Wall clock time and date at job start Mon Mar 30 2020 00:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42905 * 109.46736 * 2 1 4 4 C 1.35921 * 117.00083 * 180.02562 * 3 2 1 5 5 C 1.38905 * 120.39512 * 0.02562 * 4 3 2 6 6 N 1.31886 * 121.01001 * 179.97438 * 5 4 3 7 7 C 1.31683 * 121.93501 * 359.97438 * 6 5 4 8 8 C 1.39637 * 120.67622 * 359.97438 * 7 6 5 9 9 C 1.47894 * 120.53209 * 180.02562 * 8 7 6 10 10 C 1.39150 * 120.33028 * 130.00243 * 9 8 7 11 11 C 1.38099 * 119.98280 * 179.72701 * 10 9 8 12 12 C 1.38922 * 120.67106 * 0.02562 * 11 10 9 13 13 C 1.36439 * 120.68688 * 359.97438 * 12 11 10 14 14 C 1.40754 * 119.98311 * 359.97438 * 13 12 11 15 15 C 1.40886 * 120.32694 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00150 * 152.99417 * 15 14 13 17 17 C 1.40077 * 119.99661 * 332.99087 * 15 14 13 18 18 N 1.30771 * 120.00419 * 344.46230 * 17 15 14 19 19 Si 1.86806 * 119.99531 * 164.46122 * 17 15 14 20 20 H 1.48491 * 109.47036 * 90.00127 * 19 17 15 21 21 H 1.48505 * 109.46956 * 210.00410 * 19 17 15 22 22 H 1.48502 * 109.46924 * 329.99946 * 19 17 15 23 23 C 1.38791 * 120.40094 * 180.24122 * 4 3 2 24 24 H 1.09007 * 109.47249 * 299.99291 * 1 2 3 25 25 H 1.09000 * 109.47601 * 59.99719 * 1 2 3 26 26 H 1.09007 * 109.46909 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46999 * 240.00833 * 2 1 3 28 28 H 1.08998 * 109.47215 * 119.99909 * 2 1 3 29 29 H 1.07999 * 119.49443 * 359.95801 * 5 4 3 30 30 H 1.07999 * 119.65450 * 180.02562 * 7 6 5 31 31 H 1.07999 * 120.00969 * 359.75170 * 10 9 8 32 32 H 1.07993 * 119.66449 * 179.97438 * 11 10 9 33 33 H 1.08000 * 119.65527 * 179.97438 * 12 11 10 34 34 H 1.08000 * 120.00932 * 179.97438 * 13 12 11 35 35 H 0.96994 * 119.99477 * 179.97438 * 18 17 15 36 36 H 1.07999 * 120.87913 * 0.04109 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3537 1.5256 -0.0005 5 6 4.2075 0.4299 -0.0016 6 7 5.5168 0.5888 -0.0026 7 6 6.0736 1.7821 -0.0032 8 6 5.2866 2.9355 -0.0033 9 6 5.9154 4.2741 -0.0045 10 6 5.5147 5.2379 -0.9248 11 6 6.1027 6.4874 -0.9159 12 6 7.0956 6.7967 0.0052 13 6 7.5095 5.8726 0.9197 14 6 6.9286 4.5906 0.9365 15 6 7.3500 3.6310 1.8780 16 1 6.6719 2.8534 2.1971 17 6 8.6487 3.6855 2.4002 18 7 9.5601 4.4156 1.8117 19 14 9.0785 2.7151 3.9375 20 1 9.5572 1.3634 3.5519 21 1 10.1469 3.4235 4.6873 22 1 7.8731 2.5874 4.7954 23 6 3.8931 2.8044 0.0045 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 3.7929 -0.5673 -0.0013 30 1 7.1501 1.8694 -0.0045 31 1 4.7437 5.0089 -1.6456 32 1 5.7880 7.2313 -1.6327 33 1 7.5447 7.7789 -0.0028 34 1 8.2826 6.1247 1.6304 35 1 10.4591 4.4535 2.1736 36 1 3.2544 3.6753 0.0095 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242657650.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:31 Heat of formation + Delta-G solvation = -10.091229 kcal Electronic energy + Delta-G solvation = -19537.686752 eV Core-core repulsion = 16564.709830 eV Total energy + Delta-G solvation = -2972.976922 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.52928 -39.71130 -38.70165 -35.61142 -34.10251 -33.06993 -31.62798 -30.87367 -29.86490 -27.27171 -25.37842 -24.23950 -23.42040 -22.61517 -21.49248 -19.34529 -18.82743 -17.60115 -17.59389 -17.12588 -17.04532 -16.38785 -15.67691 -15.36300 -14.95751 -14.58925 -14.42638 -14.12534 -13.95474 -13.57132 -13.49848 -13.42390 -13.08910 -13.03563 -12.82522 -12.57780 -12.37343 -12.17853 -11.80151 -11.56780 -11.43066 -11.08451 -10.58535 -10.33592 -9.47494 -9.31420 -9.03540 -8.65147 -6.34042 0.06173 0.38363 0.99581 1.17242 1.36753 1.46548 1.52121 2.17558 2.18343 2.72609 2.90292 3.59617 3.70213 3.76430 4.01250 4.08194 4.17474 4.22540 4.39442 4.41859 4.45361 4.57028 4.68919 4.88382 4.94721 4.96896 4.99232 5.10738 5.25994 5.27825 5.33790 5.48753 5.63341 5.67718 6.01125 6.07858 6.18070 6.32098 6.35287 6.65368 6.89474 6.98543 7.07815 8.28233 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.017482 B = 0.006013 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.257474 B = 4655.780237 C = 5859.036321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.038 3.962 3 O -0.324 6.324 4 C 0.085 3.915 5 C -0.010 4.010 6 N -0.468 5.468 7 C 0.065 3.935 8 C -0.002 4.002 9 C -0.201 4.201 10 C -0.073 4.073 11 C -0.239 4.239 12 C -0.102 4.102 13 C -0.182 4.182 14 C 0.106 3.894 15 C -0.474 4.474 16 H 0.070 0.930 17 C 0.044 3.956 18 N -0.814 5.814 19 Si 0.967 3.033 20 H -0.264 1.264 21 H -0.262 1.262 22 H -0.265 1.265 23 C -0.132 4.132 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.104 0.896 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.182 0.818 30 H 0.142 0.858 31 H 0.114 0.886 32 H 0.121 0.879 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.290 0.710 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.024 -6.474 -1.657 12.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.036 4.036 3 O -0.237 6.237 4 C 0.037 3.963 5 C -0.167 4.167 6 N -0.177 5.177 7 C -0.093 4.093 8 C -0.004 4.004 9 C -0.203 4.203 10 C -0.091 4.091 11 C -0.258 4.258 12 C -0.121 4.121 13 C -0.201 4.201 14 C 0.104 3.896 15 C -0.503 4.503 16 H 0.088 0.912 17 C -0.172 4.172 18 N -0.439 5.439 19 Si 0.789 3.211 20 H -0.189 1.189 21 H -0.186 1.186 22 H -0.189 1.189 23 C -0.158 4.158 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.122 0.878 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.199 0.801 30 H 0.159 0.841 31 H 0.132 0.868 32 H 0.139 0.861 33 H 0.130 0.870 34 H 0.122 0.878 35 H 0.101 0.899 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -10.421 -7.020 -1.650 12.673 hybrid contribution 0.207 0.430 0.652 0.808 sum -10.214 -6.590 -0.998 12.197 Atomic orbital electron populations 1.21801 0.90975 1.04354 1.03212 1.23178 0.97295 0.80522 1.02591 1.86060 1.17326 1.31729 1.88581 1.19820 0.84043 0.94511 0.97900 1.23202 0.88924 0.99060 1.05531 1.67437 1.13011 1.26490 1.10772 1.22720 1.00271 0.86782 0.99488 1.19571 0.92070 0.94378 0.94373 1.18708 1.06414 0.92947 1.02208 1.20883 0.98238 0.93023 0.96989 1.20674 1.03167 0.97615 1.04366 1.20802 0.96982 0.98529 0.95746 1.21050 1.03521 0.93621 1.01947 1.17810 0.89333 0.92381 0.90080 1.19600 0.97890 1.11573 1.21245 0.91228 1.26591 0.95563 0.95581 0.99494 1.69812 1.03918 1.33293 1.36864 0.85414 0.78825 0.78914 0.77988 1.18859 1.18574 1.18883 1.21127 0.93954 0.96061 1.04685 0.91956 0.91731 0.87770 0.90680 0.91034 0.80119 0.84055 0.86807 0.86109 0.86961 0.87787 0.89868 0.84179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 10.28 71.98 0.74 -1.30 16 2 C 0.04 0.73 5.47 71.98 0.39 1.12 16 3 O -0.32 -9.26 10.15 -92.66 -0.94 -10.20 16 4 C 0.08 2.87 6.70 22.56 0.15 3.02 16 5 C -0.01 -0.32 10.22 84.84 0.87 0.54 16 6 N -0.47 -18.82 10.34 -194.26 -2.01 -20.83 16 7 C 0.07 2.90 9.20 85.05 0.78 3.69 16 8 C 0.00 -0.08 4.93 -19.96 -0.10 -0.18 16 9 C -0.20 -9.60 5.54 -19.61 -0.11 -9.71 16 10 C -0.07 -3.17 9.54 22.46 0.21 -2.95 16 11 C -0.24 -10.03 10.03 22.40 0.22 -9.81 16 12 C -0.10 -4.59 9.96 22.01 0.22 -4.37 16 13 C -0.18 -9.30 8.62 22.46 0.19 -9.11 16 14 C 0.11 5.58 5.55 -21.12 -0.12 5.46 16 15 C -0.47 -24.86 7.14 23.36 0.17 -24.69 16 16 H 0.07 3.69 6.65 -2.91 -0.02 3.67 16 17 C 0.04 2.19 5.17 85.30 0.44 2.63 16 18 N -0.81 -41.17 10.99 21.85 0.24 -40.93 16 19 Si 0.97 38.39 29.59 68.60 2.03 40.42 16 20 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 21 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 22 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 23 C -0.13 -5.10 9.65 22.82 0.22 -4.88 16 24 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 25 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 27 H 0.07 1.23 7.67 -2.39 -0.02 1.22 16 28 H 0.07 1.23 7.68 -2.39 -0.02 1.21 16 29 H 0.18 4.53 6.30 -2.91 -0.02 4.51 16 30 H 0.14 6.80 7.33 -2.91 -0.02 6.78 16 31 H 0.11 4.31 8.06 -2.91 -0.02 4.29 16 32 H 0.12 4.26 8.06 -2.91 -0.02 4.24 16 33 H 0.11 4.39 8.06 -2.91 -0.02 4.36 16 34 H 0.10 5.52 6.26 -2.91 -0.02 5.50 16 35 H 0.29 13.30 8.29 -92.71 -0.77 12.53 16 36 H 0.14 5.09 8.06 -2.91 -0.02 5.06 16 Total: -1.00 -59.18 307.20 4.70 -54.48 By element: Atomic # 1 Polarization: 26.50 SS G_CDS: 1.09 Total: 27.59 kcal Atomic # 6 Polarization: -54.82 SS G_CDS: 4.29 Total: -50.54 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: -1.77 Total: -61.76 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: -0.94 Total: -10.20 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 2.03 Total: 40.42 kcal Total: -59.18 4.70 -54.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242657650.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.390 kcal (2) G-P(sol) polarization free energy of solvation -59.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds