Wall clock time and date at job start Mon Mar 30 2020 00:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99687 * 2 1 4 4 C 1.50700 * 109.46845 * 179.97438 * 3 2 1 5 5 C 1.38376 * 120.34772 * 269.72864 * 4 3 2 6 6 N 1.31932 * 121.08515 * 179.72173 * 5 4 3 7 7 C 1.31694 * 121.87084 * 0.54693 * 6 5 4 8 8 C 1.39571 * 120.56506 * 359.74094 * 7 6 5 9 9 C 1.47991 * 120.56399 * 179.97438 * 8 7 6 10 10 C 1.39933 * 119.88393 * 179.74744 * 9 8 7 11 11 C 1.36255 * 120.12325 * 179.75902 * 10 9 8 12 12 C 1.40928 * 119.87241 * 0.51619 * 11 10 9 13 13 C 1.41027 * 120.11544 * 179.71820 * 12 11 10 14 14 H 1.08007 * 120.00242 * 204.68833 * 13 12 11 15 15 C 1.40012 * 120.00331 * 24.68282 * 13 12 11 16 16 N 1.30794 * 119.99646 * 17.95131 * 15 13 12 17 17 Si 1.86805 * 120.00470 * 197.95084 * 15 13 12 18 18 H 1.48502 * 109.47053 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47324 * 119.99947 * 17 15 13 20 20 H 1.48496 * 109.46785 * 240.00056 * 17 15 13 21 21 C 1.40934 * 119.77050 * 359.74015 * 12 11 10 22 22 C 1.36254 * 119.87093 * 359.97438 * 21 12 11 23 23 C 1.38334 * 120.34336 * 90.00064 * 4 3 2 24 24 H 1.09005 * 109.47105 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47353 * 299.99294 * 1 2 3 26 26 H 1.09002 * 109.47300 * 60.00246 * 1 2 3 27 27 H 1.08996 * 109.46749 * 60.00280 * 3 2 1 28 28 H 1.08996 * 109.47297 * 300.00116 * 3 2 1 29 29 H 1.08003 * 119.45757 * 359.97438 * 5 4 3 30 30 H 1.08000 * 119.71601 * 179.72624 * 7 6 5 31 31 H 1.08001 * 119.93540 * 359.97438 * 10 9 8 32 32 H 1.07995 * 120.06096 * 180.23151 * 11 10 9 33 33 H 0.96998 * 120.00137 * 180.02562 * 16 15 13 34 34 H 1.07997 * 120.06084 * 179.97438 * 21 12 11 35 35 H 1.08003 * 119.93387 * 180.02562 * 22 21 12 36 36 H 1.07997 * 120.85730 * 0.03058 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5124 1.1865 0.0006 5 6 4.2094 1.1372 1.1951 6 7 5.5240 1.0276 1.2126 7 6 6.2319 0.9711 0.1036 8 6 5.6046 1.0207 -1.1422 9 6 6.4002 0.9577 -2.3884 10 6 5.7561 1.0033 -3.6299 11 6 6.4842 0.9506 -4.7804 12 6 7.8877 0.8391 -4.7184 13 6 8.6458 0.7783 -5.9059 14 1 9.6186 0.3091 -5.9022 15 6 8.1374 1.3259 -7.0900 16 7 7.1526 2.1854 -7.0429 17 14 8.8656 0.8292 -8.7370 18 1 9.9611 -0.1493 -8.5190 19 1 7.8098 0.2115 -9.5790 20 1 9.4051 2.0311 -9.4222 21 6 8.5309 0.7883 -3.4654 22 6 7.7936 0.8476 -2.3211 23 6 4.2096 1.1311 -1.1929 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.6885 1.8463 0.8900 28 1 1.6885 1.8464 -0.8899 29 1 3.6679 1.1850 2.1283 30 1 7.3072 0.8859 0.1586 31 1 4.6801 1.0838 -3.6761 32 1 5.9863 0.9896 -5.7379 33 1 6.8001 2.5645 -7.8631 34 1 9.6062 0.7025 -3.4124 35 1 8.2855 0.8091 -1.3604 36 1 3.6914 1.1725 -2.1395 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242954160.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:38 Heat of formation + Delta-G solvation = -16.294583 kcal Electronic energy + Delta-G solvation = -18906.105251 eV Core-core repulsion = 15932.859331 eV Total energy + Delta-G solvation = -2973.245919 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.22433 -39.38215 -38.61421 -35.90669 -33.98975 -33.50518 -31.50065 -30.61436 -28.32153 -27.18626 -26.40839 -24.55866 -23.67226 -22.14489 -21.55558 -19.41455 -18.16257 -17.52194 -17.33913 -17.18423 -16.89402 -16.16399 -15.98614 -15.57332 -14.97216 -14.79230 -14.51641 -14.36979 -13.84186 -13.68982 -13.54522 -13.32125 -13.18330 -12.82569 -12.79864 -12.44669 -12.34015 -12.13404 -11.66599 -11.29657 -11.25120 -10.75587 -10.66943 -10.34722 -10.18636 -9.52599 -8.92821 -8.71432 -6.36541 -0.11402 0.25334 1.08974 1.17306 1.38345 1.52958 1.55453 2.16767 2.55576 2.84081 3.21840 3.56647 3.74198 3.85930 3.88780 4.03388 4.11395 4.26675 4.36659 4.39849 4.46341 4.57877 4.58721 4.77042 4.86620 4.88530 4.99495 5.04656 5.14504 5.28270 5.31265 5.44929 5.64307 5.73047 5.98239 6.03409 6.16881 6.21366 6.26875 6.59346 6.82147 6.93487 7.06182 8.20569 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.026508 B = 0.003929 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.015646 B = 7125.014524 C = 7988.947454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.414 6.414 3 C 0.111 3.889 4 C -0.134 4.134 5 C 0.078 3.922 6 N -0.493 5.493 7 C 0.070 3.930 8 C -0.050 4.050 9 C -0.202 4.202 10 C -0.080 4.080 11 C -0.194 4.194 12 C 0.089 3.911 13 C -0.482 4.482 14 H 0.083 0.917 15 C 0.035 3.965 16 N -0.810 5.810 17 Si 0.986 3.014 18 H -0.256 1.256 19 H -0.263 1.263 20 H -0.264 1.264 21 C -0.244 4.244 22 C -0.065 4.065 23 C -0.090 4.090 24 H 0.093 0.907 25 H 0.059 0.941 26 H 0.049 0.951 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.178 0.822 30 H 0.162 0.838 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.293 0.707 34 H 0.105 0.895 35 H 0.123 0.877 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.060 -0.514 7.942 12.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.334 6.334 3 C 0.035 3.965 4 C -0.136 4.136 5 C -0.079 4.079 6 N -0.201 5.201 7 C -0.087 4.087 8 C -0.052 4.052 9 C -0.204 4.204 10 C -0.098 4.098 11 C -0.213 4.213 12 C 0.086 3.914 13 C -0.510 4.510 14 H 0.101 0.899 15 C -0.182 4.182 16 N -0.434 5.434 17 Si 0.806 3.194 18 H -0.180 1.180 19 H -0.187 1.187 20 H -0.189 1.189 21 C -0.263 4.263 22 C -0.083 4.083 23 C -0.115 4.115 24 H 0.112 0.888 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.105 0.895 28 H 0.086 0.914 29 H 0.195 0.805 30 H 0.179 0.821 31 H 0.126 0.874 32 H 0.122 0.878 33 H 0.104 0.896 34 H 0.123 0.877 35 H 0.141 0.859 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.660 -0.548 8.609 12.951 hybrid contribution -0.201 0.208 -1.798 1.821 sum -9.862 -0.340 6.810 11.990 Atomic orbital electron populations 1.22959 0.79093 1.03835 1.01245 1.87946 1.21748 1.28070 1.95671 1.21295 0.87394 0.85103 1.02720 1.20715 0.96718 1.02370 0.93761 1.22961 0.89707 0.97131 0.98121 1.67598 1.08860 1.12281 1.31319 1.22991 1.00658 0.98164 0.86847 1.19926 0.93752 0.97365 0.94151 1.18192 0.92979 1.18198 0.91006 1.20713 0.98372 0.98508 0.92244 1.20962 0.94202 1.08952 0.97185 1.18098 0.92686 0.87399 0.93197 1.20008 1.04136 1.32935 0.93881 0.89917 1.26878 0.94372 0.91993 1.04954 1.69856 1.21910 1.19403 1.32259 0.85101 0.79292 0.79381 0.75668 1.17965 1.18743 1.18858 1.20906 0.98568 1.14245 0.92628 1.20690 0.92874 0.97059 0.97638 1.21697 0.93204 0.97781 0.98833 0.88826 0.92215 0.93206 0.89501 0.91446 0.80523 0.82097 0.87357 0.87755 0.89613 0.87692 0.85876 0.84893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 11.01 113.37 1.25 1.63 16 2 O -0.41 -10.08 10.69 -148.98 -1.59 -11.67 16 3 C 0.11 2.43 6.08 71.24 0.43 2.86 16 4 C -0.13 -3.87 5.52 -19.81 -0.11 -3.98 16 5 C 0.08 2.24 10.85 84.71 0.92 3.16 16 6 N -0.49 -16.56 10.35 -194.69 -2.01 -18.57 16 7 C 0.07 2.49 10.60 85.04 0.90 3.40 16 8 C -0.05 -1.91 5.90 -19.94 -0.12 -2.03 16 9 C -0.20 -8.85 5.90 -19.87 -0.12 -8.97 16 10 C -0.08 -3.71 9.37 22.22 0.21 -3.50 16 11 C -0.19 -10.02 8.63 22.47 0.19 -9.83 16 12 C 0.09 4.70 5.57 -21.28 -0.12 4.58 16 13 C -0.48 -25.06 9.03 23.38 0.21 -24.85 16 14 H 0.08 4.12 7.91 -2.91 -0.02 4.10 16 15 C 0.04 1.70 5.13 85.28 0.44 2.14 16 16 N -0.81 -40.63 10.96 21.84 0.24 -40.39 16 17 Si 0.99 36.29 29.60 68.60 2.03 38.32 16 18 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 19 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 20 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 21 C -0.24 -11.74 9.73 22.47 0.22 -11.53 16 22 C -0.06 -2.82 9.37 22.22 0.21 -2.61 16 23 C -0.09 -3.06 9.21 22.73 0.21 -2.85 16 24 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 25 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.09 1.39 8.09 -2.39 -0.02 1.37 16 28 H 0.07 1.34 8.09 -2.39 -0.02 1.32 16 29 H 0.18 3.82 8.06 -2.91 -0.02 3.80 16 30 H 0.16 5.23 6.21 -2.91 -0.02 5.21 16 31 H 0.11 4.48 6.24 -2.91 -0.02 4.46 16 32 H 0.10 5.59 6.16 -2.91 -0.02 5.57 16 33 H 0.29 13.11 8.30 -92.71 -0.77 12.34 16 34 H 0.10 4.70 8.06 -2.91 -0.02 4.68 16 35 H 0.12 4.52 6.21 -2.91 -0.02 4.50 16 36 H 0.13 4.36 6.30 -2.91 -0.02 4.34 16 Total: -1.00 -60.65 308.87 4.48 -56.16 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: 1.09 Total: 28.53 kcal Atomic # 6 Polarization: -57.10 SS G_CDS: 4.73 Total: -52.38 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: -1.78 Total: -58.97 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: -1.59 Total: -11.67 kcal Atomic # 14 Polarization: 36.29 SS G_CDS: 2.03 Total: 38.32 kcal Total: -60.65 4.48 -56.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242954160.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.866 kcal (2) G-P(sol) polarization free energy of solvation -60.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds