Wall clock time and date at job start Mon Mar 30 2020 00:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99687 * 2 1 4 4 C 1.50700 * 109.46845 * 179.97438 * 3 2 1 5 5 C 1.38376 * 120.34772 * 269.72864 * 4 3 2 6 6 N 1.31932 * 121.08515 * 179.72173 * 5 4 3 7 7 C 1.31694 * 121.87084 * 0.54693 * 6 5 4 8 8 C 1.39571 * 120.56506 * 359.74094 * 7 6 5 9 9 C 1.47991 * 120.56399 * 179.97438 * 8 7 6 10 10 C 1.39933 * 119.88393 * 179.74744 * 9 8 7 11 11 C 1.36255 * 120.12325 * 179.75902 * 10 9 8 12 12 C 1.40928 * 119.87241 * 0.51619 * 11 10 9 13 13 C 1.41027 * 120.11544 * 179.71820 * 12 11 10 14 14 H 1.08007 * 120.00242 * 204.68833 * 13 12 11 15 15 C 1.40012 * 120.00331 * 24.68282 * 13 12 11 16 16 N 1.30794 * 119.99646 * 17.95131 * 15 13 12 17 17 Si 1.86805 * 120.00470 * 197.95084 * 15 13 12 18 18 H 1.48502 * 109.47053 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47324 * 119.99947 * 17 15 13 20 20 H 1.48496 * 109.46785 * 240.00056 * 17 15 13 21 21 C 1.40934 * 119.77050 * 359.74015 * 12 11 10 22 22 C 1.36254 * 119.87093 * 359.97438 * 21 12 11 23 23 C 1.38334 * 120.34336 * 90.00064 * 4 3 2 24 24 H 1.09005 * 109.47105 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47353 * 299.99294 * 1 2 3 26 26 H 1.09002 * 109.47300 * 60.00246 * 1 2 3 27 27 H 1.08996 * 109.46749 * 60.00280 * 3 2 1 28 28 H 1.08996 * 109.47297 * 300.00116 * 3 2 1 29 29 H 1.08003 * 119.45757 * 359.97438 * 5 4 3 30 30 H 1.08000 * 119.71601 * 179.72624 * 7 6 5 31 31 H 1.08001 * 119.93540 * 359.97438 * 10 9 8 32 32 H 1.07995 * 120.06096 * 180.23151 * 11 10 9 33 33 H 0.96998 * 120.00137 * 180.02562 * 16 15 13 34 34 H 1.07997 * 120.06084 * 179.97438 * 21 12 11 35 35 H 1.08003 * 119.93387 * 180.02562 * 22 21 12 36 36 H 1.07997 * 120.85730 * 0.03058 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5124 1.1865 0.0006 5 6 4.2094 1.1372 1.1951 6 7 5.5240 1.0276 1.2126 7 6 6.2319 0.9711 0.1036 8 6 5.6046 1.0207 -1.1422 9 6 6.4002 0.9577 -2.3884 10 6 5.7561 1.0033 -3.6299 11 6 6.4842 0.9506 -4.7804 12 6 7.8877 0.8391 -4.7184 13 6 8.6458 0.7783 -5.9059 14 1 9.6186 0.3091 -5.9022 15 6 8.1374 1.3259 -7.0900 16 7 7.1526 2.1854 -7.0429 17 14 8.8656 0.8292 -8.7370 18 1 9.9611 -0.1493 -8.5190 19 1 7.8098 0.2115 -9.5790 20 1 9.4051 2.0311 -9.4222 21 6 8.5309 0.7883 -3.4654 22 6 7.7936 0.8476 -2.3211 23 6 4.2096 1.1311 -1.1929 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.6885 1.8463 0.8900 28 1 1.6885 1.8464 -0.8899 29 1 3.6679 1.1850 2.1283 30 1 7.3072 0.8859 0.1586 31 1 4.6801 1.0838 -3.6761 32 1 5.9863 0.9896 -5.7379 33 1 6.8001 2.5645 -7.8631 34 1 9.6062 0.7025 -3.4124 35 1 8.2855 0.8091 -1.3604 36 1 3.6914 1.1725 -2.1395 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242954160.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:39 Heat of formation + Delta-G solvation = -2.005237 kcal Electronic energy + Delta-G solvation = -18905.485618 eV Core-core repulsion = 15932.859331 eV Total energy + Delta-G solvation = -2972.626287 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.83201 -37.89228 -37.41414 -34.19798 -32.65955 -31.97622 -29.73263 -28.96209 -27.35978 -25.54322 -25.38134 -23.06720 -22.14304 -20.47193 -19.97296 -17.66372 -16.74490 -16.42167 -16.26517 -15.74110 -15.43388 -15.06684 -14.61677 -13.99605 -13.38780 -13.24117 -12.91851 -12.85449 -12.68458 -12.42511 -12.01318 -11.93340 -11.69182 -11.49052 -11.32122 -11.16573 -10.78820 -10.66819 -9.97733 -9.80584 -9.60091 -9.54165 -9.22650 -8.93638 -8.72879 -7.72454 -7.20575 -6.99899 -4.52654 1.32548 1.65075 2.69261 2.94586 2.99790 3.00214 3.11020 3.74263 3.79841 4.29454 4.62305 4.83433 4.97562 5.00344 5.21952 5.23633 5.29794 5.45214 5.49385 5.52624 5.55791 5.71568 5.91577 6.04375 6.26828 6.31774 6.56114 6.63901 6.78421 6.85304 7.04483 7.07387 7.16983 7.20480 7.42373 7.71165 7.84859 7.95327 8.05839 8.40023 8.44836 8.62790 8.75046 9.89177 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.026508 B = 0.003929 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.015646 B = 7125.014524 C = 7988.947454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.111 3.889 4 C -0.134 4.134 5 C 0.068 3.932 6 N -0.479 5.479 7 C 0.071 3.929 8 C -0.022 4.022 9 C -0.208 4.208 10 C -0.072 4.072 11 C -0.172 4.172 12 C 0.120 3.880 13 C -0.442 4.442 14 H 0.084 0.916 15 C 0.073 3.927 16 N -0.774 5.774 17 Si 0.912 3.088 18 H -0.257 1.257 19 H -0.269 1.269 20 H -0.272 1.272 21 C -0.229 4.229 22 C -0.059 4.059 23 C -0.088 4.088 24 H 0.085 0.915 25 H 0.040 0.960 26 H 0.041 0.959 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.143 0.857 30 H 0.152 0.848 31 H 0.091 0.909 32 H 0.119 0.881 33 H 0.285 0.715 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.507 -0.539 6.359 10.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.034 3.966 4 C -0.136 4.136 5 C -0.089 4.089 6 N -0.186 5.186 7 C -0.087 4.087 8 C -0.024 4.024 9 C -0.210 4.210 10 C -0.091 4.091 11 C -0.191 4.191 12 C 0.117 3.883 13 C -0.469 4.469 14 H 0.102 0.898 15 C -0.148 4.148 16 N -0.398 5.398 17 Si 0.736 3.264 18 H -0.181 1.181 19 H -0.194 1.194 20 H -0.197 1.197 21 C -0.248 4.248 22 C -0.077 4.077 23 C -0.113 4.113 24 H 0.103 0.897 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.160 0.840 30 H 0.170 0.830 31 H 0.109 0.891 32 H 0.137 0.863 33 H 0.096 0.904 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.102 -0.574 7.006 10.726 hybrid contribution -0.450 0.208 -1.648 1.721 sum -8.552 -0.366 5.358 10.099 Atomic orbital electron populations 1.22744 0.81294 1.02714 0.99865 1.88006 1.19332 1.27636 1.95365 1.21232 0.89779 0.84884 1.00722 1.20355 0.94577 1.03943 0.94759 1.22290 0.90155 0.99944 0.96553 1.67505 1.07799 1.11533 1.31767 1.22838 0.99958 0.98828 0.87071 1.19969 0.92974 0.94682 0.94760 1.17897 0.92522 1.20271 0.90274 1.20496 0.97438 0.98783 0.92349 1.20989 0.93972 1.07119 0.97046 1.17763 0.92147 0.86309 0.92095 1.19805 1.03570 1.30882 0.92674 0.89763 1.26068 0.94154 0.92688 1.01862 1.69817 1.20534 1.18440 1.30967 0.86180 0.80134 0.79696 0.80390 1.18085 1.19400 1.19697 1.20696 0.97888 1.13761 0.92500 1.20383 0.92691 0.97763 0.96888 1.21486 0.93665 0.98584 0.97565 0.89680 0.94160 0.94066 0.92445 0.92427 0.83965 0.83042 0.89084 0.86302 0.90354 0.88504 0.88749 0.85245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.40 16 2 O -0.38 -5.27 10.69 -35.23 -0.38 -5.65 16 3 C 0.11 1.41 6.08 36.01 0.22 1.63 16 4 C -0.13 -2.14 5.52 -104.54 -0.58 -2.72 16 5 C 0.07 1.09 10.85 -17.46 -0.19 0.90 16 6 N -0.48 -8.68 10.35 -12.89 -0.13 -8.81 16 7 C 0.07 1.32 10.60 -17.11 -0.18 1.14 16 8 C -0.02 -0.43 5.90 -104.73 -0.62 -1.05 16 9 C -0.21 -4.55 5.90 -104.63 -0.62 -5.16 16 10 C -0.07 -1.64 9.37 -39.66 -0.37 -2.01 16 11 C -0.17 -4.26 8.63 -39.28 -0.34 -4.60 16 12 C 0.12 3.03 5.57 -106.80 -0.60 2.43 16 13 C -0.44 -10.97 9.03 -37.86 -0.34 -11.31 16 14 H 0.08 2.00 7.91 -52.48 -0.42 1.58 16 15 C 0.07 1.71 5.13 -17.33 -0.09 1.62 16 16 N -0.77 -18.71 10.96 55.55 0.61 -18.10 16 17 Si 0.91 17.34 29.60 -169.99 -5.03 12.31 16 18 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 19 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 20 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 21 C -0.23 -5.35 9.73 -39.28 -0.38 -5.73 16 22 C -0.06 -1.28 9.37 -39.66 -0.37 -1.65 16 23 C -0.09 -1.57 9.21 -38.88 -0.36 -1.93 16 24 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 28 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 29 H 0.14 1.89 8.06 -52.48 -0.42 1.46 16 30 H 0.15 2.59 6.21 -52.49 -0.33 2.26 16 31 H 0.09 1.86 6.24 -52.49 -0.33 1.53 16 32 H 0.12 3.01 6.16 -52.49 -0.32 2.69 16 33 H 0.29 6.19 8.30 -40.82 -0.34 5.85 16 34 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 35 H 0.09 1.77 6.21 -52.48 -0.33 1.45 16 36 H 0.13 2.20 6.30 -52.49 -0.33 1.87 16 LS Contribution 308.87 15.07 4.65 4.65 Total: -1.00 -27.44 308.87 -8.11 -35.55 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -4.14 Total: 7.10 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: -3.70 Total: -27.05 kcal Atomic # 7 Polarization: -27.39 SS G_CDS: 0.48 Total: -26.91 kcal Atomic # 8 Polarization: -5.27 SS G_CDS: -0.38 Total: -5.65 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -5.03 Total: 12.31 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.44 -8.11 -35.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242954160.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.547 kcal (2) G-P(sol) polarization free energy of solvation -27.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds