Wall clock time and date at job start Mon Mar 30 2020 00:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.39482 * 119.99605 * 2 1 4 4 C 1.38758 * 120.14223 * 0.02562 * 3 2 1 5 5 C 1.38148 * 120.04803 * 179.70591 * 4 3 2 6 6 C 1.38430 * 120.33285 * 0.26428 * 5 4 3 7 7 C 1.38005 * 120.28300 * 0.02988 * 6 5 4 8 8 C 1.39328 * 119.94525 * 359.97438 * 7 6 5 9 9 C 1.48205 * 120.16406 * 179.97438 * 8 7 6 10 10 C 1.39327 * 120.15661 * 64.72531 * 9 8 7 11 11 C 1.38018 * 119.93666 * 179.74725 * 10 9 8 12 12 C 1.38452 * 120.27140 * 0.52974 * 11 10 9 13 13 C 1.38126 * 120.32857 * 359.74742 * 12 11 10 14 14 C 1.38734 * 120.05751 * 359.97061 * 13 12 11 15 15 O 1.35677 * 120.13786 * 179.97438 * 14 13 12 16 16 C 1.34807 * 116.99903 * 354.40994 * 15 14 13 17 17 H 1.08004 * 120.00207 * 5.05977 * 16 15 14 18 18 C 1.38636 * 120.00187 * 185.05918 * 16 15 14 19 19 N 1.31567 * 119.99787 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00183 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46702 * 90.00401 * 20 18 16 22 22 H 1.48496 * 109.47027 * 209.99855 * 20 18 16 23 23 H 1.48495 * 109.47305 * 330.00223 * 20 18 16 24 24 H 1.09006 * 109.46606 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47365 * 299.99690 * 1 2 3 26 26 H 1.08994 * 109.47503 * 60.00300 * 1 2 3 27 27 H 0.96993 * 120.00072 * 179.97438 * 2 1 3 28 28 H 1.07998 * 119.97744 * 359.97113 * 4 3 2 29 29 H 1.07994 * 119.83419 * 180.24975 * 5 4 3 30 30 H 1.08001 * 119.85370 * 179.97438 * 6 5 4 31 31 H 1.08000 * 120.02104 * 179.97438 * 7 6 5 32 32 H 1.07997 * 120.03322 * 0.02562 * 10 9 8 33 33 H 1.07997 * 119.86656 * 180.27328 * 11 10 9 34 34 H 1.07996 * 119.83371 * 179.76583 * 12 11 10 35 35 H 1.08005 * 119.97040 * 180.02562 * 13 12 11 36 36 H 0.97005 * 119.99745 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1624 1.2080 0.0000 4 6 1.4715 2.4114 0.0005 5 6 2.1641 3.6067 0.0067 6 6 3.5484 3.6125 0.0068 7 6 4.2493 2.4238 0.0002 8 6 3.5626 1.2115 -0.0061 9 6 4.3105 -0.0680 -0.0138 10 6 5.1086 -0.4188 1.0730 11 6 5.7990 -1.6138 1.0633 12 6 5.7109 -2.4619 -0.0275 13 6 4.9276 -2.1225 -1.1134 14 6 4.2231 -0.9273 -1.1156 15 8 3.4536 -0.5921 -2.1815 16 6 3.5063 -1.4064 -3.2546 17 1 4.0768 -2.3224 -3.2099 18 6 2.8280 -1.0682 -4.4154 19 7 2.1326 0.0473 -4.4697 20 14 2.9016 -2.1962 -5.9026 21 1 1.7895 -3.1780 -5.8345 22 1 2.7743 -1.3893 -7.1427 23 1 4.1992 -2.9181 -5.9127 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8899 27 1 1.9500 -0.8400 0.0004 28 1 0.3915 2.4135 0.0005 29 1 1.6229 4.5412 0.0112 30 1 4.0820 4.5515 0.0112 31 1 5.3293 2.4333 -0.0001 32 1 5.1833 0.2417 1.9242 33 1 6.4137 -1.8867 1.9083 34 1 6.2571 -3.3936 -0.0292 35 1 4.8627 -2.7886 -1.9611 36 1 1.6584 0.2842 -5.2821 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243588288.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:53 Heat of formation + Delta-G solvation = 9.370125 kcal Electronic energy + Delta-G solvation = -20281.088867 eV Core-core repulsion = 17308.955854 eV Total energy + Delta-G solvation = -2972.133014 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.09707 -39.69814 -37.94939 -36.18951 -34.26053 -33.36055 -30.69769 -30.52114 -29.49187 -27.29911 -26.60156 -24.27939 -23.05984 -22.17046 -21.77612 -19.74112 -18.92015 -18.06508 -17.17658 -16.64501 -16.26302 -16.22011 -15.52179 -15.32697 -15.09892 -14.98074 -14.86747 -14.54786 -14.34259 -14.00004 -13.53703 -13.24765 -13.00688 -12.93229 -12.64029 -12.52615 -12.30006 -12.14816 -12.10240 -11.74528 -11.07635 -10.88347 -10.77266 -9.86401 -9.41368 -8.88784 -8.41290 -8.06424 -6.07268 0.37425 0.74206 0.82333 0.95302 1.33227 1.41493 1.48960 2.16965 2.75260 2.86316 3.11449 3.22129 3.57498 3.98400 4.16140 4.25292 4.30885 4.34352 4.34906 4.58445 4.63750 4.69952 4.72413 4.79904 4.85810 5.00963 5.11946 5.17395 5.20363 5.29234 5.52976 5.65215 5.75478 5.76364 5.80489 5.86500 6.05799 6.15621 6.26840 6.65484 6.85939 7.02905 7.86936 8.79431 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.014040 B = 0.008340 C = 0.006364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.757532 B = 3356.396319 C = 4398.892989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.744 5.744 3 C 0.221 3.779 4 C -0.216 4.216 5 C -0.080 4.080 6 C -0.190 4.190 7 C -0.080 4.080 8 C -0.121 4.121 9 C -0.127 4.127 10 C -0.065 4.065 11 C -0.192 4.192 12 C -0.072 4.072 13 C -0.252 4.252 14 C 0.124 3.876 15 O -0.200 6.200 16 C -0.412 4.412 17 H 0.095 0.905 18 C -0.015 4.015 19 N -0.907 5.907 20 Si 1.008 2.992 21 H -0.265 1.265 22 H -0.275 1.275 23 H -0.257 1.257 24 H 0.081 0.919 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.392 0.608 28 H 0.127 0.873 29 H 0.145 0.855 30 H 0.141 0.859 31 H 0.123 0.877 32 H 0.137 0.863 33 H 0.148 0.852 34 H 0.142 0.858 35 H 0.117 0.883 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.234 0.323 9.880 9.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.371 5.371 3 C 0.116 3.884 4 C -0.239 4.239 5 C -0.099 4.099 6 C -0.210 4.210 7 C -0.098 4.098 8 C -0.125 4.125 9 C -0.128 4.128 10 C -0.083 4.083 11 C -0.210 4.210 12 C -0.090 4.090 13 C -0.271 4.271 14 C 0.073 3.927 15 O -0.106 6.106 16 C -0.489 4.489 17 H 0.113 0.887 18 C -0.213 4.213 19 N -0.544 5.544 20 Si 0.829 3.171 21 H -0.190 1.190 22 H -0.200 1.200 23 H -0.180 1.180 24 H 0.099 0.901 25 H 0.087 0.913 26 H 0.053 0.947 27 H 0.225 0.775 28 H 0.145 0.855 29 H 0.162 0.838 30 H 0.158 0.842 31 H 0.141 0.859 32 H 0.155 0.845 33 H 0.166 0.834 34 H 0.159 0.841 35 H 0.135 0.865 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.701 0.633 9.692 9.738 hybrid contribution 0.046 -0.900 -1.205 1.505 sum 0.747 -0.267 8.488 8.525 Atomic orbital electron populations 1.21547 0.79493 1.02886 1.00640 1.44449 1.06196 1.05231 1.81182 1.18079 0.90730 0.87078 0.92488 1.20744 0.99900 0.91326 1.11926 1.21163 0.94439 0.97491 0.96799 1.21022 0.94471 0.97809 1.07681 1.21130 0.99553 0.91447 0.97712 1.18306 0.91082 0.93131 1.09994 1.18078 1.04889 0.94942 0.94889 1.21133 0.94352 0.96886 0.95925 1.21059 1.04478 0.95447 1.00048 1.21183 0.96067 0.99610 0.92169 1.21266 1.05253 0.98581 1.02015 1.19920 0.90841 0.93283 0.88701 1.84024 1.56362 1.49126 1.21052 1.21727 1.33214 1.03682 0.90265 0.88726 1.26354 0.95544 0.98544 1.00892 1.70228 1.30925 1.24287 1.28997 0.84732 0.79525 0.77116 0.75775 1.19011 1.20006 1.18047 0.90053 0.91260 0.94698 0.77498 0.85535 0.83751 0.84163 0.85930 0.84478 0.83398 0.84061 0.86544 0.92332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.19 9.94 127.77 1.27 4.46 16 2 N -0.74 -30.14 5.50 -360.12 -1.98 -32.12 16 3 C 0.22 9.32 6.37 38.48 0.25 9.57 16 4 C -0.22 -8.06 9.30 22.37 0.21 -7.85 16 5 C -0.08 -2.64 10.03 22.29 0.22 -2.42 16 6 C -0.19 -6.31 10.03 22.26 0.22 -6.09 16 7 C -0.08 -3.03 9.73 22.48 0.22 -2.81 16 8 C -0.12 -5.15 4.95 -19.93 -0.10 -5.25 16 9 C -0.13 -5.40 4.53 -19.94 -0.09 -5.49 16 10 C -0.06 -2.25 9.73 22.48 0.22 -2.03 16 11 C -0.19 -5.92 10.03 22.27 0.22 -5.70 16 12 C -0.07 -2.45 10.03 22.29 0.22 -2.22 16 13 C -0.25 -10.82 9.16 22.36 0.20 -10.61 16 14 C 0.12 6.02 5.55 22.82 0.13 6.14 16 15 O -0.20 -11.53 8.64 -21.70 -0.19 -11.72 16 16 C -0.41 -23.54 9.49 67.91 0.64 -22.90 16 17 H 0.10 5.03 5.21 -2.91 -0.02 5.01 16 18 C -0.01 -0.82 5.49 84.83 0.47 -0.36 16 19 N -0.91 -55.12 13.67 21.61 0.30 -54.83 16 20 Si 1.01 43.06 29.55 68.60 2.03 45.09 16 21 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 22 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 23 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 24 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 25 H 0.07 1.85 7.95 -2.38 -0.02 1.83 16 26 H 0.03 1.22 7.95 -2.39 -0.02 1.20 16 27 H 0.39 16.91 6.82 -92.71 -0.63 16.28 16 28 H 0.13 4.20 6.73 -2.91 -0.02 4.18 16 29 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 30 H 0.14 3.70 8.06 -2.91 -0.02 3.67 16 31 H 0.12 4.24 8.06 -2.91 -0.02 4.21 16 32 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 33 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 34 H 0.14 3.76 8.06 -2.91 -0.02 3.73 16 35 H 0.12 5.12 5.64 -2.91 -0.02 5.10 16 36 H 0.27 15.12 8.31 -92.70 -0.77 14.35 16 Total: -1.00 -69.61 308.13 4.93 -64.68 By element: Atomic # 1 Polarization: 41.99 SS G_CDS: 0.47 Total: 42.46 kcal Atomic # 6 Polarization: -57.86 SS G_CDS: 4.31 Total: -53.55 kcal Atomic # 7 Polarization: -85.27 SS G_CDS: -1.68 Total: -86.95 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -0.19 Total: -11.72 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -69.61 4.93 -64.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243588288.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.048 kcal (2) G-P(sol) polarization free energy of solvation -69.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds