Wall clock time and date at job start Mon Mar 30 2020 00:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99668 * 2 1 4 4 C 1.50704 * 109.47262 * 179.97438 * 3 2 1 5 5 C 1.38314 * 120.35636 * 270.02393 * 4 3 2 6 6 N 1.31889 * 121.02351 * 179.97438 * 5 4 3 7 7 C 1.31747 * 121.85108 * 0.04815 * 6 5 4 8 8 C 1.39295 * 120.59842 * 359.94985 * 7 6 5 9 9 C 1.48415 * 120.53295 * 180.29681 * 8 7 6 10 10 C 1.39725 * 119.99564 * 179.44910 * 9 8 7 11 11 C 1.38389 * 120.37829 * 179.76251 * 10 9 8 12 12 C 1.37723 * 120.38170 * 0.51145 * 11 10 9 13 13 C 1.40757 * 119.98212 * 359.74714 * 12 11 10 14 14 C 1.41427 * 120.18180 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99437 * 204.48371 * 14 13 12 16 16 C 1.39927 * 120.00300 * 24.48039 * 14 13 12 17 17 N 1.30832 * 120.00052 * 17.90037 * 16 14 13 18 18 Si 1.86799 * 120.00033 * 197.89967 * 16 14 13 19 19 H 1.48498 * 109.47383 * 59.99744 * 18 16 14 20 20 H 1.48506 * 109.47251 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47085 * 299.99843 * 18 16 14 22 22 C 1.38729 * 120.00270 * 359.72253 * 9 8 7 23 23 C 1.38409 * 120.35964 * 89.99608 * 4 3 2 24 24 H 1.09001 * 109.47611 * 300.00039 * 1 2 3 25 25 H 1.09003 * 109.47389 * 60.00483 * 1 2 3 26 26 H 1.09000 * 109.46875 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47342 * 60.00018 * 3 2 1 28 28 H 1.08998 * 109.47219 * 299.99807 * 3 2 1 29 29 H 1.07992 * 119.49207 * 359.97438 * 5 4 3 30 30 H 1.08007 * 119.70520 * 179.97438 * 7 6 5 31 31 H 1.08004 * 119.81406 * 0.02562 * 10 9 8 32 32 H 1.08005 * 119.81617 * 180.23798 * 11 10 9 33 33 H 1.07997 * 120.00920 * 179.71814 * 12 11 10 34 34 H 0.96992 * 119.99913 * 180.02562 * 17 16 14 35 35 H 1.07999 * 120.18310 * 0.02562 * 22 9 8 36 36 H 1.08008 * 120.84455 * 0.02562 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 6 4.2088 1.1312 1.1944 6 7 5.5234 1.0267 1.2103 7 6 6.2300 0.9715 0.0997 8 6 5.6026 1.0214 -1.1429 9 6 6.3994 0.9525 -2.3932 10 6 5.7576 0.9920 -3.6336 11 6 6.4932 0.9332 -4.8044 12 6 7.8654 0.8246 -4.7601 13 6 8.5277 0.7782 -3.5189 14 6 9.9367 0.6672 -3.4686 15 1 10.4142 0.2448 -2.5969 16 6 10.7120 1.1047 -4.5481 17 7 10.1989 1.9186 -5.4347 18 14 12.4797 0.5268 -4.7234 19 1 12.5074 -0.9535 -4.8384 20 1 13.0792 1.1297 -5.9410 21 1 13.2580 0.9452 -3.5299 22 6 7.7810 0.8433 -2.3301 23 6 4.2103 1.1312 -1.1934 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6885 1.8465 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.6676 1.1742 2.1280 30 1 7.3053 0.8864 0.1532 31 1 4.6816 1.0731 -3.6792 32 1 5.9880 0.9683 -5.7583 33 1 8.4331 0.7747 -5.6775 34 1 10.7363 2.2216 -6.1832 35 1 8.2797 0.8076 -1.3728 36 1 3.6921 1.1724 -2.1401 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242954383.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:40 Heat of formation + Delta-G solvation = -15.175429 kcal Electronic energy + Delta-G solvation = -18923.665764 eV Core-core repulsion = 15950.468375 eV Total energy + Delta-G solvation = -2973.197389 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.35084 -39.30300 -38.60708 -35.79765 -34.02457 -33.63751 -31.82190 -29.83822 -28.38792 -27.27588 -26.34785 -24.84699 -23.73180 -22.13773 -21.61543 -19.11373 -18.24439 -17.57732 -17.33442 -17.13152 -16.65043 -16.36208 -16.17424 -15.52931 -14.98617 -14.89040 -14.54552 -14.33516 -13.94666 -13.80387 -13.51560 -13.21903 -13.01534 -12.91056 -12.58759 -12.52381 -12.29776 -12.15990 -11.61913 -11.37354 -11.16987 -10.86029 -10.66533 -10.39219 -10.28182 -9.44218 -8.82433 -8.64797 -6.37089 -0.21131 0.17698 0.97149 1.27999 1.38640 1.49354 1.55889 2.20573 2.58368 2.81474 3.17274 3.46730 3.73544 3.78167 3.82291 3.96915 4.02508 4.18829 4.35778 4.45845 4.55607 4.59787 4.61331 4.68633 4.81315 4.91258 4.98165 5.08888 5.11379 5.19329 5.27713 5.45852 5.62558 5.72681 5.94612 6.04726 6.11891 6.22467 6.32533 6.65011 6.91002 6.95625 6.98520 8.32059 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.035632 B = 0.003783 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.629073 B = 7400.248626 C = 7996.405286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.112 3.888 4 C -0.141 4.141 5 C 0.100 3.900 6 N -0.500 5.500 7 C 0.092 3.908 8 C -0.087 4.087 9 C -0.037 4.037 10 C -0.220 4.220 11 C -0.108 4.108 12 C -0.183 4.183 13 C 0.079 3.921 14 C -0.502 4.502 15 H 0.076 0.924 16 C 0.037 3.963 17 N -0.825 5.825 18 Si 0.981 3.019 19 H -0.261 1.261 20 H -0.267 1.267 21 H -0.260 1.260 22 C -0.222 4.222 23 C -0.059 4.059 24 H 0.058 0.942 25 H 0.051 0.949 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.184 0.816 30 H 0.154 0.846 31 H 0.123 0.877 32 H 0.117 0.883 33 H 0.104 0.896 34 H 0.289 0.711 35 H 0.103 0.897 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.469 -0.217 6.998 16.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C 0.035 3.965 4 C -0.143 4.143 5 C -0.057 4.057 6 N -0.208 5.208 7 C -0.064 4.064 8 C -0.089 4.089 9 C -0.037 4.037 10 C -0.239 4.239 11 C -0.126 4.126 12 C -0.202 4.202 13 C 0.077 3.923 14 C -0.532 4.532 15 H 0.094 0.906 16 C -0.178 4.178 17 N -0.451 5.451 18 Si 0.802 3.198 19 H -0.185 1.185 20 H -0.191 1.191 21 H -0.184 1.184 22 C -0.241 4.241 23 C -0.084 4.084 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.111 0.889 27 H 0.106 0.894 28 H 0.091 0.909 29 H 0.201 0.799 30 H 0.172 0.828 31 H 0.141 0.859 32 H 0.135 0.865 33 H 0.122 0.878 34 H 0.099 0.901 35 H 0.121 0.879 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -13.867 -0.266 7.601 15.816 hybrid contribution 0.528 0.123 -1.220 1.335 sum -13.339 -0.143 6.381 14.788 Atomic orbital electron populations 1.22956 0.79032 1.03812 1.01308 1.87947 1.21771 1.28045 1.95694 1.21301 0.86903 0.85168 1.03090 1.20793 0.97075 1.02845 0.93594 1.23163 0.89518 0.94409 0.98631 1.67695 1.09110 1.12981 1.30988 1.22991 1.00655 0.95556 0.87222 1.20018 0.94339 1.00460 0.94052 1.18444 0.92504 1.01093 0.91689 1.20766 0.98749 1.13112 0.91313 1.20932 0.93920 1.00027 0.97733 1.21424 0.93721 1.07097 0.97962 1.17878 0.93920 0.88811 0.91657 1.19805 0.91887 1.38204 1.03266 0.90584 1.26724 1.05206 0.92048 0.93817 1.69860 1.40447 1.23221 1.11557 0.85271 0.76101 0.79595 0.78871 1.18541 1.19113 1.18431 1.21233 0.93029 1.12611 0.97232 1.21787 0.92535 0.94636 0.99445 0.92302 0.92995 0.88928 0.89429 0.90883 0.79926 0.82845 0.85934 0.86501 0.87831 0.90058 0.87934 0.83499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 11.01 113.37 1.25 1.58 16 2 O -0.41 -9.05 10.69 -148.98 -1.59 -10.64 16 3 C 0.11 2.12 6.08 71.24 0.43 2.55 16 4 C -0.14 -3.73 5.52 -19.80 -0.11 -3.84 16 5 C 0.10 2.73 10.85 84.70 0.92 3.65 16 6 N -0.50 -16.80 10.35 -194.96 -2.02 -18.82 16 7 C 0.09 3.39 10.60 84.96 0.90 4.29 16 8 C -0.09 -3.28 5.89 -19.95 -0.12 -3.40 16 9 C -0.04 -1.62 5.87 -20.09 -0.12 -1.74 16 10 C -0.22 -9.39 9.45 22.67 0.21 -9.18 16 11 C -0.11 -4.93 10.01 22.18 0.22 -4.71 16 12 C -0.18 -9.60 8.69 22.76 0.20 -9.40 16 13 C 0.08 4.32 5.57 -21.32 -0.12 4.20 16 14 C -0.50 -27.28 9.05 23.46 0.21 -27.06 16 15 H 0.08 3.98 7.91 -2.91 -0.02 3.96 16 16 C 0.04 1.87 5.14 85.25 0.44 2.31 16 17 N -0.82 -43.16 10.96 21.82 0.24 -42.92 16 18 Si 0.98 38.34 29.59 68.60 2.03 40.37 16 19 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 20 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 21 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 22 C -0.22 -10.98 9.18 22.95 0.21 -10.77 16 23 C -0.06 -1.84 9.21 22.68 0.21 -1.63 16 24 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.09 1.18 8.09 -2.38 -0.02 1.16 16 28 H 0.07 1.19 8.09 -2.39 -0.02 1.17 16 29 H 0.18 3.60 8.06 -2.91 -0.02 3.58 16 30 H 0.15 5.66 6.22 -2.91 -0.02 5.64 16 31 H 0.12 4.35 6.25 -2.91 -0.02 4.33 16 32 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 33 H 0.10 5.67 6.15 -2.91 -0.02 5.65 16 34 H 0.29 13.65 8.30 -92.71 -0.77 12.88 16 35 H 0.10 4.81 6.22 -2.91 -0.02 4.79 16 36 H 0.15 4.14 6.31 -2.91 -0.02 4.12 16 Total: -1.00 -63.22 309.11 4.50 -58.72 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: 1.09 Total: 26.44 kcal Atomic # 6 Polarization: -57.90 SS G_CDS: 4.74 Total: -53.16 kcal Atomic # 7 Polarization: -59.96 SS G_CDS: -1.78 Total: -61.74 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -1.59 Total: -10.64 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 2.03 Total: 40.37 kcal Total: -63.22 4.50 -58.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242954383.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.545 kcal (2) G-P(sol) polarization free energy of solvation -63.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds