Wall clock time and date at job start Mon Mar 30 2020 01:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31893 * 119.50685 * 2 1 4 4 C 1.31660 * 121.95192 * 179.70283 * 3 2 1 5 5 C 1.39649 * 120.72470 * 0.58524 * 4 3 2 6 6 C 1.47976 * 120.52541 * 179.72784 * 5 4 3 7 7 C 1.39895 * 119.44712 * 359.97205 * 6 5 4 8 8 C 1.36612 * 119.46469 * 180.27844 * 7 6 5 9 9 C 1.41304 * 118.41331 * 359.48097 * 8 7 6 10 10 C 1.41055 * 120.55234 * 180.27753 * 9 8 7 11 11 H 1.07995 * 119.99742 * 154.68030 * 10 9 8 12 12 C 1.40024 * 120.00200 * 334.67809 * 10 9 8 13 13 N 1.30796 * 120.00057 * 343.67729 * 12 10 9 14 14 Si 1.86800 * 120.00167 * 163.67357 * 12 10 9 15 15 H 1.48495 * 109.47036 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47112 * 120.00113 * 14 12 10 17 17 H 1.48499 * 109.46974 * 240.00057 * 14 12 10 18 18 C 1.40943 * 118.88997 * 0.25459 * 9 8 7 19 19 C 1.50706 * 119.79898 * 179.97438 * 18 9 8 20 20 N 1.31263 * 120.40295 * 0.02562 * 18 9 8 21 21 C 1.39869 * 118.95396 * 359.45414 * 5 4 3 22 22 C 1.39026 * 119.51295 * 180.02562 * 2 1 3 23 23 N 1.39729 * 120.41995 * 359.97304 * 22 2 1 24 24 H 1.09000 * 109.46914 * 269.97962 * 1 2 3 25 25 H 1.09005 * 109.47540 * 29.97551 * 1 2 3 26 26 H 1.09000 * 109.46964 * 149.98080 * 1 2 3 27 27 H 1.08002 * 119.63836 * 180.29144 * 4 3 2 28 28 H 1.07996 * 120.26637 * 0.03063 * 7 6 5 29 29 H 1.07999 * 120.79154 * 179.75943 * 8 7 6 30 30 H 0.97000 * 120.00022 * 179.97438 * 13 12 10 31 31 H 1.08998 * 109.46586 * 89.99830 * 19 18 9 32 32 H 1.08999 * 109.47405 * 210.00127 * 19 18 9 33 33 H 1.08997 * 109.47038 * 330.00044 * 19 18 9 34 34 H 1.07997 * 120.88678 * 180.27137 * 21 5 4 35 35 H 0.96997 * 119.99513 * 180.02562 * 23 22 2 36 36 H 0.97001 * 120.00051 * 0.02788 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1566 1.1479 0.0000 4 6 3.4720 1.2040 0.0058 5 6 4.2361 0.0351 0.0000 6 6 5.7143 0.1035 0.0005 7 6 6.3450 1.3521 0.0062 8 6 7.7097 1.4156 0.0009 9 6 8.4391 0.2054 0.0009 10 6 9.8496 0.2184 0.0014 11 1 10.3971 -0.6221 0.4014 12 6 10.5398 1.3210 -0.5167 13 7 9.9178 2.1826 -1.2793 14 14 12.3491 1.5615 -0.1189 15 1 12.8146 0.4560 0.7564 16 1 13.1370 1.5610 -1.3777 17 1 12.5340 2.8585 0.5802 18 6 7.7337 -1.0148 0.0009 19 6 8.4911 -2.3177 0.0003 20 7 6.4211 -1.0233 0.0004 21 6 3.5822 -1.2013 -0.0005 22 6 2.1919 -1.2099 -0.0005 23 7 1.4918 -2.4191 -0.0005 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3634 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5141 27 1 3.9655 2.1647 0.0103 28 1 5.7579 2.2585 0.0108 29 1 8.2188 2.3681 0.0013 30 1 10.3959 2.9466 -1.6379 31 1 8.6741 -2.6319 1.0279 32 1 7.9041 -3.0790 -0.5134 33 1 9.4429 -2.1844 -0.5138 34 1 4.1422 -2.1246 -0.0005 35 1 1.9759 -3.2597 -0.0005 36 1 0.5218 -2.4180 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242410538.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:08 Heat of formation + Delta-G solvation = 26.773305 kcal Electronic energy + Delta-G solvation = -19287.730553 eV Core-core repulsion = 16348.644949 eV Total energy + Delta-G solvation = -2939.085604 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.25869 -40.14789 -36.39544 -35.94554 -34.49222 -33.09159 -32.20912 -30.61172 -28.96320 -28.61296 -26.15416 -24.13685 -23.83998 -22.23116 -21.71373 -19.30503 -18.51823 -17.81149 -17.26504 -16.93070 -16.37842 -15.84988 -15.64733 -15.53242 -15.16074 -14.88524 -14.32811 -13.89702 -13.55196 -13.49557 -13.44676 -13.35544 -13.03211 -12.91966 -12.83693 -12.65853 -12.54005 -12.20839 -12.14353 -11.64597 -11.29279 -10.51485 -10.39852 -10.15112 -9.95680 -9.15984 -8.76310 -8.43686 -6.41472 -0.06512 0.58955 0.94665 1.13653 1.40255 1.55085 1.57023 2.15714 2.62361 2.93842 3.07703 3.54619 3.70699 3.76671 3.93880 4.14511 4.27131 4.46795 4.54195 4.65093 4.74431 4.79750 4.84765 4.89937 4.98551 5.01267 5.11199 5.17718 5.23448 5.25744 5.49279 5.56750 5.69968 5.86287 5.95066 6.00863 6.45180 6.47611 6.67413 6.75107 6.98799 7.23124 7.69253 8.15650 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.038149 B = 0.004202 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.784230 B = 6662.589643 C = 7310.653300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.015 3.985 3 N -0.457 5.457 4 C 0.018 3.982 5 C -0.011 4.011 6 C -0.011 4.011 7 C -0.129 4.129 8 C -0.164 4.164 9 C 0.046 3.954 10 C -0.452 4.452 11 H 0.098 0.902 12 C 0.033 3.967 13 N -0.807 5.807 14 Si 0.989 3.011 15 H -0.251 1.251 16 H -0.265 1.265 17 H -0.265 1.265 18 C -0.014 4.014 19 C -0.064 4.064 20 N -0.455 5.455 21 C -0.164 4.164 22 C 0.178 3.822 23 N -0.854 5.854 24 H 0.082 0.918 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.152 0.848 28 H 0.123 0.877 29 H 0.117 0.883 30 H 0.295 0.705 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.130 0.870 35 H 0.406 0.594 36 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.923 -5.004 1.771 10.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 N -0.165 5.165 4 C -0.142 4.142 5 C -0.015 4.015 6 C -0.146 4.146 7 C -0.149 4.149 8 C -0.189 4.189 9 C 0.041 3.959 10 C -0.480 4.480 11 H 0.116 0.884 12 C -0.185 4.185 13 N -0.431 5.431 14 Si 0.809 3.191 15 H -0.174 1.174 16 H -0.190 1.190 17 H -0.190 1.190 18 C -0.160 4.160 19 C -0.121 4.121 20 N -0.164 5.164 21 C -0.195 4.195 22 C 0.070 3.930 23 N -0.397 5.397 24 H 0.100 0.900 25 H 0.092 0.908 26 H 0.107 0.893 27 H 0.169 0.831 28 H 0.141 0.859 29 H 0.135 0.865 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.148 0.852 35 H 0.236 0.764 36 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -9.835 -4.771 1.610 11.049 hybrid contribution 1.777 0.268 -0.062 1.798 sum -8.058 -4.504 1.548 9.360 Atomic orbital electron populations 1.20549 0.86567 1.03775 1.03364 1.21337 0.98252 0.86647 1.06704 1.67233 1.09566 1.29163 1.10561 1.22482 0.88974 0.97593 1.05180 1.19400 0.91442 0.94239 0.96397 1.19050 0.91755 0.89011 1.14795 1.21529 0.95287 0.97609 1.00444 1.21347 0.92996 0.98889 1.05649 1.18795 0.95315 0.92023 0.89793 1.20017 0.91211 1.03540 1.33241 0.88413 1.26989 1.06162 0.93690 0.91631 1.69834 1.41148 1.10899 1.21182 0.85032 0.75000 0.79683 0.79391 1.17368 1.18952 1.18974 1.21601 0.89028 0.95781 1.09563 1.20248 0.98602 0.91798 1.01477 1.66786 1.08567 1.30954 1.10097 1.21096 0.92411 0.98262 1.07701 1.18474 0.91006 0.88827 0.94684 1.42324 1.09413 1.03808 1.84141 0.89986 0.90781 0.89320 0.83061 0.85897 0.86496 0.89355 0.91845 0.92112 0.91204 0.85180 0.76400 0.75650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.71 9.73 71.24 0.69 -1.02 16 2 C 0.01 0.45 6.80 42.74 0.29 0.74 16 3 N -0.46 -16.53 10.25 -182.25 -1.87 -18.39 16 4 C 0.02 0.71 10.59 85.06 0.90 1.61 16 5 C -0.01 -0.48 5.89 -19.96 -0.12 -0.59 16 6 C -0.01 -0.55 6.74 41.95 0.28 -0.27 16 7 C -0.13 -6.22 9.39 22.29 0.21 -6.01 16 8 C -0.16 -8.52 8.73 22.64 0.20 -8.33 16 9 C 0.05 2.38 5.58 -21.17 -0.12 2.26 16 10 C -0.45 -22.26 8.14 23.39 0.19 -22.07 16 11 H 0.10 4.48 6.87 -2.91 -0.02 4.46 16 12 C 0.03 1.54 5.19 85.28 0.44 1.98 16 13 N -0.81 -39.30 10.95 21.84 0.24 -39.06 16 14 Si 0.99 34.58 29.59 68.60 2.03 36.61 16 15 H -0.25 -8.44 7.11 99.48 0.71 -7.73 16 16 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 17 H -0.27 -9.03 7.11 99.48 0.71 -8.33 16 18 C -0.01 -0.70 6.86 43.31 0.30 -0.40 16 19 C -0.06 -2.58 9.58 71.24 0.68 -1.90 16 20 N -0.46 -22.58 9.38 -170.97 -1.60 -24.18 16 21 C -0.16 -6.11 9.56 22.86 0.22 -5.89 16 22 C 0.18 5.34 6.75 38.26 0.26 5.60 16 23 N -0.85 -16.78 8.99 -51.19 -0.46 -17.24 16 24 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 26 H 0.09 1.25 6.52 -2.39 -0.02 1.24 16 27 H 0.15 5.65 6.16 -2.91 -0.02 5.63 16 28 H 0.12 5.23 6.17 -2.91 -0.02 5.21 16 29 H 0.12 6.17 6.26 -2.91 -0.02 6.15 16 30 H 0.30 12.85 8.30 -92.71 -0.77 12.08 16 31 H 0.06 2.33 8.14 -2.39 -0.02 2.32 16 32 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.07 2.74 6.76 -2.39 -0.02 2.73 16 34 H 0.13 4.91 7.61 -2.91 -0.02 4.88 16 35 H 0.41 6.90 8.85 -92.71 -0.82 6.08 16 36 H 0.41 5.58 6.82 -92.71 -0.63 4.95 16 Total: -1.00 -62.40 302.90 2.46 -59.95 By element: Atomic # 1 Polarization: 36.90 SS G_CDS: -0.31 Total: 36.59 kcal Atomic # 6 Polarization: -38.70 SS G_CDS: 4.43 Total: -34.27 kcal Atomic # 7 Polarization: -95.18 SS G_CDS: -3.69 Total: -98.87 kcal Atomic # 14 Polarization: 34.58 SS G_CDS: 2.03 Total: 36.61 kcal Total: -62.40 2.46 -59.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242410538.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.719 kcal (2) G-P(sol) polarization free energy of solvation -62.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds