Wall clock time and date at job start Mon Mar 30 2020 00:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.39684 * 120.00199 * 2 1 4 4 C 1.39017 * 120.01256 * 0.02562 * 3 2 1 5 5 C 1.38177 * 120.17856 * 179.97438 * 4 3 2 6 6 C 1.38072 * 120.20461 * 359.97438 * 5 4 3 7 7 C 1.39401 * 120.02123 * 0.27920 * 6 5 4 8 8 C 1.48339 * 120.08695 * 179.69882 * 7 6 5 9 9 C 1.39434 * 120.04738 * 179.71979 * 8 7 6 10 10 C 1.37834 * 119.94276 * 179.76968 * 9 8 7 11 11 C 1.39003 * 120.05225 * 0.53322 * 10 9 8 12 12 O 1.35695 * 119.94774 * 179.72347 * 11 10 9 13 13 C 1.34816 * 117.00045 * 174.43540 * 12 11 10 14 14 H 1.07999 * 120.00200 * 5.04805 * 13 12 11 15 15 C 1.38649 * 120.00086 * 185.05654 * 13 12 11 16 16 N 1.31559 * 120.00366 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99880 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47379 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47180 * 120.00078 * 17 15 13 20 20 H 1.48506 * 109.47215 * 239.99626 * 17 15 13 21 21 C 1.38997 * 120.10440 * 359.70333 * 11 10 9 22 22 C 1.37838 * 120.05151 * 0.03695 * 21 11 10 23 23 C 1.38671 * 120.01713 * 179.97438 * 3 2 1 24 24 H 1.09001 * 109.47094 * 60.00490 * 1 2 3 25 25 H 1.09008 * 109.47326 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46915 * 299.99655 * 1 2 3 27 27 H 0.97007 * 120.00072 * 180.02562 * 2 1 3 28 28 H 1.08005 * 119.91121 * 359.97438 * 4 3 2 29 29 H 1.08003 * 119.89471 * 179.97438 * 5 4 3 30 30 H 1.08000 * 119.99283 * 180.02562 * 6 5 4 31 31 H 1.08000 * 120.03064 * 0.03135 * 9 8 7 32 32 H 1.07997 * 119.97493 * 180.23704 * 10 9 8 33 33 H 0.96994 * 120.00254 * 180.02562 * 16 15 13 34 34 H 1.07997 * 119.97732 * 180.02562 * 21 11 10 35 35 H 1.08002 * 120.02712 * 180.02562 * 22 21 11 36 36 H 1.08009 * 120.09745 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1634 1.2097 0.0000 4 6 1.4687 2.4138 0.0005 5 6 2.1561 3.6124 0.0011 6 6 3.5368 3.6213 0.0016 7 6 4.2420 2.4188 -0.0043 8 6 5.7254 2.4267 -0.0104 9 6 6.4299 1.2234 -0.0104 10 6 7.8082 1.2333 -0.0210 11 6 8.4958 2.4413 -0.0204 12 8 9.8527 2.4485 -0.0251 13 6 10.4580 3.6475 -0.1408 14 1 9.8683 4.5523 -0.1423 15 6 11.8377 3.7192 -0.2580 16 7 12.5562 2.6171 -0.2559 17 14 12.6763 5.3806 -0.4190 18 1 11.6528 6.4562 -0.3953 19 1 13.6206 5.5701 0.7114 20 1 13.4225 5.4362 -1.7018 21 6 7.7955 3.6420 -0.0155 22 6 6.4172 3.6372 -0.0103 23 6 3.5502 1.2100 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.9500 -0.8401 -0.0004 28 1 0.3886 2.4124 0.0005 29 1 1.6117 4.5452 0.0011 30 1 4.0707 4.5601 0.0024 31 1 5.8962 0.2846 -0.0064 32 1 8.3544 0.3016 -0.0248 33 1 13.5214 2.6673 -0.3375 34 1 8.3318 4.5794 -0.0155 35 1 5.8735 4.5704 -0.0069 36 1 4.0920 0.2757 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243591669.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:56 Heat of formation + Delta-G solvation = 24.421892 kcal Electronic energy + Delta-G solvation = -18759.817147 eV Core-core repulsion = 15788.336827 eV Total energy + Delta-G solvation = -2971.480320 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.58364 -38.72338 -36.68494 -35.16418 -32.44449 -31.33502 -30.57500 -29.61242 -27.52717 -25.85088 -25.40493 -22.88709 -22.27719 -21.08028 -19.96349 -18.06734 -17.52989 -16.94523 -16.06148 -15.49335 -14.73058 -14.54954 -14.37223 -14.33685 -13.70406 -13.59931 -13.52120 -13.39981 -12.84835 -12.64129 -12.38120 -12.30087 -11.74887 -11.43280 -11.37348 -11.24183 -11.01336 -10.66502 -10.47534 -10.37097 -10.01743 -9.35956 -9.08325 -8.60104 -8.24297 -7.41035 -6.91203 -6.52319 -4.08822 1.30571 1.81290 2.21862 2.61861 3.10002 3.11241 3.16751 3.44378 3.91694 4.12254 4.69324 4.92844 5.03926 5.07492 5.11194 5.20307 5.26951 5.40479 5.48460 5.53119 5.67761 5.73127 5.77128 5.91660 6.11972 6.20789 6.32158 6.46386 6.61600 6.75366 6.81836 6.82813 6.96494 7.08513 7.26697 7.37115 7.42816 7.45802 7.70001 7.77141 7.93218 8.93181 9.62112 10.65250 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.045945 B = 0.003362 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.279488 B = 8326.035741 C = 8913.922219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.759 5.759 3 C 0.214 3.786 4 C -0.218 4.218 5 C -0.070 4.070 6 C -0.184 4.184 7 C 0.044 3.956 8 C -0.161 4.161 9 C -0.055 4.055 10 C -0.195 4.195 11 C 0.160 3.840 12 O -0.171 6.171 13 C -0.391 4.391 14 H 0.095 0.905 15 C 0.039 3.961 16 N -0.859 5.859 17 Si 0.943 3.057 18 H -0.266 1.266 19 H -0.275 1.275 20 H -0.275 1.275 21 C -0.237 4.237 22 C -0.050 4.050 23 C -0.204 4.204 24 H 0.049 0.951 25 H 0.068 0.932 26 H 0.049 0.951 27 H 0.398 0.602 28 H 0.113 0.887 29 H 0.115 0.885 30 H 0.118 0.882 31 H 0.115 0.885 32 H 0.119 0.881 33 H 0.271 0.729 34 H 0.130 0.870 35 H 0.113 0.887 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.150 -1.492 0.286 19.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.390 5.390 3 C 0.113 3.887 4 C -0.241 4.241 5 C -0.088 4.088 6 C -0.204 4.204 7 C 0.044 3.956 8 C -0.162 4.162 9 C -0.073 4.073 10 C -0.214 4.214 11 C 0.105 3.895 12 O -0.074 6.074 13 C -0.467 4.467 14 H 0.112 0.888 15 C -0.165 4.165 16 N -0.493 5.493 17 Si 0.767 3.233 18 H -0.190 1.190 19 H -0.201 1.201 20 H -0.201 1.201 21 C -0.256 4.256 22 C -0.068 4.068 23 C -0.226 4.226 24 H 0.067 0.933 25 H 0.087 0.913 26 H 0.067 0.933 27 H 0.232 0.768 28 H 0.131 0.869 29 H 0.133 0.867 30 H 0.136 0.864 31 H 0.132 0.868 32 H 0.137 0.863 33 H 0.081 0.919 34 H 0.147 0.853 35 H 0.131 0.869 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -18.921 -1.700 0.287 18.999 hybrid contribution 0.554 0.508 -0.080 0.756 sum -18.366 -1.192 0.207 18.406 Atomic orbital electron populations 1.21447 0.80700 1.01842 1.00820 1.44387 1.05342 1.05433 1.83807 1.17683 0.90936 0.86053 0.94058 1.20483 0.98922 0.91290 1.13385 1.20734 0.94036 0.96910 0.97151 1.20978 0.93748 0.97551 1.08099 1.18554 0.91976 0.92200 0.92900 1.18267 0.90592 0.93527 1.13836 1.20715 0.92856 0.96649 0.97101 1.20150 0.93345 0.96217 1.11716 1.19492 0.84771 0.93336 0.91868 1.83953 1.13117 1.33105 1.77210 1.21442 0.90341 0.83041 1.51899 0.88762 1.25335 0.95393 0.99474 0.96342 1.70046 1.06737 1.27254 1.45249 0.85618 0.79351 0.79962 0.78348 1.18977 1.20059 1.20053 1.21112 0.94043 0.98510 1.11917 1.20853 0.93441 0.96506 0.96017 1.20582 0.91540 0.98193 1.12314 0.93290 0.91275 0.93283 0.76803 0.86924 0.86654 0.86361 0.86750 0.86309 0.91909 0.85285 0.86926 0.86273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.72 9.94 59.85 0.59 1.31 16 2 N -0.76 -7.64 5.89 -65.43 -0.39 -8.03 16 3 C 0.21 2.80 6.65 -83.83 -0.56 2.24 16 4 C -0.22 -2.75 9.31 -39.31 -0.37 -3.11 16 5 C -0.07 -0.90 10.03 -39.66 -0.40 -1.29 16 6 C -0.18 -2.72 9.42 -39.21 -0.37 -3.08 16 7 C 0.04 0.72 5.87 -104.92 -0.62 0.11 16 8 C -0.16 -2.96 5.88 -104.85 -0.62 -3.58 16 9 C -0.06 -1.01 9.42 -39.28 -0.37 -1.38 16 10 C -0.20 -4.13 9.98 -39.45 -0.39 -4.53 16 11 C 0.16 3.86 6.65 -39.02 -0.26 3.60 16 12 O -0.17 -4.84 9.75 0.26 0.00 -4.84 16 13 C -0.39 -10.79 9.48 30.88 0.29 -10.50 16 14 H 0.10 2.40 5.19 -52.49 -0.27 2.13 16 15 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 16 N -0.86 -24.87 13.67 55.48 0.76 -24.11 16 17 Si 0.94 20.23 29.55 -169.99 -5.02 15.20 16 18 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 19 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 20 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 21 C -0.24 -5.15 9.15 -39.45 -0.36 -5.51 16 22 C -0.05 -0.95 9.42 -39.28 -0.37 -1.32 16 23 C -0.20 -2.98 9.27 -39.04 -0.36 -3.34 16 24 H 0.05 0.36 7.95 -51.93 -0.41 -0.05 16 25 H 0.07 0.36 8.14 -51.92 -0.42 -0.07 16 26 H 0.05 0.36 7.94 -51.93 -0.41 -0.05 16 27 H 0.40 3.42 8.84 -40.82 -0.36 3.06 16 28 H 0.11 1.18 6.72 -52.48 -0.35 0.83 16 29 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 30 H 0.12 1.62 6.19 -52.49 -0.32 1.30 16 31 H 0.11 1.77 6.20 -52.49 -0.33 1.44 16 32 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 33 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.13 2.78 5.62 -52.49 -0.30 2.48 16 35 H 0.11 1.82 6.19 -52.49 -0.33 1.49 16 36 H 0.12 1.60 6.20 -52.48 -0.33 1.28 16 LS Contribution 305.75 15.07 4.61 4.61 Total: -1.00 -30.91 305.75 -8.10 -39.00 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -3.81 Total: 7.58 kcal Atomic # 6 Polarization: -25.17 SS G_CDS: -4.25 Total: -29.42 kcal Atomic # 7 Polarization: -32.51 SS G_CDS: 0.37 Total: -32.14 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: 0.00 Total: -4.84 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.91 -8.10 -39.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243591669.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.425 kcal (2) G-P(sol) polarization free energy of solvation -30.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds