 7.83232 7.88667 8.00398 8.33030 8.55488 8.61112 8.86875 9.52525 9.96621 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.012718 B = 0.008523 C = 0.005357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.053809 B = 3284.248013 C = 5225.096369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.007 4.007 3 C -0.143 4.143 4 C -0.123 4.123 5 C 0.086 3.914 6 C -0.437 4.437 7 H 0.088 0.912 8 C 0.075 3.925 9 N -0.787 5.787 10 Si 0.911 3.089 11 H -0.258 1.258 12 H -0.276 1.276 13 H -0.262 1.262 14 C 0.015 3.985 15 C 0.020 3.980 16 C 0.071 3.929 17 N -0.454 5.454 18 C 0.021 3.979 19 C -0.086 4.086 20 C 0.158 3.842 21 N -0.879 5.879 22 C -0.147 4.147 23 N -0.448 5.448 24 H 0.049 0.951 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.099 0.901 28 H 0.129 0.871 29 H 0.286 0.714 30 H 0.164 0.836 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.393 0.607 35 H 0.394 0.606 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.946 -6.987 3.419 7.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.150 4.150 3 C -0.163 4.163 4 C -0.149 4.149 5 C 0.081 3.919 6 C -0.466 4.466 7 H 0.106 0.894 8 C -0.145 4.145 9 N -0.411 5.411 10 Si 0.735 3.265 11 H -0.182 1.182 12 H -0.201 1.201 13 H -0.187 1.187 14 C -0.123 4.123 15 C 0.016 3.984 16 C -0.091 4.091 17 N -0.162 5.162 18 C -0.121 4.121 19 C -0.144 4.144 20 C 0.053 3.947 21 N -0.421 5.421 22 C -0.177 4.177 23 N -0.156 5.156 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.117 0.883 28 H 0.147 0.853 29 H 0.097 0.903 30 H 0.181 0.819 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.223 0.777 35 H 0.221 0.779 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.623 -7.633 2.679 8.113 hybrid contribution 0.357 1.000 0.873 1.375 sum -0.266 -6.633 3.553 7.529 Atomic orbital electron populations 1.20284 0.91515 1.00958 1.00396 1.20263 0.94847 0.88530 1.11319 1.21271 0.95469 0.97137 1.02410 1.21441 0.92561 0.98891 1.02023 1.18320 0.94095 0.90747 0.88740 1.19594 0.90955 1.05008 1.31076 0.89408 1.25993 1.01767 0.93987 0.92731 1.69725 1.38957 1.10964 1.21498 0.86278 0.81257 0.79117 0.79891 1.18219 1.20108 1.18673 1.19298 0.88334 0.90912 1.13770 1.19192 0.94016 0.91827 0.93331 1.22870 0.93625 0.93575 0.99012 1.67274 1.28976 1.00071 1.19898 1.20570 0.96631 0.96489 0.98393 1.20398 0.98908 0.92174 1.02893 1.18424 0.94665 0.88831 0.92779 1.42339 1.38119 1.13683 1.47992 1.21092 1.01850 0.91766 1.03019 1.66816 1.09571 1.29320 1.09894 0.93200 0.92854 0.92608 0.88255 0.85319 0.90277 0.81906 0.91801 0.92369 0.91075 0.77742 0.77859 0.85711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.31 10.15 36.00 0.37 -0.95 16 2 C -0.01 -0.17 6.79 -82.40 -0.56 -0.72 16 3 C -0.14 -3.22 9.64 -39.84 -0.38 -3.61 16 4 C -0.12 -3.05 8.72 -38.98 -0.34 -3.39 16 5 C 0.09 2.19 5.54 -106.41 -0.59 1.60 16 6 C -0.44 -10.87 6.72 -37.89 -0.25 -11.12 16 7 H 0.09 2.18 6.50 -52.49 -0.34 1.84 16 8 C 0.07 1.76 5.26 -17.32 -0.09 1.67 16 9 N -0.79 -18.98 10.90 55.55 0.61 -18.38 16 10 Si 0.91 18.03 29.58 -169.99 -5.03 13.00 16 11 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 12 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 13 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 14 C 0.02 0.38 6.45 -82.24 -0.53 -0.15 16 15 C 0.02 0.45 5.26 -104.79 -0.55 -0.10 16 16 C 0.07 1.59 9.05 -17.08 -0.15 1.43 16 17 N -0.45 -9.48 10.25 -8.94 -0.09 -9.57 16 18 C 0.02 0.38 6.80 -82.27 -0.56 -0.18 16 19 C -0.09 -1.15 9.73 36.00 0.35 -0.80 16 20 C 0.16 2.74 6.75 -83.68 -0.56 2.17 16 21 N -0.88 -11.00 8.99 32.47 0.29 -10.71 16 22 C -0.15 -2.94 9.68 -38.66 -0.37 -3.31 16 23 N -0.45 -10.87 10.06 -5.44 -0.05 -10.92 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.05 0.83 8.07 -51.93 -0.42 0.42 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 28 H 0.13 3.21 6.33 -52.49 -0.33 2.87 16 29 H 0.29 6.30 8.29 -40.82 -0.34 5.96 16 30 H 0.16 3.83 6.74 -52.48 -0.35 3.48 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.62 6.52 -51.93 -0.34 0.28 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.39 3.95 6.82 -40.82 -0.28 3.68 16 35 H 0.39 4.27 8.85 -40.82 -0.36 3.91 16 36 H 0.12 2.42 8.06 -52.48 -0.42 2.00 16 LS Contribution 304.48 15.07 4.59 4.59 Total: -1.00 -28.10 304.48 -8.02 -36.12 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -4.10 Total: 13.34 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: -4.24 Total: -17.47 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: 0.75 Total: -49.58 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.10 -8.02 -36.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242407032.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.489 kcal (2) G-P(sol) polarization free energy of solvation -28.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds