Wall clock time and date at job start Mon Mar 30 2020 00:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.39482 * 119.99605 * 2 1 4 4 C 1.38758 * 120.14223 * 0.02562 * 3 2 1 5 5 C 1.38148 * 120.04803 * 179.70591 * 4 3 2 6 6 C 1.38430 * 120.33285 * 0.26428 * 5 4 3 7 7 C 1.38005 * 120.28300 * 0.02988 * 6 5 4 8 8 C 1.39328 * 119.94525 * 359.97438 * 7 6 5 9 9 C 1.48205 * 120.16406 * 179.97438 * 8 7 6 10 10 C 1.39327 * 120.15661 * 64.72531 * 9 8 7 11 11 C 1.38018 * 119.93666 * 179.74725 * 10 9 8 12 12 C 1.38452 * 120.27140 * 0.52974 * 11 10 9 13 13 C 1.38126 * 120.32857 * 359.74742 * 12 11 10 14 14 C 1.38734 * 120.05751 * 359.97061 * 13 12 11 15 15 O 1.35677 * 120.13786 * 179.97438 * 14 13 12 16 16 C 1.34807 * 116.99903 * 354.40994 * 15 14 13 17 17 H 1.08004 * 120.00207 * 5.05977 * 16 15 14 18 18 C 1.38636 * 120.00187 * 185.05918 * 16 15 14 19 19 N 1.31567 * 119.99787 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00183 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46702 * 90.00401 * 20 18 16 22 22 H 1.48496 * 109.47027 * 209.99855 * 20 18 16 23 23 H 1.48495 * 109.47305 * 330.00223 * 20 18 16 24 24 H 1.09006 * 109.46606 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47365 * 299.99690 * 1 2 3 26 26 H 1.08994 * 109.47503 * 60.00300 * 1 2 3 27 27 H 0.96993 * 120.00072 * 179.97438 * 2 1 3 28 28 H 1.07998 * 119.97744 * 359.97113 * 4 3 2 29 29 H 1.07994 * 119.83419 * 180.24975 * 5 4 3 30 30 H 1.08001 * 119.85370 * 179.97438 * 6 5 4 31 31 H 1.08000 * 120.02104 * 179.97438 * 7 6 5 32 32 H 1.07997 * 120.03322 * 0.02562 * 10 9 8 33 33 H 1.07997 * 119.86656 * 180.27328 * 11 10 9 34 34 H 1.07996 * 119.83371 * 179.76583 * 12 11 10 35 35 H 1.08005 * 119.97040 * 180.02562 * 13 12 11 36 36 H 0.97005 * 119.99745 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1624 1.2080 0.0000 4 6 1.4715 2.4114 0.0005 5 6 2.1641 3.6067 0.0067 6 6 3.5484 3.6125 0.0068 7 6 4.2493 2.4238 0.0002 8 6 3.5626 1.2115 -0.0061 9 6 4.3105 -0.0680 -0.0138 10 6 5.1086 -0.4188 1.0730 11 6 5.7990 -1.6138 1.0633 12 6 5.7109 -2.4619 -0.0275 13 6 4.9276 -2.1225 -1.1134 14 6 4.2231 -0.9273 -1.1156 15 8 3.4536 -0.5921 -2.1815 16 6 3.5063 -1.4064 -3.2546 17 1 4.0768 -2.3224 -3.2099 18 6 2.8280 -1.0682 -4.4154 19 7 2.1326 0.0473 -4.4697 20 14 2.9016 -2.1962 -5.9026 21 1 1.7895 -3.1780 -5.8345 22 1 2.7743 -1.3893 -7.1427 23 1 4.1992 -2.9181 -5.9127 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8899 27 1 1.9500 -0.8400 0.0004 28 1 0.3915 2.4135 0.0005 29 1 1.6229 4.5412 0.0112 30 1 4.0820 4.5515 0.0112 31 1 5.3293 2.4333 -0.0001 32 1 5.1833 0.2417 1.9242 33 1 6.4137 -1.8867 1.9083 34 1 6.2571 -3.3936 -0.0292 35 1 4.8627 -2.7886 -1.9611 36 1 1.6584 0.2842 -5.2821 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243588288.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:54 Heat of formation + Delta-G solvation = 26.521338 kcal Electronic energy + Delta-G solvation = -20280.345135 eV Core-core repulsion = 17308.955854 eV Total energy + Delta-G solvation = -2971.389281 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.51796 -38.14790 -36.28119 -34.78356 -32.35069 -31.83018 -29.14467 -29.08008 -27.96521 -25.43949 -25.15748 -22.78394 -21.41292 -20.71734 -20.27726 -17.93246 -17.28567 -16.51486 -15.69948 -15.11379 -14.59343 -14.53505 -14.04374 -13.70618 -13.60134 -13.45918 -13.37535 -13.10847 -12.68225 -12.47696 -11.83885 -11.68690 -11.64950 -11.37085 -11.17414 -10.90900 -10.76725 -10.64049 -10.44839 -10.25414 -9.47767 -9.32358 -8.85178 -8.36027 -7.90745 -7.22434 -6.59231 -6.43894 -4.02709 1.87929 2.27064 2.36432 2.41312 3.10261 3.12425 3.16413 3.94738 4.17532 4.48814 4.63171 5.07056 5.27220 5.43641 5.57208 5.60566 5.64764 5.69380 5.83101 5.87224 5.96988 6.12018 6.14318 6.18427 6.31177 6.43844 6.63053 6.71060 6.77180 6.98150 7.06598 7.13303 7.22697 7.31047 7.36918 7.41236 7.55215 7.81049 7.98020 8.08149 8.39759 9.00313 9.71367 10.72145 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.014040 B = 0.008340 C = 0.006364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.757532 B = 3356.396319 C = 4398.892989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.734 5.734 3 C 0.246 3.754 4 C -0.202 4.202 5 C -0.081 4.081 6 C -0.189 4.189 7 C -0.066 4.066 8 C -0.088 4.088 9 C -0.124 4.124 10 C -0.062 4.062 11 C -0.216 4.216 12 C -0.073 4.073 13 C -0.238 4.238 14 C 0.157 3.843 15 O -0.157 6.157 16 C -0.396 4.396 17 H 0.090 0.910 18 C 0.043 3.957 19 N -0.851 5.851 20 Si 0.936 3.064 21 H -0.274 1.274 22 H -0.278 1.278 23 H -0.268 1.268 24 H 0.065 0.935 25 H 0.043 0.957 26 H 0.051 0.949 27 H 0.402 0.598 28 H 0.113 0.887 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.127 0.873 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.025 0.638 8.259 8.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.362 5.362 3 C 0.141 3.859 4 C -0.225 4.225 5 C -0.100 4.100 6 C -0.209 4.209 7 C -0.085 4.085 8 C -0.092 4.092 9 C -0.126 4.126 10 C -0.080 4.080 11 C -0.235 4.235 12 C -0.091 4.091 13 C -0.257 4.257 14 C 0.102 3.898 15 O -0.059 6.059 16 C -0.472 4.472 17 H 0.107 0.893 18 C -0.162 4.162 19 N -0.485 5.485 20 Si 0.761 3.239 21 H -0.200 1.200 22 H -0.203 1.203 23 H -0.193 1.193 24 H 0.084 0.916 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.237 0.763 28 H 0.131 0.869 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.144 0.856 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.532 0.962 8.018 8.093 hybrid contribution 0.274 -1.017 -1.005 1.456 sum -0.258 -0.055 7.013 7.018 Atomic orbital electron populations 1.21415 0.81158 1.01676 1.00327 1.44283 1.05018 1.05807 1.81045 1.17733 0.90300 0.86163 0.91688 1.20412 0.98944 0.91245 1.11902 1.20716 0.94144 0.96655 0.98463 1.20629 0.94088 0.97178 1.09007 1.20871 0.98849 0.91221 0.97536 1.18023 0.90470 0.92482 1.08235 1.17753 1.04897 0.95007 0.94943 1.20748 0.95195 0.95925 0.96126 1.20522 1.06355 0.96983 0.99666 1.20793 0.96978 0.98102 0.93225 1.21120 1.04525 0.99191 1.00915 1.19432 0.89940 0.91803 0.88637 1.84039 1.53820 1.48059 1.20025 1.21308 1.33112 1.03265 0.89510 0.89302 1.25234 0.96005 0.96937 0.98012 1.70076 1.28582 1.21703 1.28119 0.85791 0.78962 0.79150 0.80004 1.20008 1.20290 1.19259 0.91594 0.93819 0.93019 0.76310 0.86886 0.87178 0.87267 0.86857 0.87016 0.87647 0.87635 0.85571 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.58 9.94 59.85 0.59 2.17 16 2 N -0.73 -14.38 5.50 -65.18 -0.36 -14.74 16 3 C 0.25 5.08 6.37 -83.51 -0.53 4.55 16 4 C -0.20 -3.78 9.30 -39.42 -0.37 -4.15 16 5 C -0.08 -1.39 10.03 -39.54 -0.40 -1.79 16 6 C -0.19 -3.29 10.03 -39.60 -0.40 -3.68 16 7 C -0.07 -1.27 9.73 -39.26 -0.38 -1.65 16 8 C -0.09 -1.85 4.95 -104.72 -0.52 -2.37 16 9 C -0.12 -2.64 4.53 -104.74 -0.47 -3.12 16 10 C -0.06 -1.13 9.73 -39.26 -0.38 -1.52 16 11 C -0.22 -3.75 10.03 -39.58 -0.40 -4.15 16 12 C -0.07 -1.33 10.03 -39.54 -0.40 -1.72 16 13 C -0.24 -5.10 9.16 -39.44 -0.36 -5.46 16 14 C 0.16 3.70 5.55 -38.74 -0.21 3.48 16 15 O -0.16 -4.30 8.64 0.34 0.00 -4.29 16 16 C -0.40 -10.80 9.49 30.88 0.29 -10.50 16 17 H 0.09 2.27 5.21 -52.48 -0.27 1.99 16 18 C 0.04 1.17 5.49 -17.52 -0.10 1.08 16 19 N -0.85 -24.60 13.67 55.48 0.76 -23.84 16 20 Si 0.94 20.41 29.55 -169.99 -5.02 15.39 16 21 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 22 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 23 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 24 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.04 0.59 7.95 -51.93 -0.41 0.18 16 26 H 0.05 0.87 7.95 -51.93 -0.41 0.46 16 27 H 0.40 8.27 6.82 -40.82 -0.28 8.00 16 28 H 0.11 1.89 6.73 -52.49 -0.35 1.54 16 29 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 30 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 31 H 0.11 1.99 8.06 -52.49 -0.42 1.57 16 32 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 33 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 34 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.13 2.71 5.64 -52.48 -0.30 2.41 16 36 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 308.13 15.07 4.64 4.64 Total: -1.00 -30.32 308.13 -8.13 -38.45 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -4.12 Total: 13.23 kcal Atomic # 6 Polarization: -24.80 SS G_CDS: -4.03 Total: -28.83 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.40 Total: -38.58 kcal Atomic # 8 Polarization: -4.30 SS G_CDS: 0.00 Total: -4.29 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.32 -8.13 -38.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243588288.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.967 kcal (2) G-P(sol) polarization free energy of solvation -30.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds