Wall clock time and date at job start Mon Mar 30 2020 01:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38873 * 119.24775 * 2 1 4 4 C 1.36883 * 119.79713 * 180.02562 * 3 2 1 5 5 C 1.41121 * 118.39757 * 359.73615 * 4 3 2 6 6 C 1.40886 * 120.72206 * 180.28157 * 5 4 3 7 7 H 1.07999 * 119.99540 * 151.36989 * 6 5 4 8 8 C 1.40067 * 119.99913 * 331.37423 * 6 5 4 9 9 N 1.30772 * 120.00253 * 348.70120 * 8 6 5 10 10 Si 1.86799 * 119.99911 * 168.70434 * 8 6 5 11 11 H 1.48504 * 109.47396 * 59.99683 * 10 8 6 12 12 H 1.48502 * 109.47558 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47018 * 299.99779 * 10 8 6 14 14 C 1.41871 * 118.55899 * 0.50240 * 5 4 3 15 15 C 1.47832 * 119.98735 * 179.75978 * 14 5 4 16 16 C 1.39708 * 120.53433 * 316.29470 * 15 14 5 17 17 N 1.31645 * 120.71746 * 180.02562 * 16 15 14 18 18 C 1.31896 * 121.96430 * 359.97438 * 17 16 15 19 19 C 1.50696 * 119.50491 * 179.97438 * 18 17 16 20 20 C 1.39039 * 120.98808 * 0.02562 * 18 17 16 21 21 N 1.39726 * 120.41545 * 180.02562 * 20 18 17 22 22 C 1.39009 * 119.16824 * 359.97438 * 20 18 17 23 23 N 1.31745 * 119.25115 * 179.97438 * 2 1 3 24 24 H 1.09003 * 109.46740 * 270.01904 * 1 2 3 25 25 H 1.09003 * 109.47548 * 30.01363 * 1 2 3 26 26 H 1.08997 * 109.47321 * 150.02229 * 1 2 3 27 27 H 1.07998 * 120.09967 * 0.02808 * 3 2 1 28 28 H 1.08000 * 120.80124 * 179.97438 * 4 3 2 29 29 H 0.96998 * 119.99809 * 180.02562 * 9 8 6 30 30 H 1.08003 * 119.63607 * 0.28415 * 16 15 14 31 31 H 1.08997 * 109.46941 * 90.00395 * 19 18 17 32 32 H 1.09002 * 109.47397 * 210.00309 * 19 18 17 33 33 H 1.09003 * 109.47475 * 330.00372 * 19 18 17 34 34 H 0.97004 * 120.00162 * 359.97438 * 21 20 18 35 35 H 0.96997 * 120.00376 * 179.97438 * 21 20 18 36 36 H 1.08007 * 120.89039 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1855 1.2117 0.0000 4 6 3.5542 1.2248 -0.0005 5 6 4.2373 -0.0101 0.0046 6 6 5.6454 -0.0537 0.0103 7 1 6.1579 -0.8901 0.4622 8 6 6.3807 0.9877 -0.5700 9 7 5.7763 1.8836 -1.3063 10 14 8.2247 1.0967 -0.2923 11 1 8.8767 -0.1337 -0.8083 12 1 8.7643 2.2800 -1.0092 13 1 8.4994 1.2302 1.1610 14 6 3.4752 -1.2067 -0.0008 15 6 4.1582 -2.5177 -0.0009 16 6 5.2608 -2.7435 -0.8287 17 7 5.8715 -3.9098 -0.8321 18 6 5.4769 -4.9068 -0.0641 19 6 6.2165 -6.2189 -0.1129 20 6 4.3881 -4.7657 0.7891 21 7 3.9807 -5.8298 1.5979 22 6 3.7107 -3.5525 0.8281 23 7 2.1507 -1.1495 0.0005 24 1 -0.3633 0.0003 1.0277 25 1 -0.3634 0.8899 -0.5140 26 1 -0.3634 -0.8901 -0.5135 27 1 1.6349 2.1408 0.0005 28 1 4.0984 2.1577 -0.0010 29 1 6.2856 2.6046 -1.7085 30 1 5.6186 -1.9513 -1.4697 31 1 7.0223 -6.2093 0.6210 32 1 5.5279 -7.0328 0.1142 33 1 6.6342 -6.3638 -1.1093 34 1 4.4580 -6.6736 1.5661 35 1 3.2206 -5.7246 2.1912 36 1 2.8617 -3.4122 1.4807 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242407032.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:06 Heat of formation + Delta-G solvation = 27.713014 kcal Electronic energy + Delta-G solvation = -19811.665921 eV Core-core repulsion = 16872.621066 eV Total energy + Delta-G solvation = -2939.044855 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.24947 -40.09600 -36.33713 -35.92051 -34.62007 -32.79087 -32.07035 -30.54314 -29.71665 -28.08627 -25.96331 -23.95895 -23.85857 -22.46097 -21.71128 -19.29104 -18.43500 -17.73454 -17.33553 -16.73200 -16.33111 -15.94968 -15.69471 -15.38316 -15.27255 -14.81531 -14.26188 -13.87710 -13.73767 -13.54014 -13.22293 -13.13599 -13.07155 -13.00406 -12.84397 -12.63803 -12.58700 -12.20414 -12.08940 -11.69720 -11.19399 -10.57279 -10.30860 -9.99647 -9.94327 -9.19158 -8.69988 -8.38895 -6.40216 0.10281 0.64191 0.86395 1.17056 1.36504 1.46765 1.50193 2.16568 2.69058 2.96358 3.03635 3.53722 3.71976 3.84080 3.95740 4.26324 4.37330 4.41208 4.60801 4.67646 4.76484 4.81207 4.85846 4.92271 4.98149 5.00884 5.09899 5.20284 5.25496 5.30346 5.37191 5.62305 5.77967 5.84737 5.97665 6.06310 6.47079 6.52371 6.71924 6.78081 7.02809 7.30738 7.70061 8.22179 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.012718 B = 0.008523 C = 0.005357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.053809 B = 3284.248013 C = 5225.096369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.015 4.015 3 C -0.146 4.146 4 C -0.144 4.144 5 C 0.056 3.944 6 C -0.457 4.457 7 H 0.077 0.923 8 C 0.041 3.959 9 N -0.815 5.815 10 Si 0.974 3.026 11 H -0.263 1.263 12 H -0.262 1.262 13 H -0.260 1.260 14 C 0.002 3.998 15 C -0.005 4.005 16 C 0.048 3.952 17 N -0.467 5.467 18 C 0.019 3.981 19 C -0.084 4.084 20 C 0.174 3.826 21 N -0.854 5.854 22 C -0.158 4.158 23 N -0.464 5.464 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.057 0.943 27 H 0.130 0.870 28 H 0.119 0.881 29 H 0.293 0.707 30 H 0.137 0.863 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.411 0.589 35 H 0.406 0.594 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.239 -8.870 4.391 9.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.158 4.158 3 C -0.166 4.166 4 C -0.170 4.170 5 C 0.051 3.949 6 C -0.486 4.486 7 H 0.095 0.905 8 C -0.176 4.176 9 N -0.440 5.440 10 Si 0.795 3.205 11 H -0.187 1.187 12 H -0.186 1.186 13 H -0.184 1.184 14 C -0.136 4.136 15 C -0.008 4.008 16 C -0.112 4.112 17 N -0.176 5.176 18 C -0.125 4.125 19 C -0.142 4.142 20 C 0.066 3.934 21 N -0.397 5.397 22 C -0.189 4.189 23 N -0.173 5.173 24 H 0.087 0.913 25 H 0.096 0.904 26 H 0.076 0.924 27 H 0.148 0.852 28 H 0.137 0.863 29 H 0.104 0.896 30 H 0.155 0.845 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.243 0.757 35 H 0.236 0.764 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.944 -9.535 3.669 10.260 hybrid contribution 0.338 1.402 0.616 1.568 sum -0.606 -8.133 4.285 9.213 Atomic orbital electron populations 1.20349 0.87902 1.02309 1.02045 1.21124 0.97323 0.88045 1.09272 1.21600 0.94858 0.98698 1.01464 1.21494 0.93725 0.98349 1.03415 1.18651 0.94879 0.91554 0.89788 1.19597 0.91095 1.05572 1.32302 0.90481 1.26683 1.05593 0.93288 0.92024 1.69758 1.40576 1.11581 1.22113 0.85347 0.76197 0.79170 0.79819 1.18704 1.18567 1.18392 1.19680 0.88803 0.91812 1.13297 1.19186 0.94685 0.92003 0.94960 1.22439 0.94633 0.94058 1.00030 1.67267 1.29243 1.00135 1.20954 1.21408 0.96682 0.97399 0.96987 1.20551 0.99716 0.90193 1.03717 1.18388 0.93617 0.88965 0.92421 1.42253 1.38113 1.12923 1.46417 1.21118 1.02419 0.92343 1.03023 1.66936 1.09385 1.30201 1.10781 0.91268 0.90411 0.92351 0.85237 0.86275 0.89564 0.84534 0.90062 0.89002 0.90933 0.75677 0.76409 0.85430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.29 10.15 71.23 0.72 -1.57 16 2 C -0.02 -0.69 6.79 42.72 0.29 -0.40 16 3 C -0.15 -6.64 9.64 22.10 0.21 -6.43 16 4 C -0.14 -7.39 8.72 22.66 0.20 -7.19 16 5 C 0.06 3.00 5.54 -21.02 -0.12 2.88 16 6 C -0.46 -24.02 6.72 23.36 0.16 -23.86 16 7 H 0.08 4.09 6.50 -2.91 -0.02 4.07 16 8 C 0.04 1.99 5.26 85.29 0.45 2.44 16 9 N -0.82 -40.84 10.90 21.85 0.24 -40.60 16 10 Si 0.97 38.00 29.58 68.60 2.03 40.02 16 11 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 12 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 13 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 14 C 0.00 0.10 6.45 42.47 0.27 0.37 16 15 C 0.00 -0.23 5.26 -19.97 -0.11 -0.33 16 16 C 0.05 2.29 9.05 85.08 0.77 3.06 16 17 N -0.47 -19.71 10.25 -182.21 -1.87 -21.58 16 18 C 0.02 0.65 6.80 42.74 0.29 0.94 16 19 C -0.08 -1.96 9.73 71.23 0.69 -1.26 16 20 C 0.17 5.69 6.75 38.26 0.26 5.94 16 21 N -0.85 -18.16 8.99 -51.20 -0.46 -18.62 16 22 C -0.16 -6.32 9.68 22.87 0.22 -6.10 16 23 N -0.46 -22.95 10.06 -171.13 -1.72 -24.67 16 24 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.08 2.21 8.07 -2.39 -0.02 2.19 16 26 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.13 4.94 8.06 -2.91 -0.02 4.92 16 28 H 0.12 6.22 6.33 -2.91 -0.02 6.20 16 29 H 0.29 13.28 8.29 -92.71 -0.77 12.51 16 30 H 0.14 7.00 6.74 -2.91 -0.02 6.98 16 31 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.09 1.50 6.52 -2.39 -0.02 1.49 16 33 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.41 6.24 6.82 -92.71 -0.63 5.61 16 35 H 0.41 7.31 8.85 -92.71 -0.82 6.49 16 36 H 0.13 4.91 8.06 -2.91 -0.02 4.89 16 Total: -1.00 -64.17 304.48 2.22 -61.96 By element: Atomic # 1 Polarization: 35.30 SS G_CDS: -0.32 Total: 34.98 kcal Atomic # 6 Polarization: -35.82 SS G_CDS: 4.32 Total: -31.50 kcal Atomic # 7 Polarization: -101.65 SS G_CDS: -3.81 Total: -105.46 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 2.03 Total: 40.02 kcal Total: -64.17 2.22 -61.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242407032.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.670 kcal (2) G-P(sol) polarization free energy of solvation -64.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds