Wall clock time and date at job start Mon Mar 30 2020 00:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42905 * 109.46736 * 2 1 4 4 C 1.35921 * 117.00083 * 180.02562 * 3 2 1 5 5 C 1.38905 * 120.39512 * 0.02562 * 4 3 2 6 6 N 1.31886 * 121.01001 * 179.97438 * 5 4 3 7 7 C 1.31683 * 121.93501 * 359.97438 * 6 5 4 8 8 C 1.39637 * 120.67622 * 359.97438 * 7 6 5 9 9 C 1.47894 * 120.53209 * 180.02562 * 8 7 6 10 10 C 1.39150 * 120.33028 * 130.00243 * 9 8 7 11 11 C 1.38099 * 119.98280 * 179.72701 * 10 9 8 12 12 C 1.38922 * 120.67106 * 0.02562 * 11 10 9 13 13 C 1.36439 * 120.68688 * 359.97438 * 12 11 10 14 14 C 1.40754 * 119.98311 * 359.97438 * 13 12 11 15 15 C 1.40886 * 120.32694 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00150 * 152.99417 * 15 14 13 17 17 C 1.40077 * 119.99661 * 332.99087 * 15 14 13 18 18 N 1.30771 * 120.00419 * 344.46230 * 17 15 14 19 19 Si 1.86806 * 119.99531 * 164.46122 * 17 15 14 20 20 H 1.48491 * 109.47036 * 90.00127 * 19 17 15 21 21 H 1.48505 * 109.46956 * 210.00410 * 19 17 15 22 22 H 1.48502 * 109.46924 * 329.99946 * 19 17 15 23 23 C 1.38791 * 120.40094 * 180.24122 * 4 3 2 24 24 H 1.09007 * 109.47249 * 299.99291 * 1 2 3 25 25 H 1.09000 * 109.47601 * 59.99719 * 1 2 3 26 26 H 1.09007 * 109.46909 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46999 * 240.00833 * 2 1 3 28 28 H 1.08998 * 109.47215 * 119.99909 * 2 1 3 29 29 H 1.07999 * 119.49443 * 359.95801 * 5 4 3 30 30 H 1.07999 * 119.65450 * 180.02562 * 7 6 5 31 31 H 1.07999 * 120.00969 * 359.75170 * 10 9 8 32 32 H 1.07993 * 119.66449 * 179.97438 * 11 10 9 33 33 H 1.08000 * 119.65527 * 179.97438 * 12 11 10 34 34 H 1.08000 * 120.00932 * 179.97438 * 13 12 11 35 35 H 0.96994 * 119.99477 * 179.97438 * 18 17 15 36 36 H 1.07999 * 120.87913 * 0.04109 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3537 1.5256 -0.0005 5 6 4.2075 0.4299 -0.0016 6 7 5.5168 0.5888 -0.0026 7 6 6.0736 1.7821 -0.0032 8 6 5.2866 2.9355 -0.0033 9 6 5.9154 4.2741 -0.0045 10 6 5.5147 5.2379 -0.9248 11 6 6.1027 6.4874 -0.9159 12 6 7.0956 6.7967 0.0052 13 6 7.5095 5.8726 0.9197 14 6 6.9286 4.5906 0.9365 15 6 7.3500 3.6310 1.8780 16 1 6.6719 2.8534 2.1971 17 6 8.6487 3.6855 2.4002 18 7 9.5601 4.4156 1.8117 19 14 9.0785 2.7151 3.9375 20 1 9.5572 1.3634 3.5519 21 1 10.1469 3.4235 4.6873 22 1 7.8731 2.5874 4.7954 23 6 3.8931 2.8044 0.0045 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 3.7929 -0.5673 -0.0013 30 1 7.1501 1.8694 -0.0045 31 1 4.7437 5.0089 -1.6456 32 1 5.7880 7.2313 -1.6327 33 1 7.5447 7.7789 -0.0028 34 1 8.2826 6.1247 1.6304 35 1 10.4591 4.4535 2.1736 36 1 3.2544 3.6753 0.0095 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242657650.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:31 Heat of formation + Delta-G solvation = 3.088288 kcal Electronic energy + Delta-G solvation = -19537.115245 eV Core-core repulsion = 16564.709830 eV Total energy + Delta-G solvation = -2972.405415 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.08336 -38.19763 -37.13958 -33.82362 -32.54163 -31.95263 -30.01415 -29.36846 -28.21805 -25.48727 -24.10270 -22.75307 -22.09835 -20.85169 -19.90572 -17.76278 -17.24704 -16.14701 -16.05221 -16.02841 -15.37378 -14.73941 -14.01010 -13.78203 -13.66942 -13.19594 -12.76302 -12.71863 -12.59927 -12.35029 -12.28148 -11.77393 -11.63744 -11.42225 -11.23036 -11.13785 -10.88253 -10.82930 -10.53590 -9.82222 -9.67286 -9.30391 -8.98362 -8.77721 -7.97127 -7.50739 -7.31786 -6.88104 -4.48346 1.63095 1.92965 2.72161 2.93593 3.02799 3.07611 3.17572 3.35030 3.85809 4.45535 4.53635 4.85710 4.89427 5.01244 5.18462 5.27794 5.44559 5.54662 5.60630 5.68778 5.76583 5.89315 6.03965 6.11176 6.24294 6.36221 6.50800 6.62658 6.85876 6.98838 7.09782 7.19395 7.25200 7.45319 7.64487 7.77752 7.90088 7.98832 8.13585 8.47805 8.62377 8.72446 8.81612 10.03072 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.017482 B = 0.006013 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.257474 B = 4655.780237 C = 5859.036321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 O -0.317 6.317 4 C 0.072 3.928 5 C -0.019 4.019 6 N -0.457 5.457 7 C 0.082 3.918 8 C 0.016 3.984 9 C -0.194 4.194 10 C -0.066 4.066 11 C -0.242 4.242 12 C -0.098 4.098 13 C -0.156 4.156 14 C 0.135 3.865 15 C -0.450 4.450 16 H 0.082 0.918 17 C 0.079 3.921 18 N -0.784 5.784 19 Si 0.905 3.095 20 H -0.266 1.266 21 H -0.275 1.275 22 H -0.260 1.260 23 C -0.127 4.127 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.144 0.856 30 H 0.165 0.835 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.119 0.881 35 H 0.284 0.716 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.069 -5.330 -1.319 10.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.230 6.230 4 C 0.026 3.974 5 C -0.175 4.175 6 N -0.166 5.166 7 C -0.078 4.078 8 C 0.014 3.986 9 C -0.196 4.196 10 C -0.084 4.084 11 C -0.262 4.262 12 C -0.117 4.117 13 C -0.175 4.175 14 C 0.132 3.868 15 C -0.479 4.479 16 H 0.100 0.900 17 C -0.141 4.141 18 N -0.408 5.408 19 Si 0.729 3.271 20 H -0.191 1.191 21 H -0.200 1.200 22 H -0.184 1.184 23 C -0.153 4.153 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.161 0.839 30 H 0.182 0.818 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.137 0.863 35 H 0.095 0.905 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.466 -5.890 -1.302 10.395 hybrid contribution -0.174 0.151 0.660 0.699 sum -8.640 -5.739 -0.641 10.392 Atomic orbital electron populations 1.21761 0.93035 1.02548 1.03417 1.22716 0.95608 0.82548 1.01334 1.86035 1.19106 1.28657 1.89244 1.19882 0.82730 0.95265 0.99564 1.22610 0.89914 0.97297 1.07681 1.67445 1.11536 1.27230 1.10385 1.23059 1.01085 0.85994 0.97632 1.19653 0.91072 0.95207 0.92644 1.18403 1.06957 0.91694 1.02561 1.20562 0.97740 0.93083 0.96996 1.20287 1.04229 0.97077 1.04572 1.20509 0.96917 0.97917 0.96320 1.21054 1.02767 0.92884 1.00816 1.17494 0.88178 0.91951 0.89169 1.19589 0.97232 1.11232 1.19849 0.90022 1.25939 0.96085 0.94773 0.97292 1.69777 1.03439 1.31988 1.35638 0.86331 0.79171 0.80169 0.81402 1.19081 1.19951 1.18382 1.21055 0.94759 0.94676 1.04813 0.91594 0.91640 0.90601 0.92191 0.92147 0.83910 0.81831 0.89126 0.89254 0.89313 0.86275 0.90517 0.84922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.28 37.16 0.38 -0.93 16 2 C 0.05 0.60 5.47 37.16 0.20 0.81 16 3 O -0.32 -4.98 10.15 -19.49 -0.20 -5.17 16 4 C 0.07 1.30 6.70 -39.13 -0.26 1.03 16 5 C -0.02 -0.33 10.22 -17.28 -0.18 -0.51 16 6 N -0.46 -9.31 10.34 -12.75 -0.13 -9.44 16 7 C 0.08 1.77 9.20 -17.09 -0.16 1.61 16 8 C 0.02 0.35 4.93 -104.77 -0.52 -0.16 16 9 C -0.19 -4.55 5.54 -104.22 -0.58 -5.12 16 10 C -0.07 -1.44 9.54 -39.29 -0.37 -1.81 16 11 C -0.24 -5.25 10.03 -39.38 -0.40 -5.64 16 12 C -0.10 -2.21 9.96 -39.98 -0.40 -2.61 16 13 C -0.16 -3.86 8.62 -39.28 -0.34 -4.20 16 14 C 0.13 3.40 5.55 -106.56 -0.59 2.81 16 15 C -0.45 -11.28 7.14 -37.89 -0.27 -11.55 16 16 H 0.08 2.06 6.65 -52.49 -0.35 1.71 16 17 C 0.08 1.87 5.17 -17.31 -0.09 1.79 16 18 N -0.78 -19.13 10.99 55.55 0.61 -18.52 16 19 Si 0.91 18.26 29.59 -169.99 -5.03 13.23 16 20 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 21 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 22 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 23 C -0.13 -2.50 9.65 -38.73 -0.37 -2.87 16 24 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 27 H 0.06 0.62 7.67 -51.93 -0.40 0.22 16 28 H 0.06 0.64 7.68 -51.93 -0.40 0.24 16 29 H 0.14 2.07 6.30 -52.49 -0.33 1.74 16 30 H 0.16 3.69 7.33 -52.49 -0.38 3.31 16 31 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 32 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 33 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 34 H 0.12 3.01 6.26 -52.49 -0.33 2.69 16 35 H 0.28 6.31 8.29 -40.82 -0.34 5.97 16 36 H 0.13 2.47 8.06 -52.49 -0.42 2.05 16 LS Contribution 307.20 15.07 4.63 4.63 Total: -1.00 -26.82 307.20 -8.34 -35.16 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -4.28 Total: 7.46 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: -3.94 Total: -27.36 kcal Atomic # 7 Polarization: -28.44 SS G_CDS: 0.48 Total: -27.96 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: -0.20 Total: -5.17 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -26.82 -8.34 -35.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242657650.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.251 kcal (2) G-P(sol) polarization free energy of solvation -26.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds