Wall clock time and date at job start Mon Mar 30 2020 01:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31893 * 119.50685 * 2 1 4 4 C 1.31660 * 121.95192 * 179.70283 * 3 2 1 5 5 C 1.39649 * 120.72470 * 0.58524 * 4 3 2 6 6 C 1.47976 * 120.52541 * 179.72784 * 5 4 3 7 7 C 1.39895 * 119.44712 * 359.97205 * 6 5 4 8 8 C 1.36612 * 119.46469 * 180.27844 * 7 6 5 9 9 C 1.41304 * 118.41331 * 359.48097 * 8 7 6 10 10 C 1.41055 * 120.55234 * 180.27753 * 9 8 7 11 11 H 1.07995 * 119.99742 * 154.68030 * 10 9 8 12 12 C 1.40024 * 120.00200 * 334.67809 * 10 9 8 13 13 N 1.30796 * 120.00057 * 343.67729 * 12 10 9 14 14 Si 1.86800 * 120.00167 * 163.67357 * 12 10 9 15 15 H 1.48495 * 109.47036 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47112 * 120.00113 * 14 12 10 17 17 H 1.48499 * 109.46974 * 240.00057 * 14 12 10 18 18 C 1.40943 * 118.88997 * 0.25459 * 9 8 7 19 19 C 1.50706 * 119.79898 * 179.97438 * 18 9 8 20 20 N 1.31263 * 120.40295 * 0.02562 * 18 9 8 21 21 C 1.39869 * 118.95396 * 359.45414 * 5 4 3 22 22 C 1.39026 * 119.51295 * 180.02562 * 2 1 3 23 23 N 1.39729 * 120.41995 * 359.97304 * 22 2 1 24 24 H 1.09000 * 109.46914 * 269.97962 * 1 2 3 25 25 H 1.09005 * 109.47540 * 29.97551 * 1 2 3 26 26 H 1.09000 * 109.46964 * 149.98080 * 1 2 3 27 27 H 1.08002 * 119.63836 * 180.29144 * 4 3 2 28 28 H 1.07996 * 120.26637 * 0.03063 * 7 6 5 29 29 H 1.07999 * 120.79154 * 179.75943 * 8 7 6 30 30 H 0.97000 * 120.00022 * 179.97438 * 13 12 10 31 31 H 1.08998 * 109.46586 * 89.99830 * 19 18 9 32 32 H 1.08999 * 109.47405 * 210.00127 * 19 18 9 33 33 H 1.08997 * 109.47038 * 330.00044 * 19 18 9 34 34 H 1.07997 * 120.88678 * 180.27137 * 21 5 4 35 35 H 0.96997 * 119.99513 * 180.02562 * 23 22 2 36 36 H 0.97001 * 120.00051 * 0.02788 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1566 1.1479 0.0000 4 6 3.4720 1.2040 0.0058 5 6 4.2361 0.0351 0.0000 6 6 5.7143 0.1035 0.0005 7 6 6.3450 1.3521 0.0062 8 6 7.7097 1.4156 0.0009 9 6 8.4391 0.2054 0.0009 10 6 9.8496 0.2184 0.0014 11 1 10.3971 -0.6221 0.4014 12 6 10.5398 1.3210 -0.5167 13 7 9.9178 2.1826 -1.2793 14 14 12.3491 1.5615 -0.1189 15 1 12.8146 0.4560 0.7564 16 1 13.1370 1.5610 -1.3777 17 1 12.5340 2.8585 0.5802 18 6 7.7337 -1.0148 0.0009 19 6 8.4911 -2.3177 0.0003 20 7 6.4211 -1.0233 0.0004 21 6 3.5822 -1.2013 -0.0005 22 6 2.1919 -1.2099 -0.0005 23 7 1.4918 -2.4191 -0.0005 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3634 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5141 27 1 3.9655 2.1647 0.0103 28 1 5.7579 2.2585 0.0108 29 1 8.2188 2.3681 0.0013 30 1 10.3959 2.9466 -1.6379 31 1 8.6741 -2.6319 1.0279 32 1 7.9041 -3.0790 -0.5134 33 1 9.4429 -2.1844 -0.5138 34 1 4.1422 -2.1246 -0.0005 35 1 1.9759 -3.2597 -0.0005 36 1 0.5218 -2.4180 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242410538.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:08 Heat of formation + Delta-G solvation = 43.859096 kcal Electronic energy + Delta-G solvation = -19286.989657 eV Core-core repulsion = 16348.644949 eV Total energy + Delta-G solvation = -2938.344709 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.80842 -38.43713 -34.98256 -34.38533 -32.94910 -31.40730 -30.58562 -29.32643 -27.50782 -26.94745 -24.55754 -22.68946 -22.24877 -20.57999 -20.09414 -17.53526 -17.22397 -16.41084 -15.68022 -15.49886 -14.76441 -14.38000 -14.23676 -14.16342 -13.58111 -13.20937 -12.70448 -12.51295 -12.27107 -12.04455 -11.92692 -11.72748 -11.66750 -11.44259 -11.33261 -11.07928 -10.98194 -10.88083 -10.69136 -9.92896 -9.61759 -8.95446 -8.92784 -8.33403 -8.13045 -7.52505 -7.17023 -6.99508 -4.60223 1.46577 2.01858 2.62357 2.88026 2.92358 2.97125 3.13762 3.69683 4.03310 4.25444 4.63793 4.85794 5.18973 5.31014 5.50815 5.63697 5.70405 5.74797 5.81139 5.87999 6.17085 6.24589 6.29666 6.43686 6.50970 6.57895 6.65793 6.77600 6.80631 6.96637 7.09230 7.11458 7.24571 7.58202 7.66454 7.72125 7.83523 7.89557 8.25648 8.45555 8.55167 8.65190 9.51811 9.82756 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.038149 B = 0.004202 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.784230 B = 6662.589643 C = 7310.653300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.012 3.988 3 N -0.445 5.445 4 C 0.031 3.969 5 C 0.017 3.983 6 C -0.004 4.004 7 C -0.120 4.120 8 C -0.143 4.143 9 C 0.075 3.925 10 C -0.428 4.428 11 H 0.090 0.910 12 C 0.071 3.929 13 N -0.773 5.773 14 Si 0.915 3.085 15 H -0.256 1.256 16 H -0.271 1.271 17 H -0.269 1.269 18 C 0.008 3.992 19 C -0.071 4.071 20 N -0.444 5.444 21 C -0.152 4.152 22 C 0.168 3.832 23 N -0.877 5.877 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.150 0.850 28 H 0.104 0.896 29 H 0.127 0.873 30 H 0.287 0.713 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.067 0.933 34 H 0.136 0.864 35 H 0.396 0.604 36 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.516 -3.923 1.524 8.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 N -0.153 5.153 4 C -0.131 4.131 5 C 0.013 3.987 6 C -0.138 4.138 7 C -0.141 4.141 8 C -0.168 4.168 9 C 0.070 3.930 10 C -0.456 4.456 11 H 0.108 0.892 12 C -0.150 4.150 13 N -0.396 5.396 14 Si 0.738 3.262 15 H -0.180 1.180 16 H -0.196 1.196 17 H -0.194 1.194 18 C -0.138 4.138 19 C -0.129 4.129 20 N -0.152 5.152 21 C -0.183 4.183 22 C 0.063 3.937 23 N -0.418 5.418 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.168 0.832 28 H 0.122 0.878 29 H 0.145 0.855 30 H 0.098 0.902 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.153 0.847 35 H 0.224 0.776 36 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -8.400 -3.653 1.364 9.260 hybrid contribution 1.649 0.002 0.028 1.650 sum -6.750 -3.650 1.392 7.799 Atomic orbital electron populations 1.20391 0.90136 1.02081 1.01714 1.20505 0.95968 0.87224 1.09324 1.67149 1.10168 1.27936 1.10025 1.22478 0.88414 0.97834 1.04397 1.19417 0.92688 0.92777 0.93806 1.18565 0.90194 0.89125 1.15928 1.21300 0.95554 0.96524 1.00688 1.21307 0.92220 0.99093 1.04140 1.18441 0.94277 0.91495 0.88768 1.19765 0.91341 1.02270 1.32216 0.89164 1.26120 1.01807 0.94571 0.92511 1.69788 1.39123 1.10237 1.20465 0.86130 0.80774 0.79734 0.79528 1.17970 1.19611 1.19363 1.20994 0.88624 0.94484 1.09737 1.20259 0.98905 0.93333 1.00395 1.66696 1.08478 1.30628 1.09419 1.21071 0.90981 0.99169 1.07051 1.18496 0.91907 0.87185 0.96106 1.42390 1.08523 1.04899 1.86021 0.91792 0.91075 0.92290 0.83242 0.87818 0.85497 0.90151 0.93296 0.93193 0.91434 0.84662 0.77612 0.77645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.03 9.73 36.01 0.35 -0.68 16 2 C 0.01 0.20 6.80 -82.27 -0.56 -0.36 16 3 N -0.44 -8.31 10.25 -8.96 -0.09 -8.40 16 4 C 0.03 0.60 10.59 -17.10 -0.18 0.41 16 5 C 0.02 0.35 5.89 -104.77 -0.62 -0.27 16 6 C 0.00 -0.09 6.74 -82.75 -0.56 -0.65 16 7 C -0.12 -2.78 9.39 -39.55 -0.37 -3.16 16 8 C -0.14 -3.54 8.73 -39.00 -0.34 -3.88 16 9 C 0.08 1.89 5.58 -106.64 -0.59 1.30 16 10 C -0.43 -10.27 8.14 -37.85 -0.31 -10.58 16 11 H 0.09 2.04 6.87 -52.49 -0.36 1.68 16 12 C 0.07 1.62 5.19 -17.32 -0.09 1.53 16 13 N -0.77 -18.32 10.95 55.55 0.61 -17.71 16 14 Si 0.91 16.89 29.59 -169.99 -5.03 11.86 16 15 H -0.26 -4.67 7.11 56.52 0.40 -4.27 16 16 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 17 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 18 C 0.01 0.19 6.86 -81.81 -0.56 -0.37 16 19 C -0.07 -1.44 9.58 36.01 0.34 -1.09 16 20 N -0.44 -10.72 9.38 -5.39 -0.05 -10.77 16 21 C -0.15 -2.88 9.56 -38.68 -0.37 -3.25 16 22 C 0.17 2.73 6.75 -83.67 -0.56 2.16 16 23 N -0.88 -10.21 8.99 32.47 0.29 -9.92 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.06 0.57 6.52 -51.93 -0.34 0.23 16 27 H 0.15 2.72 6.16 -52.49 -0.32 2.39 16 28 H 0.10 2.11 6.17 -52.49 -0.32 1.79 16 29 H 0.13 3.16 6.26 -52.49 -0.33 2.83 16 30 H 0.29 6.12 8.30 -40.82 -0.34 5.78 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.07 1.32 6.76 -51.93 -0.35 0.97 16 34 H 0.14 2.56 7.61 -52.49 -0.40 2.16 16 35 H 0.40 4.03 8.85 -40.82 -0.36 3.67 16 36 H 0.39 3.61 6.82 -40.82 -0.28 3.33 16 LS Contribution 302.90 15.07 4.56 4.56 Total: -1.00 -28.04 302.90 -8.02 -36.06 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -3.89 Total: 13.20 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: -4.42 Total: -18.89 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: 0.76 Total: -46.80 kcal Atomic # 14 Polarization: 16.89 SS G_CDS: -5.03 Total: 11.86 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.04 -8.02 -36.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242410538.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.922 kcal (2) G-P(sol) polarization free energy of solvation -28.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds