Wall clock time and date at job start Mon Mar 30 2020 00:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99668 * 2 1 4 4 C 1.50704 * 109.47262 * 179.97438 * 3 2 1 5 5 C 1.38314 * 120.35636 * 270.02393 * 4 3 2 6 6 N 1.31889 * 121.02351 * 179.97438 * 5 4 3 7 7 C 1.31747 * 121.85108 * 0.04815 * 6 5 4 8 8 C 1.39295 * 120.59842 * 359.94985 * 7 6 5 9 9 C 1.48415 * 120.53295 * 180.29681 * 8 7 6 10 10 C 1.39725 * 119.99564 * 179.44910 * 9 8 7 11 11 C 1.38389 * 120.37829 * 179.76251 * 10 9 8 12 12 C 1.37723 * 120.38170 * 0.51145 * 11 10 9 13 13 C 1.40757 * 119.98212 * 359.74714 * 12 11 10 14 14 C 1.41427 * 120.18180 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99437 * 204.48371 * 14 13 12 16 16 C 1.39927 * 120.00300 * 24.48039 * 14 13 12 17 17 N 1.30832 * 120.00052 * 17.90037 * 16 14 13 18 18 Si 1.86799 * 120.00033 * 197.89967 * 16 14 13 19 19 H 1.48498 * 109.47383 * 59.99744 * 18 16 14 20 20 H 1.48506 * 109.47251 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47085 * 299.99843 * 18 16 14 22 22 C 1.38729 * 120.00270 * 359.72253 * 9 8 7 23 23 C 1.38409 * 120.35964 * 89.99608 * 4 3 2 24 24 H 1.09001 * 109.47611 * 300.00039 * 1 2 3 25 25 H 1.09003 * 109.47389 * 60.00483 * 1 2 3 26 26 H 1.09000 * 109.46875 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47342 * 60.00018 * 3 2 1 28 28 H 1.08998 * 109.47219 * 299.99807 * 3 2 1 29 29 H 1.07992 * 119.49207 * 359.97438 * 5 4 3 30 30 H 1.08007 * 119.70520 * 179.97438 * 7 6 5 31 31 H 1.08004 * 119.81406 * 0.02562 * 10 9 8 32 32 H 1.08005 * 119.81617 * 180.23798 * 11 10 9 33 33 H 1.07997 * 120.00920 * 179.71814 * 12 11 10 34 34 H 0.96992 * 119.99913 * 180.02562 * 17 16 14 35 35 H 1.07999 * 120.18310 * 0.02562 * 22 9 8 36 36 H 1.08008 * 120.84455 * 0.02562 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 6 4.2088 1.1312 1.1944 6 7 5.5234 1.0267 1.2103 7 6 6.2300 0.9715 0.0997 8 6 5.6026 1.0214 -1.1429 9 6 6.3994 0.9525 -2.3932 10 6 5.7576 0.9920 -3.6336 11 6 6.4932 0.9332 -4.8044 12 6 7.8654 0.8246 -4.7601 13 6 8.5277 0.7782 -3.5189 14 6 9.9367 0.6672 -3.4686 15 1 10.4142 0.2448 -2.5969 16 6 10.7120 1.1047 -4.5481 17 7 10.1989 1.9186 -5.4347 18 14 12.4797 0.5268 -4.7234 19 1 12.5074 -0.9535 -4.8384 20 1 13.0792 1.1297 -5.9410 21 1 13.2580 0.9452 -3.5299 22 6 7.7810 0.8433 -2.3301 23 6 4.2103 1.1312 -1.1934 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6885 1.8465 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.6676 1.1742 2.1280 30 1 7.3053 0.8864 0.1532 31 1 4.6816 1.0731 -3.6792 32 1 5.9880 0.9683 -5.7583 33 1 8.4331 0.7747 -5.6775 34 1 10.7363 2.2216 -6.1832 35 1 8.2797 0.8076 -1.3728 36 1 3.6921 1.1724 -2.1401 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242954383.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:41 Heat of formation + Delta-G solvation = 0.049018 kcal Electronic energy + Delta-G solvation = -18923.005583 eV Core-core repulsion = 15950.468375 eV Total energy + Delta-G solvation = -2972.537207 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.03285 -37.93004 -37.36632 -34.02299 -32.77908 -32.12468 -30.00056 -28.26032 -27.44923 -25.75201 -25.18170 -23.41351 -22.30503 -20.40290 -20.03826 -17.41775 -16.82154 -16.52095 -16.38709 -15.58631 -15.37192 -15.19517 -14.69513 -14.04733 -13.55276 -13.23862 -12.97546 -12.84787 -12.79159 -12.50229 -12.26312 -11.75756 -11.66775 -11.36829 -11.29379 -11.04849 -10.76935 -10.55343 -9.89210 -9.87495 -9.60449 -9.57533 -9.23313 -9.02621 -8.89390 -7.58779 -7.11489 -6.82261 -4.43674 1.17658 1.48879 2.74578 2.97516 3.04250 3.06874 3.18596 3.71609 3.89345 4.27961 4.62526 4.69414 4.85162 4.87353 5.13935 5.15539 5.16469 5.30640 5.36299 5.46583 5.49599 5.62335 5.81056 5.98374 6.25428 6.30317 6.44390 6.48970 6.80047 6.90556 6.96748 7.02709 7.16209 7.24335 7.45539 7.73013 7.92086 7.95274 8.14560 8.28583 8.53058 8.80708 8.85398 10.12678 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.035632 B = 0.003783 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.629073 B = 7400.248626 C = 7996.405286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.111 3.889 4 C -0.147 4.147 5 C 0.094 3.906 6 N -0.485 5.485 7 C 0.101 3.899 8 C -0.058 4.058 9 C -0.041 4.041 10 C -0.220 4.220 11 C -0.107 4.107 12 C -0.152 4.152 13 C 0.108 3.892 14 C -0.464 4.464 15 H 0.079 0.921 16 C 0.077 3.923 17 N -0.794 5.794 18 Si 0.909 3.091 19 H -0.263 1.263 20 H -0.278 1.278 21 H -0.265 1.265 22 C -0.201 4.201 23 C -0.060 4.060 24 H 0.040 0.960 25 H 0.041 0.959 26 H 0.085 0.915 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.148 0.852 30 H 0.161 0.839 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.120 0.880 34 H 0.282 0.718 35 H 0.099 0.901 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.233 -0.353 6.003 13.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.034 3.966 4 C -0.149 4.149 5 C -0.063 4.063 6 N -0.192 5.192 7 C -0.056 4.056 8 C -0.060 4.060 9 C -0.042 4.042 10 C -0.239 4.239 11 C -0.125 4.125 12 C -0.171 4.171 13 C 0.105 3.895 14 C -0.493 4.493 15 H 0.097 0.903 16 C -0.141 4.141 17 N -0.419 5.419 18 Si 0.733 3.267 19 H -0.188 1.188 20 H -0.203 1.203 21 H -0.189 1.189 22 C -0.221 4.221 23 C -0.086 4.086 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.104 0.896 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.165 0.835 30 H 0.178 0.822 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.138 0.862 34 H 0.093 0.907 35 H 0.117 0.883 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.614 -0.406 6.603 13.366 hybrid contribution 0.107 0.151 -1.061 1.077 sum -11.507 -0.255 5.543 12.775 Atomic orbital electron populations 1.22751 0.81156 1.02794 0.99912 1.88006 1.19447 1.27538 1.95378 1.21221 0.89474 0.84984 1.00905 1.20426 0.94915 1.04861 0.94691 1.22483 0.90219 0.96800 0.96828 1.67649 1.07750 1.12218 1.31575 1.23047 1.00565 0.95061 0.86882 1.20138 0.93267 0.97441 0.95184 1.18153 0.92877 1.03142 0.89985 1.20390 0.97145 1.14417 0.91946 1.20628 0.94716 1.01220 0.95977 1.21460 0.92501 1.04462 0.98723 1.17528 0.93250 0.88072 0.90616 1.19547 0.91201 1.36389 1.02177 0.90280 1.25901 1.01012 0.92570 0.94647 1.69805 1.38659 1.22485 1.10960 0.86355 0.81550 0.80235 0.78545 1.18765 1.20335 1.18936 1.21069 0.91830 1.11572 0.97583 1.21574 0.93581 0.95579 0.97859 0.94093 0.94039 0.89615 0.92278 0.92318 0.83475 0.82200 0.89142 0.89044 0.86220 0.90723 0.88316 0.84759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.89 10.69 -35.23 -0.38 -5.26 16 3 C 0.11 1.28 6.08 36.01 0.22 1.50 16 4 C -0.15 -2.18 5.52 -104.53 -0.58 -2.75 16 5 C 0.09 1.42 10.85 -17.50 -0.19 1.23 16 6 N -0.48 -8.47 10.35 -12.97 -0.13 -8.61 16 7 C 0.10 1.87 10.60 -17.20 -0.18 1.68 16 8 C -0.06 -1.12 5.89 -104.75 -0.62 -1.74 16 9 C -0.04 -0.90 5.87 -104.97 -0.62 -1.51 16 10 C -0.22 -4.76 9.45 -38.97 -0.37 -5.13 16 11 C -0.11 -2.43 10.01 -39.71 -0.40 -2.83 16 12 C -0.15 -3.84 8.69 -38.82 -0.34 -4.18 16 13 C 0.11 2.79 5.57 -106.86 -0.60 2.19 16 14 C -0.46 -11.99 9.05 -37.74 -0.34 -12.33 16 15 H 0.08 1.96 7.91 -52.49 -0.42 1.54 16 16 C 0.08 1.88 5.14 -17.35 -0.09 1.79 16 17 N -0.79 -20.06 10.96 55.55 0.61 -19.45 16 18 Si 0.91 18.30 29.59 -169.99 -5.03 13.27 16 19 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 20 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 21 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 22 C -0.20 -4.77 9.18 -38.53 -0.35 -5.13 16 23 C -0.06 -1.02 9.21 -38.95 -0.36 -1.37 16 24 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 28 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 29 H 0.15 1.78 8.06 -52.49 -0.42 1.35 16 30 H 0.16 2.82 6.22 -52.48 -0.33 2.50 16 31 H 0.09 1.72 6.25 -52.48 -0.33 1.39 16 32 H 0.09 1.84 8.06 -52.48 -0.42 1.42 16 33 H 0.12 3.11 6.15 -52.49 -0.32 2.79 16 34 H 0.28 6.49 8.30 -40.82 -0.34 6.16 16 35 H 0.10 2.17 6.22 -52.49 -0.33 1.85 16 36 H 0.13 2.09 6.31 -52.48 -0.33 1.76 16 LS Contribution 309.11 15.07 4.66 4.66 Total: -1.00 -28.28 309.11 -8.11 -36.38 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -4.14 Total: 6.21 kcal Atomic # 6 Polarization: -23.50 SS G_CDS: -3.69 Total: -27.19 kcal Atomic # 7 Polarization: -28.54 SS G_CDS: 0.47 Total: -28.06 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: -0.38 Total: -5.26 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.27 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.28 -8.11 -36.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242954383.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.430 kcal (2) G-P(sol) polarization free energy of solvation -28.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds